Wall clock time and date at job start Tue Mar 31 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.45864 * 2 1 4 4 C 1.38344 * 119.31253 * 179.97438 * 3 2 1 5 5 C 1.40079 * 118.28070 * 0.25657 * 4 3 2 6 6 C 1.47720 * 120.56160 * 179.74891 * 5 4 3 7 7 O 1.21469 * 119.99756 * 359.97438 * 6 5 4 8 8 O 1.34705 * 119.99788 * 179.97438 * 6 5 4 9 9 C 1.45205 * 116.99901 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47006 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00213 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99478 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99649 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47169 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99890 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00084 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99742 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00161 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46782 * 60.00178 * 18 16 14 20 20 H 1.48502 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46973 * 300.00548 * 18 16 14 22 22 C 1.39567 * 118.87203 * 359.48014 * 5 4 3 23 23 N 1.31688 * 120.55838 * 0.53054 * 22 5 4 24 24 H 1.08996 * 109.46976 * 89.99728 * 1 2 3 25 25 H 1.09002 * 109.47006 * 210.00016 * 1 2 3 26 26 H 1.08995 * 109.46852 * 329.99675 * 1 2 3 27 27 H 1.08002 * 120.34256 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.85636 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47246 * 300.00490 * 9 8 6 30 30 H 1.09005 * 109.46510 * 60.00447 * 9 8 6 31 31 H 0.96996 * 120.00378 * 0.02562 * 12 10 9 32 32 H 1.09002 * 109.47466 * 300.00092 * 13 12 10 33 33 H 1.09003 * 109.47394 * 59.99826 * 13 12 10 34 34 H 0.97007 * 119.99990 * 180.02562 * 17 16 14 35 35 H 1.07995 * 119.72478 * 180.25340 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5709 1.2012 0.0005 5 6 4.2314 -0.0341 -0.0045 6 6 5.7073 -0.0967 -0.0097 7 8 6.3586 0.9287 -0.0102 8 8 6.3308 -1.2907 -0.0140 9 6 7.7827 -1.2762 -0.0196 10 6 8.2992 -2.6920 -0.0231 11 8 7.5204 -3.6216 -0.0216 12 7 9.6267 -2.9249 -0.0280 13 6 10.1288 -4.3012 -0.0320 14 6 11.6357 -4.2861 -0.0364 15 1 12.1663 -3.3454 -0.0367 16 6 12.3370 -5.4732 -0.0402 17 7 11.6908 -6.6187 -0.0403 18 14 14.2049 -5.4546 -0.0464 19 1 14.6969 -4.7511 1.1653 20 1 14.7139 -6.8497 -0.0503 21 1 14.6888 -4.7481 -1.2596 22 6 3.4715 -1.2047 0.0013 23 7 2.1558 -1.1488 0.0008 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6442 2.1381 0.0004 28 1 4.1272 2.1269 0.0001 29 1 8.1375 -0.7573 -0.9101 30 1 8.1443 -0.7602 0.8699 31 1 10.2496 -2.1814 -0.0288 32 1 9.7737 -4.8202 0.8583 33 1 9.7676 -4.8172 -0.9216 34 1 12.1842 -7.4539 -0.0426 35 1 3.9665 -2.1645 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022474288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:49 Heat of formation + Delta-G solvation = -92.444593 kcal Electronic energy + Delta-G solvation = -19941.517678 eV Core-core repulsion = 16518.631632 eV Total energy + Delta-G solvation = -3422.886045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06710 -39.99813 -38.69027 -36.45495 -34.27401 -33.55794 -32.75461 -32.42720 -29.63271 -28.35226 -26.61575 -24.17705 -23.57732 -22.52640 -21.17023 -19.97806 -18.45272 -17.71590 -16.94864 -16.70803 -16.33477 -16.10102 -15.55450 -15.13061 -14.99159 -14.60322 -14.51952 -14.11720 -13.56673 -13.16432 -13.10238 -12.72169 -12.67227 -12.56539 -12.44026 -12.00511 -11.80069 -11.05148 -10.95048 -10.92435 -10.77210 -10.35878 -10.32821 -9.83913 -9.47045 -9.41224 -9.21752 -8.79303 -8.01192 -6.20528 -4.28187 0.17402 0.84672 2.26155 2.26835 3.14201 3.23589 3.28551 3.29935 3.42006 3.79597 3.96887 4.28006 4.31520 4.47315 4.48899 4.67730 4.86364 5.06911 5.13188 5.15256 5.17431 5.19139 5.29971 5.32428 5.56154 5.61851 5.74122 6.16987 6.21420 7.20420 7.27608 7.44209 7.46785 7.55900 7.61019 7.90702 8.47298 8.68982 8.93597 9.38137 10.89507 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.048693 B = 0.002637 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.890993 B =10614.959148 C =11164.095972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.158 3.842 3 C -0.187 4.187 4 C -0.008 4.008 5 C -0.184 4.184 6 C 0.515 3.485 7 O -0.507 6.507 8 O -0.323 6.323 9 C 0.050 3.950 10 C 0.500 3.500 11 O -0.533 6.533 12 N -0.706 5.706 13 C 0.251 3.749 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.172 3.828 23 N -0.491 5.491 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.393 0.607 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 17.036 0.066 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.021 3.979 3 C -0.207 4.207 4 C -0.033 4.033 5 C -0.188 4.188 6 C 0.359 3.641 7 O -0.396 6.396 8 O -0.238 6.238 9 C -0.027 4.027 10 C 0.282 3.718 11 O -0.411 6.411 12 N -0.356 5.356 13 C 0.131 3.869 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.014 3.986 23 N -0.201 5.201 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.226 0.774 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.999 15.625 0.067 24.598 hybrid contribution 2.104 1.203 -0.016 2.424 sum -16.895 16.827 0.051 23.845 Atomic orbital electron populations 1.20829 0.88262 1.04007 1.03611 1.21713 0.97599 0.88410 0.90191 1.21935 0.94151 0.99745 1.04886 1.21728 0.94265 0.97472 0.89846 1.20127 0.90643 0.96192 1.11816 1.20907 0.88564 0.81753 0.72891 1.90836 1.67230 1.35421 1.46156 1.86582 1.22116 1.31679 1.83402 1.22924 0.77027 0.97979 1.04798 1.19851 0.83924 0.89133 0.78847 1.90712 1.55983 1.44806 1.49550 1.46364 1.04602 1.12271 1.72374 1.19181 0.93782 0.75847 0.98066 1.21167 0.90449 0.93149 1.53708 0.91812 1.24954 0.99289 0.95146 0.94594 1.69962 1.36130 0.97537 1.48524 0.86443 0.84307 0.77253 0.78722 1.20029 1.21040 1.20034 1.23430 0.88823 0.98547 0.87850 1.67715 1.09590 1.28878 1.13894 0.89741 0.89904 0.90275 0.83750 0.83255 0.88287 0.88294 0.77401 0.95216 0.95215 0.92292 0.80411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.01 0.37 -0.23 16 2 C 0.16 1.39 6.78 -82.50 -0.56 0.83 16 3 C -0.19 -1.41 9.72 -39.50 -0.38 -1.79 16 4 C -0.01 -0.07 9.72 -38.85 -0.38 -0.45 16 5 C -0.18 -2.16 5.89 -104.84 -0.62 -2.78 16 6 C 0.51 7.12 7.91 34.61 0.27 7.39 16 7 O -0.51 -7.61 16.21 -19.24 -0.31 -7.92 16 8 O -0.32 -5.00 9.03 -47.18 -0.43 -5.42 16 9 C 0.05 0.74 5.95 36.01 0.21 0.96 16 10 C 0.50 9.81 7.91 -10.98 -0.09 9.72 16 11 O -0.53 -12.76 16.50 -14.10 -0.23 -13.00 16 12 N -0.71 -14.37 5.55 -61.47 -0.34 -14.71 16 13 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 14 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 15 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 18 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.17 2.04 10.79 -17.12 -0.18 1.85 16 23 N -0.49 -5.64 10.25 -9.12 -0.09 -5.74 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 27 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 28 H 0.15 1.20 7.74 -52.49 -0.41 0.79 16 29 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.18 2.13 7.62 -52.49 -0.40 1.73 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -33.76 321.24 -6.71 -40.47 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.06 Total: 2.11 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.80 Total: 8.79 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.30 Total: -45.45 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.97 Total: -26.34 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.76 -6.71 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022474288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.976 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds