Wall clock time and date at job start Tue Mar 31 2020 00:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31429 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99974 * 3 2 1 5 5 H 1.48505 * 109.47253 * 30.00169 * 3 2 1 6 6 H 1.48497 * 109.47375 * 149.99793 * 3 2 1 7 7 C 1.38796 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99158 * 179.97438 * 7 2 1 9 9 O 1.34861 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.34775 * 116.99794 * 179.97438 * 9 7 2 11 11 O 1.21541 * 120.00567 * 359.97438 * 10 9 7 12 12 C 1.47358 * 119.99595 * 179.97438 * 10 9 7 13 13 C 1.40445 * 120.47946 * 180.02562 * 12 10 9 14 14 C 1.36822 * 118.48061 * 179.97438 * 13 12 10 15 15 C 1.39424 * 119.39514 * 359.97438 * 14 13 12 16 16 N 1.38432 * 119.53588 * 179.97438 * 15 14 13 17 17 C 1.47012 * 111.00369 * 303.64347 * 16 15 14 18 18 C 1.53097 * 109.26245 * 177.60497 * 17 16 15 19 19 O 1.43008 * 109.25758 * 56.84395 * 18 17 16 20 20 C 1.43016 * 113.74035 * 301.33206 * 19 18 17 21 21 C 1.47009 * 111.00210 * 180.02562 * 16 15 14 22 22 N 1.32615 * 120.93456 * 0.02562 * 15 14 13 23 23 C 1.31653 * 121.64890 * 359.97438 * 22 15 14 24 24 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.75694 * 359.70603 * 13 12 10 26 26 H 1.07999 * 120.30510 * 180.02562 * 14 13 12 27 27 H 1.09005 * 109.50336 * 297.54022 * 17 16 15 28 28 H 1.09006 * 109.50950 * 57.66358 * 17 16 15 29 29 H 1.09004 * 109.50375 * 296.91369 * 18 17 16 30 30 H 1.08992 * 109.54186 * 176.80296 * 18 17 16 31 31 H 1.09003 * 109.50817 * 298.73522 * 20 19 18 32 32 H 1.09005 * 109.54301 * 178.63035 * 20 19 18 33 33 H 1.08995 * 109.50984 * 302.32770 * 21 16 15 34 34 H 1.08997 * 109.50833 * 62.41731 * 21 16 15 35 35 H 1.08008 * 119.74777 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2020 0.0001 9 8 1.3339 -2.3700 0.0005 10 6 2.0679 -3.5003 0.0005 11 8 3.2817 -3.4368 0.0001 12 6 1.3989 -4.8132 0.0011 13 6 2.1538 -5.9975 0.0017 14 6 1.4905 -7.1941 0.0027 15 6 0.0962 -7.2037 0.0038 16 7 -0.5779 -8.4128 0.0043 17 6 -0.1712 -9.2433 -1.1386 18 6 -0.8942 -10.5909 -1.0662 19 8 -2.3064 -10.3674 -1.0346 20 6 -2.7375 -9.5627 0.0663 21 6 -2.0332 -8.2046 0.0048 22 7 -0.5933 -6.0709 0.0032 23 6 0.0049 -4.8981 0.0022 24 1 -0.4850 0.8400 -0.0004 25 1 3.2333 -5.9643 -0.0031 26 1 2.0417 -8.1228 0.0036 27 1 -0.4351 -8.7381 -2.0677 28 1 0.9061 -9.4060 -1.1053 29 1 -0.5891 -11.1195 -0.1631 30 1 -0.6398 -11.1886 -1.9414 31 1 -2.4859 -10.0614 1.0023 32 1 -3.8162 -9.4161 0.0105 33 1 -2.3154 -7.6090 0.8728 34 1 -2.3265 -7.6824 -0.9059 35 1 -0.5870 -3.9946 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021590193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:41 Heat of formation + Delta-G solvation = -90.803358 kcal Electronic energy + Delta-G solvation = -20940.877310 eV Core-core repulsion = 17518.062434 eV Total energy + Delta-G solvation = -3422.814876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09295 -40.98910 -39.88036 -37.40645 -36.75569 -34.36723 -33.82153 -32.22982 -31.91815 -28.64202 -27.35723 -25.77902 -24.70580 -23.90233 -22.34448 -21.45483 -19.96012 -19.27773 -18.71370 -17.76363 -17.10790 -16.88432 -16.70872 -16.50328 -16.21371 -16.08992 -15.93772 -15.49569 -15.37193 -14.66542 -14.47561 -14.22895 -13.84079 -13.52791 -13.32391 -13.21405 -12.59435 -12.45265 -12.38891 -12.20364 -12.08492 -11.71402 -11.42228 -11.25403 -11.06755 -10.73765 -10.65175 -10.55882 -9.35565 -8.59232 -6.36320 -0.50588 0.14841 1.33778 1.34842 1.51513 1.68211 2.06734 2.22985 2.64453 2.69241 2.90535 2.99849 3.23804 3.76475 3.79051 3.83533 3.90682 3.99060 4.10950 4.20401 4.27669 4.41969 4.54385 4.57044 4.71626 4.78237 4.82157 4.90081 4.95470 5.07322 5.21486 5.24076 5.47533 5.76779 5.87926 6.12762 6.53680 6.72712 6.85135 7.66966 8.61068 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040098 B = 0.003490 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.117475 B = 8021.243553 C = 8584.955820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.420 4.420 8 H 0.085 0.915 9 O -0.232 6.232 10 C 0.441 3.559 11 O -0.579 6.579 12 C -0.196 4.196 13 C -0.001 4.001 14 C -0.176 4.176 15 C 0.322 3.678 16 N -0.472 5.472 17 C 0.016 3.984 18 C 0.064 3.936 19 O -0.402 6.402 20 C 0.067 3.933 21 C 0.028 3.972 22 N -0.535 5.535 23 C 0.176 3.824 24 H 0.281 0.719 25 H 0.156 0.844 26 H 0.184 0.816 27 H 0.046 0.954 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -20.355 -1.045 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.103 0.897 9 O -0.140 6.140 10 C 0.291 3.709 11 O -0.479 6.479 12 C -0.201 4.201 13 C -0.026 4.026 14 C -0.198 4.198 15 C 0.089 3.911 16 N -0.189 5.189 17 C -0.109 4.109 18 C -0.013 4.013 19 O -0.321 6.321 20 C -0.010 4.010 21 C -0.099 4.099 22 N -0.250 5.250 23 C 0.018 3.982 24 H 0.090 0.910 25 H 0.174 0.826 26 H 0.201 0.799 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.917 -20.632 -0.765 21.014 hybrid contribution 1.189 1.799 -0.285 2.176 sum -2.727 -18.832 -1.050 19.058 Atomic orbital electron populations 1.70058 1.07681 1.29668 1.45831 1.26595 0.96924 1.02335 0.94466 0.84592 0.77721 0.74247 0.79605 1.18369 1.18313 1.18647 1.21521 0.92404 0.80881 1.54704 0.89717 1.83912 1.39910 1.13988 1.76143 1.21302 0.85787 0.86088 0.77750 1.90583 1.16147 1.88403 1.52748 1.20134 0.95514 0.91420 1.13020 1.21416 1.01614 0.89716 0.89877 1.21472 0.92626 0.99651 1.06028 1.20395 0.91210 0.88800 0.90671 1.59263 1.07845 1.10743 1.41071 1.23209 1.03641 0.94679 0.89352 1.22895 0.79599 0.93981 1.04778 1.87989 1.23791 1.71151 1.49138 1.22832 0.99995 0.88122 0.90064 1.22722 0.84970 0.99179 1.03067 1.67733 1.40571 0.97999 1.18673 1.22823 0.91017 0.95279 0.89056 0.90950 0.82641 0.79915 0.93584 0.86105 0.90640 0.85440 0.91071 0.86395 0.89289 0.93616 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.66 13.67 21.63 0.30 -52.37 16 2 C 0.00 -0.12 5.49 84.89 0.47 0.35 16 3 Si 1.02 43.20 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.42 -25.66 9.65 67.95 0.66 -25.00 16 8 H 0.09 5.23 6.86 -2.91 -0.02 5.21 16 9 O -0.23 -13.90 9.01 10.84 0.10 -13.80 16 10 C 0.44 23.37 7.83 70.22 0.55 23.92 16 11 O -0.58 -32.59 15.66 19.70 0.31 -32.28 16 12 C -0.20 -8.15 5.89 -20.00 -0.12 -8.26 16 13 C 0.00 -0.02 9.65 22.48 0.22 0.20 16 14 C -0.18 -4.38 9.14 22.22 0.20 -4.17 16 15 C 0.32 8.97 6.39 133.26 0.85 9.82 16 16 N -0.47 -10.30 4.74 -701.00 -3.32 -13.62 16 17 C 0.02 0.26 5.39 86.31 0.46 0.73 16 18 C 0.06 0.81 7.01 72.01 0.50 1.31 16 19 O -0.40 -7.25 10.83 -148.98 -1.61 -8.87 16 20 C 0.07 1.08 7.01 72.02 0.50 1.59 16 21 C 0.03 0.61 4.81 86.32 0.41 1.02 16 22 N -0.54 -18.24 8.66 -192.25 -1.67 -19.90 16 23 C 0.18 6.94 10.79 85.06 0.92 7.86 16 24 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.16 4.68 7.73 -2.91 -0.02 4.66 16 26 H 0.18 2.89 7.17 -2.91 -0.02 2.87 16 27 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.12 1.33 6.80 -2.38 -0.02 1.31 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.12 1.53 8.14 -2.38 -0.02 1.52 16 33 H 0.09 2.11 7.85 -2.39 -0.02 2.09 16 34 H 0.05 1.16 8.02 -2.39 -0.02 1.14 16 35 H 0.16 6.69 7.61 -2.91 -0.02 6.67 16 Total: -1.00 -75.17 303.53 2.88 -72.29 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.11 Total: 13.97 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.63 Total: 9.34 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -4.69 Total: -85.89 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -1.21 Total: -54.95 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.17 2.88 -72.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021590193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.515 kcal (2) G-P(sol) polarization free energy of solvation -75.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds