Wall clock time and date at job start Tue Mar 31 2020 00:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38385 * 119.92890 * 2 1 4 4 C 1.38336 * 120.29325 * 179.74791 * 3 2 1 5 5 C 1.37977 * 120.14508 * 0.22679 * 4 3 2 6 6 C 1.39560 * 119.85241 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.14270 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99953 * 130.62272 * 7 6 5 9 9 N 1.34781 * 119.99946 * 310.62363 * 7 6 5 10 10 C 1.46499 * 119.99746 * 4.42590 * 9 7 6 11 11 C 1.46496 * 119.99999 * 184.42334 * 9 7 6 12 12 C 1.50704 * 109.47154 * 89.99906 * 11 9 7 13 13 H 1.08000 * 119.99384 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99955 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00339 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99782 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47176 * 59.99549 * 16 14 12 18 18 H 1.48499 * 109.46971 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47077 * 299.99490 * 16 14 12 20 20 C 1.37938 * 119.92809 * 180.25369 * 2 1 3 21 21 N 1.48012 * 120.07486 * 359.97409 * 20 2 1 22 22 O 1.21805 * 119.99947 * 270.30402 * 21 20 2 23 23 O 1.21801 * 119.99892 * 90.29858 * 21 20 2 24 24 H 1.09003 * 109.47353 * 90.00448 * 1 2 3 25 25 H 1.09007 * 109.47455 * 210.00497 * 1 2 3 26 26 H 1.09003 * 109.47060 * 330.00263 * 1 2 3 27 27 H 1.08004 * 119.84623 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.92303 * 180.25325 * 4 3 2 29 29 H 1.08003 * 120.07122 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47290 * 93.03880 * 10 9 7 31 31 H 1.09009 * 109.46830 * 213.03459 * 10 9 7 32 32 H 1.08993 * 109.47414 * 333.03058 * 10 9 7 33 33 H 1.08997 * 109.47019 * 210.00269 * 11 9 7 34 34 H 1.09005 * 109.46931 * 330.00428 * 11 9 7 35 35 H 0.97002 * 120.00755 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0053 5 6 4.2812 0.0194 0.0058 6 6 3.5911 -1.1936 0.0005 7 6 4.3352 -2.4712 0.0005 8 8 4.0458 -3.3431 0.7965 9 7 5.3344 -2.6690 -0.8821 10 6 5.7477 -1.5843 -1.7759 11 6 6.0073 -3.9687 -0.9476 12 6 5.2956 -4.8534 -1.9385 13 1 4.4291 -4.4842 -2.4669 14 6 5.7508 -6.1340 -2.1704 15 7 6.8062 -6.5833 -1.5273 16 14 4.8690 -7.2304 -3.3992 17 1 4.8948 -6.5921 -4.7397 18 1 5.5510 -8.5479 -3.4655 19 1 3.4606 -7.4227 -2.9695 20 6 2.1951 -1.1954 -0.0053 21 7 1.4551 -2.4773 -0.0104 22 8 1.1462 -3.0063 1.0424 23 8 1.1550 -3.0030 -1.0673 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6537 2.1325 0.0004 28 1 4.1135 2.1475 0.0094 29 1 5.3612 0.0276 0.0103 30 1 6.5685 -1.0307 -1.3201 31 1 6.0758 -2.0028 -2.7275 32 1 4.9062 -0.9126 -1.9453 33 1 7.0408 -3.8272 -1.2635 34 1 5.9890 -4.4373 0.0365 35 1 7.1267 -7.4842 -1.6907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:17 Heat of formation + Delta-G solvation = -3.413292 kcal Electronic energy + Delta-G solvation = -21990.985835 eV Core-core repulsion = 18571.960476 eV Total energy + Delta-G solvation = -3419.025359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.97916 -40.08999 -38.48851 -36.08413 -35.15523 -33.60891 -32.60776 -31.97340 -28.49986 -27.42814 -26.53806 -25.80157 -24.05299 -22.29613 -21.93768 -19.40756 -18.71990 -18.38687 -17.41638 -16.84464 -16.57946 -15.87547 -15.48676 -15.22611 -14.60995 -14.32739 -14.24272 -14.06872 -13.19046 -12.97960 -12.71267 -12.48143 -12.36176 -12.14540 -12.11448 -11.73085 -11.26645 -11.24249 -10.93579 -10.77437 -10.68096 -10.59836 -10.19375 -9.74645 -9.66353 -9.41884 -9.17657 -8.44431 -7.87815 -6.06612 -4.12133 0.37911 0.60019 0.88286 1.59990 2.78214 3.17340 3.35769 3.39529 3.46554 3.58204 4.13217 4.27152 4.43782 4.48990 4.65535 4.70666 4.89475 5.03240 5.12925 5.21172 5.28845 5.44274 5.57665 5.62781 5.68851 5.70838 5.81201 6.05454 6.11994 6.63448 6.84607 7.26853 7.36397 7.88362 7.91609 8.09186 8.15990 8.61429 8.92476 9.53687 11.01644 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005976 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.689103 B = 4684.628466 C = 5390.421834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.045 4.045 3 C -0.101 4.101 4 C -0.087 4.087 5 C -0.089 4.089 6 C -0.062 4.062 7 C 0.529 3.471 8 O -0.514 6.514 9 N -0.583 5.583 10 C 0.074 3.926 11 C 0.244 3.756 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.013 3.987 21 N 0.020 4.980 22 O -0.117 6.117 23 O -0.143 6.143 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 20.350 1.115 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.047 4.047 3 C -0.120 4.120 4 C -0.104 4.104 5 C -0.108 4.108 6 C -0.067 4.067 7 C 0.313 3.687 8 O -0.391 6.391 9 N -0.314 5.314 10 C -0.070 4.070 11 C 0.126 3.874 12 C -0.571 4.571 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.533 5.533 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.069 4.069 21 N 0.552 4.448 22 O -0.345 6.345 23 O -0.363 6.363 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.327 20.351 1.506 21.365 hybrid contribution -0.478 -0.935 -0.749 1.289 sum -6.805 19.416 0.758 20.588 Atomic orbital electron populations 1.21011 0.89240 1.04438 1.03996 1.19553 0.97289 0.90263 0.97546 1.21138 0.94358 0.96680 0.99837 1.21401 0.94088 0.98583 0.96374 1.21466 1.01273 0.89930 0.98155 1.20124 0.90714 0.97043 0.98798 1.18087 0.81865 0.85648 0.83144 1.90900 1.66165 1.43408 1.38593 1.48135 1.33687 1.15544 1.33994 1.21917 0.99213 0.90314 0.95542 1.19446 0.92005 0.76806 0.99126 1.21357 1.13772 0.98399 1.23611 0.92283 1.24911 0.94979 0.97557 0.96357 1.69916 1.23730 1.17874 1.41762 0.86519 0.80222 0.79408 0.81176 1.20155 1.21102 1.19754 1.20746 0.91206 0.84116 1.10795 1.43319 0.99230 1.01619 1.00626 1.94556 1.55130 1.63898 1.20907 1.94583 1.56774 1.64618 1.20288 0.89400 0.91081 0.89433 0.83612 0.83673 0.83135 0.93001 0.90127 0.92127 0.94356 0.93424 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.76 36.00 0.35 -0.92 16 2 C -0.05 -0.54 5.87 -104.68 -0.61 -1.16 16 3 C -0.10 -0.85 9.69 -39.49 -0.38 -1.24 16 4 C -0.09 -0.71 10.03 -39.64 -0.40 -1.10 16 5 C -0.09 -1.04 7.62 -39.18 -0.30 -1.34 16 6 C -0.06 -1.06 4.88 -104.97 -0.51 -1.58 16 7 C 0.53 11.82 6.92 -12.33 -0.09 11.74 16 8 O -0.51 -13.94 15.65 4.96 0.08 -13.86 16 9 N -0.58 -12.69 2.86 -184.08 -0.53 -13.22 16 10 C 0.07 1.15 9.10 59.85 0.54 1.70 16 11 C 0.24 6.50 5.21 -5.19 -0.03 6.47 16 12 C -0.53 -15.56 9.39 -34.44 -0.32 -15.88 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.06 1.89 5.46 -17.82 -0.10 1.79 16 15 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 16 Si 0.90 22.58 29.54 -169.99 -5.02 17.56 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.01 0.21 6.10 -79.55 -0.49 -0.27 16 21 N 0.02 0.42 2.31 34.15 0.08 0.50 16 22 O -0.12 -2.54 18.71 -30.93 -0.58 -3.12 16 23 O -0.14 -3.11 19.26 -29.46 -0.57 -3.68 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.83 7.31 -51.93 -0.38 0.45 16 26 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 28 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 29 H 0.15 1.47 6.60 -52.48 -0.35 1.13 16 30 H 0.05 0.64 7.57 -51.93 -0.39 0.25 16 31 H 0.08 1.30 8.10 -51.92 -0.42 0.88 16 32 H 0.06 0.81 5.69 -51.93 -0.30 0.52 16 33 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.05 1.43 7.36 -51.93 -0.38 1.05 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -36.85 312.14 -7.29 -44.14 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -3.87 Total: -5.06 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.33 Total: -1.79 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.29 Total: -38.89 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.07 Total: -20.67 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.85 -7.29 -44.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.730 kcal (2) G-P(sol) polarization free energy of solvation -36.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds