Wall clock time and date at job start Tue Mar 31 2020 00:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38385 * 119.92890 * 2 1 4 4 C 1.38336 * 120.29325 * 179.74791 * 3 2 1 5 5 C 1.37977 * 120.14508 * 0.22679 * 4 3 2 6 6 C 1.39560 * 119.85241 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.14270 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99953 * 130.62272 * 7 6 5 9 9 N 1.34781 * 119.99946 * 310.62363 * 7 6 5 10 10 C 1.46499 * 119.99746 * 4.42590 * 9 7 6 11 11 C 1.46496 * 119.99999 * 184.42334 * 9 7 6 12 12 C 1.50704 * 109.47154 * 89.99906 * 11 9 7 13 13 H 1.08000 * 119.99384 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99955 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00339 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99782 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47176 * 59.99549 * 16 14 12 18 18 H 1.48499 * 109.46971 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47077 * 299.99490 * 16 14 12 20 20 C 1.37938 * 119.92809 * 180.25369 * 2 1 3 21 21 N 1.48012 * 120.07486 * 359.97409 * 20 2 1 22 22 O 1.21805 * 119.99947 * 270.30402 * 21 20 2 23 23 O 1.21801 * 119.99892 * 90.29858 * 21 20 2 24 24 H 1.09003 * 109.47353 * 90.00448 * 1 2 3 25 25 H 1.09007 * 109.47455 * 210.00497 * 1 2 3 26 26 H 1.09003 * 109.47060 * 330.00263 * 1 2 3 27 27 H 1.08004 * 119.84623 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.92303 * 180.25325 * 4 3 2 29 29 H 1.08003 * 120.07122 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47290 * 93.03880 * 10 9 7 31 31 H 1.09009 * 109.46830 * 213.03459 * 10 9 7 32 32 H 1.08993 * 109.47414 * 333.03058 * 10 9 7 33 33 H 1.08997 * 109.47019 * 210.00269 * 11 9 7 34 34 H 1.09005 * 109.46931 * 330.00428 * 11 9 7 35 35 H 0.97002 * 120.00755 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0053 5 6 4.2812 0.0194 0.0058 6 6 3.5911 -1.1936 0.0005 7 6 4.3352 -2.4712 0.0005 8 8 4.0458 -3.3431 0.7965 9 7 5.3344 -2.6690 -0.8821 10 6 5.7477 -1.5843 -1.7759 11 6 6.0073 -3.9687 -0.9476 12 6 5.2956 -4.8534 -1.9385 13 1 4.4291 -4.4842 -2.4669 14 6 5.7508 -6.1340 -2.1704 15 7 6.8062 -6.5833 -1.5273 16 14 4.8690 -7.2304 -3.3992 17 1 4.8948 -6.5921 -4.7397 18 1 5.5510 -8.5479 -3.4655 19 1 3.4606 -7.4227 -2.9695 20 6 2.1951 -1.1954 -0.0053 21 7 1.4551 -2.4773 -0.0104 22 8 1.1462 -3.0063 1.0424 23 8 1.1550 -3.0030 -1.0673 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6537 2.1325 0.0004 28 1 4.1135 2.1475 0.0094 29 1 5.3612 0.0276 0.0103 30 1 6.5685 -1.0307 -1.3201 31 1 6.0758 -2.0028 -2.7275 32 1 4.9062 -0.9126 -1.9453 33 1 7.0408 -3.8272 -1.2635 34 1 5.9890 -4.4373 0.0365 35 1 7.1267 -7.4842 -1.6907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:17 Heat of formation + Delta-G solvation = -28.818676 kcal Electronic energy + Delta-G solvation = -21992.087495 eV Core-core repulsion = 18571.960476 eV Total energy + Delta-G solvation = -3420.127019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.41898 -41.45477 -39.83678 -37.67825 -36.94906 -35.05847 -34.24026 -33.11529 -30.18884 -28.73299 -27.88252 -27.15606 -25.76668 -23.88022 -23.01039 -20.88203 -20.01709 -19.95088 -18.84253 -18.71764 -18.27688 -17.48209 -16.69835 -16.54197 -16.20167 -15.87713 -15.25628 -15.10901 -14.65695 -14.37685 -13.97688 -13.70660 -13.64650 -13.50997 -13.25042 -13.15053 -12.95152 -12.88408 -12.75843 -12.62300 -12.36226 -12.30810 -12.21705 -11.84162 -11.13643 -10.72552 -10.59190 -10.15006 -9.69544 -8.32243 -6.47300 -0.75924 -0.65160 -0.27201 0.30678 1.29942 1.35901 1.37597 1.45873 1.95389 2.24317 2.33300 2.97858 3.13378 3.21329 3.57264 3.73826 3.88611 4.03212 4.15704 4.19938 4.41923 4.51203 4.55394 4.76567 4.78576 4.83518 4.86778 4.97603 5.01181 5.07354 5.07598 5.36422 5.49614 5.65453 5.92320 6.23957 6.36548 6.59093 6.96077 7.24100 8.75224 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005976 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.689103 B = 4684.628466 C = 5390.421834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 C -0.072 4.072 4 C -0.057 4.057 5 C -0.081 4.081 6 C -0.099 4.099 7 C 0.519 3.481 8 O -0.585 6.585 9 N -0.590 5.590 10 C 0.068 3.932 11 C 0.259 3.741 12 C -0.553 4.553 13 H 0.045 0.955 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.963 3.037 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.284 1.284 20 C -0.024 4.024 21 N 0.024 4.976 22 O -0.151 6.151 23 O -0.179 6.179 24 H 0.096 0.904 25 H 0.039 0.961 26 H 0.130 0.870 27 H 0.203 0.797 28 H 0.206 0.794 29 H 0.171 0.829 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.040 0.960 34 H -0.001 1.001 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 25.312 -0.131 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.090 4.090 4 C -0.074 4.074 5 C -0.099 4.099 6 C -0.103 4.103 7 C 0.306 3.694 8 O -0.467 6.467 9 N -0.319 5.319 10 C -0.073 4.073 11 C 0.138 3.862 12 C -0.591 4.591 13 H 0.063 0.937 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.787 3.213 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.210 1.210 20 C -0.105 4.105 21 N 0.550 4.450 22 O -0.377 6.377 23 O -0.396 6.396 24 H 0.115 0.885 25 H 0.058 0.942 26 H 0.149 0.851 27 H 0.220 0.780 28 H 0.223 0.777 29 H 0.189 0.811 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.406 25.354 0.220 26.151 hybrid contribution -0.427 -2.281 -0.316 2.342 sum -6.833 23.072 -0.096 24.063 Atomic orbital electron populations 1.21129 0.87935 1.04991 1.04718 1.20077 0.98470 0.89536 0.96813 1.21882 0.94816 0.96751 0.95570 1.22086 0.94069 0.99056 0.92159 1.21834 1.02375 0.88932 0.96803 1.19780 0.90331 0.96009 1.04204 1.18982 0.81411 0.87217 0.81781 1.90836 1.67936 1.46593 1.41300 1.48123 1.33556 1.15251 1.34954 1.22276 1.01651 0.89066 0.94341 1.18890 0.92361 0.79132 0.95767 1.21579 1.13635 0.99625 1.24257 0.93680 1.25791 0.95689 0.98856 0.98192 1.70011 1.24807 1.18475 1.42826 0.85532 0.78146 0.78125 0.79480 1.18054 1.19417 1.20984 1.21117 0.91203 0.82912 1.15245 1.43974 0.98489 1.02846 0.99652 1.94510 1.56365 1.65580 1.21206 1.94528 1.58081 1.66348 1.20622 0.88547 0.94228 0.85137 0.77972 0.77731 0.81131 0.88831 0.90936 0.89363 0.94206 0.98265 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.76 71.23 0.70 -1.53 16 2 C -0.05 -1.00 5.87 -19.90 -0.12 -1.12 16 3 C -0.07 -0.70 9.69 22.33 0.22 -0.49 16 4 C -0.06 -0.50 10.03 22.23 0.22 -0.27 16 5 C -0.08 -1.54 7.62 22.53 0.17 -1.37 16 6 C -0.10 -3.34 4.88 -20.09 -0.10 -3.44 16 7 C 0.52 24.47 6.92 86.79 0.60 25.07 16 8 O -0.59 -34.62 15.65 -3.55 -0.06 -34.68 16 9 N -0.59 -26.64 2.86 -854.57 -2.44 -29.08 16 10 C 0.07 2.02 9.10 127.77 1.16 3.19 16 11 C 0.26 14.64 5.21 85.63 0.45 15.08 16 12 C -0.55 -33.90 9.39 25.60 0.24 -33.66 16 13 H 0.04 2.82 7.81 -2.91 -0.02 2.80 16 14 C 0.01 0.89 5.46 84.65 0.46 1.35 16 15 N -0.92 -57.32 13.29 21.44 0.28 -57.03 16 16 Si 0.96 47.49 29.54 68.60 2.03 49.52 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 20 C -0.02 -0.82 6.10 36.63 0.22 -0.60 16 21 N 0.02 1.06 2.31 -45.86 -0.11 0.96 16 22 O -0.15 -7.18 18.71 20.28 0.38 -6.80 16 23 O -0.18 -8.45 19.26 18.88 0.36 -8.09 16 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 0.93 7.31 -2.38 -0.02 0.91 16 26 H 0.13 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 28 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 29 H 0.17 2.51 6.60 -2.91 -0.02 2.49 16 30 H 0.09 2.00 7.57 -2.39 -0.02 1.99 16 31 H 0.07 2.28 8.10 -2.38 -0.02 2.26 16 32 H 0.09 2.14 5.69 -2.39 -0.01 2.13 16 33 H 0.04 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.00 -0.05 7.36 -2.38 -0.02 -0.07 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -93.89 312.14 5.80 -88.10 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 1.12 Total: -5.11 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.23 Total: 2.21 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.26 Total: -85.15 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: 0.69 Total: -49.57 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -93.89 5.80 -88.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.281 kcal (2) G-P(sol) polarization free energy of solvation -93.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds