Wall clock time and date at job start Tue Mar 31 2020 00:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37973 * 120.07184 * 2 1 4 4 C 1.38340 * 120.14155 * 180.02562 * 3 2 1 5 5 C 1.38381 * 120.29394 * 359.79145 * 4 3 2 6 6 C 1.37937 * 120.14347 * 0.46441 * 5 4 3 7 7 N 1.48020 * 120.07250 * 179.79553 * 6 5 4 8 8 O 1.21803 * 119.99894 * 359.71983 * 7 6 5 9 9 O 1.21799 * 119.99903 * 179.44882 * 7 6 5 10 10 C 1.39560 * 120.06935 * 180.02562 * 2 1 3 11 11 C 1.47839 * 120.15029 * 359.94764 * 10 2 1 12 12 O 1.21554 * 120.00404 * 270.03200 * 11 10 2 13 13 N 1.34776 * 119.99977 * 90.02601 * 11 10 2 14 14 C 1.46498 * 119.99856 * 0.02562 * 13 11 10 15 15 C 1.46503 * 120.00298 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.47167 * 89.99605 * 15 13 11 17 17 H 1.07997 * 120.00024 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99569 * 180.02562 * 16 15 13 19 19 N 1.31509 * 120.00409 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99641 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47454 * 89.99806 * 20 18 16 22 22 H 1.48502 * 109.47043 * 210.00358 * 20 18 16 23 23 H 1.48510 * 109.47117 * 329.99608 * 20 18 16 24 24 H 1.09000 * 109.46973 * 269.97410 * 1 2 3 25 25 H 1.08995 * 109.47227 * 29.97584 * 1 2 3 26 26 H 1.09003 * 109.46978 * 149.98337 * 1 2 3 27 27 H 1.07996 * 119.92994 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.85264 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.92683 * 180.23463 * 5 4 3 30 30 H 1.08993 * 109.47340 * 89.99982 * 14 13 11 31 31 H 1.09005 * 109.47490 * 210.00239 * 14 13 11 32 32 H 1.09007 * 109.47116 * 329.99984 * 14 13 11 33 33 H 1.09001 * 109.46784 * 209.99767 * 15 13 11 34 34 H 1.09001 * 109.46681 * 330.00055 * 15 13 11 35 35 H 0.96996 * 120.00317 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2813 0.0017 0.0033 6 6 3.6023 -1.1989 -0.0020 7 7 4.3521 -2.4752 -0.0025 8 8 5.5701 -2.4659 -0.0034 9 8 3.7511 -3.5345 0.0029 10 6 2.2063 -1.2078 -0.0005 11 6 1.4720 -2.4909 0.0001 12 8 1.1705 -3.0182 1.0529 13 7 1.1369 -3.0761 -1.1669 14 6 1.5007 -2.4409 -2.4359 15 6 0.4087 -4.3473 -1.1664 16 6 -1.0738 -4.0771 -1.1661 17 1 -1.4373 -3.0601 -1.1667 18 6 -1.9661 -5.1282 -1.1651 19 7 -1.5235 -6.3666 -1.1648 20 14 -3.8038 -4.7933 -1.1654 21 1 -4.2908 -4.7058 -2.5656 22 1 -4.5082 -5.8966 -0.4642 23 1 -4.0734 -3.5109 -0.4666 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8899 -0.5141 27 1 1.6585 2.1293 0.0004 28 1 4.1183 2.1331 -0.0001 29 1 5.3612 0.0099 0.0067 30 1 2.4826 -2.7940 -2.7506 31 1 0.7619 -2.6968 -3.1954 32 1 1.5282 -1.3589 -2.3059 33 1 0.6739 -4.9182 -2.0563 34 1 0.6742 -4.9177 -0.2762 35 1 -2.1512 -7.1060 -1.1637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020363127.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:40 Heat of formation + Delta-G solvation = -7.026551 kcal Electronic energy + Delta-G solvation = -22199.831019 eV Core-core repulsion = 18780.648977 eV Total energy + Delta-G solvation = -3419.182041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08976 -40.13853 -38.27906 -36.31011 -34.88400 -33.40709 -32.71144 -31.90103 -28.16118 -27.38804 -26.61794 -25.84045 -23.93266 -22.27680 -21.82975 -19.43779 -18.56288 -18.33753 -17.37547 -16.94846 -16.60756 -15.94172 -15.71443 -15.28917 -14.46607 -14.13933 -14.06580 -13.75459 -13.11266 -12.63668 -12.47648 -12.44601 -12.18604 -12.17366 -11.93595 -11.76247 -11.33810 -11.22582 -10.96606 -10.89108 -10.86302 -10.59419 -10.19695 -9.72913 -9.65482 -9.34140 -9.07705 -8.43875 -7.71251 -6.04370 -4.10072 -0.18119 0.65892 1.37441 1.49189 3.03053 3.13752 3.28458 3.35583 3.38110 3.66305 4.18750 4.36593 4.41259 4.57352 4.67100 4.75402 4.93002 5.26806 5.30547 5.35008 5.49689 5.51812 5.58404 5.72330 5.83163 5.93392 5.99027 6.09872 6.25171 6.50775 7.01078 7.46653 7.49037 7.80132 7.90465 8.20954 8.28105 8.79314 8.96652 9.54299 11.03704 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.006012 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.585941 B = 4656.237761 C = 5475.372707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.074 4.074 4 C -0.111 4.111 5 C -0.066 4.066 6 C -0.020 4.020 7 N 0.022 4.978 8 O -0.170 6.170 9 O -0.124 6.124 10 C -0.045 4.045 11 C 0.555 3.445 12 O -0.516 6.516 13 N -0.581 5.581 14 C 0.081 3.919 15 C 0.248 3.752 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 17.855 -1.336 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.054 4.054 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.085 4.085 6 C -0.103 4.103 7 N 0.543 4.457 8 O -0.382 6.382 9 O -0.345 6.345 10 C -0.050 4.050 11 C 0.339 3.661 12 O -0.392 6.392 13 N -0.312 5.312 14 C -0.064 4.064 15 C 0.130 3.870 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.022 17.957 -0.805 19.684 hybrid contribution -0.675 -0.145 -0.080 0.695 sum 7.347 17.812 -0.885 19.288 Atomic orbital electron populations 1.20998 0.88610 1.04565 1.04125 1.20079 0.97615 0.90284 0.97404 1.21454 0.94296 0.98112 0.95342 1.21242 0.94118 0.97531 1.00044 1.20964 1.01953 0.89647 0.95961 1.21145 0.90993 0.84606 1.13599 1.43588 1.01132 1.02910 0.98080 1.94477 0.95551 1.94118 1.54013 1.94719 1.70032 1.18086 1.51658 1.20274 0.91058 0.97346 0.96332 1.17598 0.79969 0.83064 0.85506 1.90816 1.54508 1.63158 1.30715 1.48003 1.54849 1.24867 1.03488 1.21668 1.00414 0.96452 0.87828 1.19377 0.90198 0.78319 0.99116 1.21392 0.90879 0.92929 1.51642 0.92500 1.24924 0.99080 0.94912 0.95064 1.69933 1.34818 0.98210 1.49941 0.86516 0.85020 0.78013 0.77956 1.20656 1.21046 1.19948 0.89662 0.90356 0.89461 0.83654 0.83448 0.82790 0.93959 0.89892 0.93035 0.94580 0.93191 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.62 36.01 0.35 -1.27 16 2 C -0.05 -0.68 5.48 -104.22 -0.57 -1.25 16 3 C -0.07 -0.65 9.69 -39.64 -0.38 -1.04 16 4 C -0.11 -0.89 10.04 -39.49 -0.40 -1.29 16 5 C -0.07 -0.73 9.55 -39.64 -0.38 -1.11 16 6 C -0.02 -0.31 6.88 -79.55 -0.55 -0.86 16 7 N 0.02 0.41 4.45 34.16 0.15 0.56 16 8 O -0.17 -2.95 18.45 -29.46 -0.54 -3.49 16 9 O -0.12 -2.71 16.26 -33.28 -0.54 -3.25 16 10 C -0.05 -0.77 3.92 -104.97 -0.41 -1.18 16 11 C 0.55 12.15 2.98 -12.33 -0.04 12.11 16 12 O -0.52 -13.61 16.56 -3.52 -0.06 -13.66 16 13 N -0.58 -12.75 2.74 -184.08 -0.50 -13.25 16 14 C 0.08 1.37 10.26 59.85 0.61 1.99 16 15 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 16 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 17 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 20 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.09 1.42 7.08 -51.93 -0.37 1.05 16 27 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 28 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 29 H 0.15 1.38 7.61 -52.49 -0.40 0.99 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.05 0.74 6.55 -51.92 -0.34 0.40 16 33 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.05 1.51 7.42 -51.93 -0.39 1.12 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -34.65 312.44 -7.27 -41.92 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -3.99 Total: -3.56 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.21 Total: -0.71 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.38 Total: -38.38 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.14 Total: -20.41 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.65 -7.27 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020363127.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.891 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds