Wall clock time and date at job start Tue Mar 31 2020 00:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31429 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99974 * 3 2 1 5 5 H 1.48505 * 109.47253 * 30.00169 * 3 2 1 6 6 H 1.48497 * 109.47375 * 149.99793 * 3 2 1 7 7 C 1.38796 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99158 * 179.97438 * 7 2 1 9 9 O 1.34861 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.34775 * 116.99794 * 179.97438 * 9 7 2 11 11 O 1.21541 * 120.00567 * 359.97438 * 10 9 7 12 12 C 1.47358 * 119.99595 * 179.97438 * 10 9 7 13 13 C 1.40445 * 120.47946 * 180.02562 * 12 10 9 14 14 C 1.36822 * 118.48061 * 179.97438 * 13 12 10 15 15 C 1.39424 * 119.39514 * 359.97438 * 14 13 12 16 16 N 1.38432 * 119.53588 * 179.97438 * 15 14 13 17 17 C 1.47012 * 111.00369 * 303.64347 * 16 15 14 18 18 C 1.53097 * 109.26245 * 177.60497 * 17 16 15 19 19 O 1.43008 * 109.25758 * 56.84395 * 18 17 16 20 20 C 1.43016 * 113.74035 * 301.33206 * 19 18 17 21 21 C 1.47009 * 111.00210 * 180.02562 * 16 15 14 22 22 N 1.32615 * 120.93456 * 0.02562 * 15 14 13 23 23 C 1.31653 * 121.64890 * 359.97438 * 22 15 14 24 24 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.75694 * 359.70603 * 13 12 10 26 26 H 1.07999 * 120.30510 * 180.02562 * 14 13 12 27 27 H 1.09005 * 109.50336 * 297.54022 * 17 16 15 28 28 H 1.09006 * 109.50950 * 57.66358 * 17 16 15 29 29 H 1.09004 * 109.50375 * 296.91369 * 18 17 16 30 30 H 1.08992 * 109.54186 * 176.80296 * 18 17 16 31 31 H 1.09003 * 109.50817 * 298.73522 * 20 19 18 32 32 H 1.09005 * 109.54301 * 178.63035 * 20 19 18 33 33 H 1.08995 * 109.50984 * 302.32770 * 21 16 15 34 34 H 1.08997 * 109.50833 * 62.41731 * 21 16 15 35 35 H 1.08008 * 119.74777 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2020 0.0001 9 8 1.3339 -2.3700 0.0005 10 6 2.0679 -3.5003 0.0005 11 8 3.2817 -3.4368 0.0001 12 6 1.3989 -4.8132 0.0011 13 6 2.1538 -5.9975 0.0017 14 6 1.4905 -7.1941 0.0027 15 6 0.0962 -7.2037 0.0038 16 7 -0.5779 -8.4128 0.0043 17 6 -0.1712 -9.2433 -1.1386 18 6 -0.8942 -10.5909 -1.0662 19 8 -2.3064 -10.3674 -1.0346 20 6 -2.7375 -9.5627 0.0663 21 6 -2.0332 -8.2046 0.0048 22 7 -0.5933 -6.0709 0.0032 23 6 0.0049 -4.8981 0.0022 24 1 -0.4850 0.8400 -0.0004 25 1 3.2333 -5.9643 -0.0031 26 1 2.0417 -8.1228 0.0036 27 1 -0.4351 -8.7381 -2.0677 28 1 0.9061 -9.4060 -1.1053 29 1 -0.5891 -11.1195 -0.1631 30 1 -0.6398 -11.1886 -1.9414 31 1 -2.4859 -10.0614 1.0023 32 1 -3.8162 -9.4161 0.0105 33 1 -2.3154 -7.6090 0.8728 34 1 -2.3265 -7.6824 -0.9059 35 1 -0.5870 -3.9946 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021590193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:41 Heat of formation + Delta-G solvation = -67.982194 kcal Electronic energy + Delta-G solvation = -20939.887710 eV Core-core repulsion = 17518.062434 eV Total energy + Delta-G solvation = -3421.825276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85446 -39.38791 -38.51217 -35.90303 -35.15749 -32.51985 -32.26838 -31.33416 -30.62668 -27.46285 -25.44867 -24.77884 -23.26251 -22.73332 -20.98579 -20.19748 -17.95425 -17.86552 -17.14517 -16.57542 -16.05883 -15.56208 -15.32908 -15.16107 -15.00462 -14.61709 -14.48654 -14.26403 -14.07099 -13.28185 -13.03789 -12.73558 -12.47169 -12.27258 -11.77007 -11.66843 -11.60981 -11.31318 -10.95156 -10.59548 -10.48166 -10.23517 -10.00120 -9.74765 -9.65840 -9.47708 -9.03443 -8.67344 -8.10133 -6.52691 -4.15014 0.93541 1.48842 3.05865 3.14457 3.19151 3.21718 3.51139 3.60295 3.85572 4.23594 4.36948 4.48386 4.65186 4.73359 4.85303 4.95077 5.04598 5.08158 5.12465 5.20599 5.25569 5.29891 5.36353 5.50466 5.69326 5.81432 5.86032 5.98655 6.18278 6.52961 6.54631 6.82916 6.83771 7.09914 7.30375 7.84520 8.07319 8.61706 8.95722 9.73742 10.64646 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040098 B = 0.003490 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.117475 B = 8021.243553 C = 8584.955820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.374 4.374 8 H 0.099 0.901 9 O -0.204 6.204 10 C 0.437 3.563 11 O -0.555 6.555 12 C -0.162 4.162 13 C -0.009 4.009 14 C -0.195 4.195 15 C 0.312 3.688 16 N -0.476 5.476 17 C 0.020 3.980 18 C 0.065 3.935 19 O -0.385 6.385 20 C 0.060 3.940 21 C 0.029 3.971 22 N -0.524 5.524 23 C 0.172 3.828 24 H 0.272 0.728 25 H 0.146 0.854 26 H 0.137 0.863 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -17.965 -0.954 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.450 4.450 8 H 0.116 0.884 9 O -0.111 6.111 10 C 0.285 3.715 11 O -0.454 6.454 12 C -0.166 4.166 13 C -0.034 4.034 14 C -0.217 4.217 15 C 0.080 3.920 16 N -0.194 5.194 17 C -0.106 4.106 18 C -0.013 4.013 19 O -0.304 6.304 20 C -0.017 4.017 21 C -0.098 4.098 22 N -0.238 5.238 23 C 0.014 3.986 24 H 0.082 0.918 25 H 0.164 0.836 26 H 0.155 0.845 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.256 -18.191 -0.667 18.695 hybrid contribution 1.369 1.414 -0.314 1.993 sum -2.887 -16.777 -0.981 17.052 Atomic orbital electron populations 1.69974 1.06074 1.28087 1.45089 1.25401 0.95881 0.99009 0.96065 0.85624 0.79087 0.79397 0.78849 1.19754 1.20198 1.18961 1.21328 0.92604 0.79639 1.51398 0.88367 1.83883 1.39205 1.13286 1.74691 1.20386 0.85814 0.85106 0.80204 1.90634 1.14988 1.87785 1.51964 1.20322 0.94913 0.92854 1.08542 1.21253 1.01181 0.90186 0.90825 1.21108 0.93093 0.99047 1.08467 1.19874 0.90309 0.88532 0.93280 1.59186 1.07585 1.12374 1.40292 1.22985 1.01791 0.94623 0.91188 1.22684 0.80916 0.94777 1.02873 1.87996 1.22393 1.71254 1.48745 1.22806 0.99370 0.89761 0.89728 1.22687 0.85143 0.97670 1.04328 1.67695 1.40368 0.97976 1.17715 1.23153 0.91607 0.94905 0.88905 0.91781 0.83639 0.84529 0.92528 0.88621 0.91971 0.87900 0.92228 0.87913 0.88326 0.91959 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.37 13.67 55.49 0.76 -23.61 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 3 Si 0.95 20.82 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.37 -10.87 9.65 30.94 0.30 -10.57 16 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.20 -5.75 9.01 -21.78 -0.20 -5.95 16 10 C 0.44 11.02 7.83 34.44 0.27 11.29 16 11 O -0.55 -15.01 15.66 -19.30 -0.30 -15.32 16 12 C -0.16 -3.28 5.89 -104.83 -0.62 -3.90 16 13 C -0.01 -0.14 9.65 -39.26 -0.38 -0.52 16 14 C -0.19 -2.74 9.14 -39.65 -0.36 -3.10 16 15 C 0.31 4.68 6.39 -155.28 -0.99 3.69 16 16 N -0.48 -5.89 4.74 -172.92 -0.82 -6.71 16 17 C 0.02 0.20 5.39 -3.71 -0.02 0.18 16 18 C 0.06 0.54 7.01 37.21 0.26 0.80 16 19 O -0.39 -4.07 10.83 -35.23 -0.38 -4.45 16 20 C 0.06 0.57 7.01 37.21 0.26 0.83 16 21 C 0.03 0.34 4.81 -3.71 -0.02 0.32 16 22 N -0.52 -8.97 8.66 -12.12 -0.10 -9.07 16 23 C 0.17 3.27 10.79 -17.10 -0.18 3.09 16 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.15 2.31 7.73 -52.49 -0.41 1.90 16 26 H 0.14 1.47 7.17 -52.49 -0.38 1.10 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.78 6.80 -51.93 -0.35 0.42 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.21 7.85 -51.93 -0.41 0.80 16 34 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 35 H 0.18 3.46 7.61 -52.48 -0.40 3.06 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -32.92 303.53 -7.04 -39.96 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.97 Total: 1.64 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.58 Total: 3.14 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.17 Total: -39.39 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.88 Total: -25.72 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.92 -7.04 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021590193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.026 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds