Wall clock time and date at job start Tue Mar 31 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.45864 * 2 1 4 4 C 1.38344 * 119.31253 * 179.97438 * 3 2 1 5 5 C 1.40079 * 118.28070 * 0.25657 * 4 3 2 6 6 C 1.47720 * 120.56160 * 179.74891 * 5 4 3 7 7 O 1.21469 * 119.99756 * 359.97438 * 6 5 4 8 8 O 1.34705 * 119.99788 * 179.97438 * 6 5 4 9 9 C 1.45205 * 116.99901 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47006 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00213 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99478 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99649 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47169 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99890 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00084 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99742 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00161 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46782 * 60.00178 * 18 16 14 20 20 H 1.48502 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46973 * 300.00548 * 18 16 14 22 22 C 1.39567 * 118.87203 * 359.48014 * 5 4 3 23 23 N 1.31688 * 120.55838 * 0.53054 * 22 5 4 24 24 H 1.08996 * 109.46976 * 89.99728 * 1 2 3 25 25 H 1.09002 * 109.47006 * 210.00016 * 1 2 3 26 26 H 1.08995 * 109.46852 * 329.99675 * 1 2 3 27 27 H 1.08002 * 120.34256 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.85636 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47246 * 300.00490 * 9 8 6 30 30 H 1.09005 * 109.46510 * 60.00447 * 9 8 6 31 31 H 0.96996 * 120.00378 * 0.02562 * 12 10 9 32 32 H 1.09002 * 109.47466 * 300.00092 * 13 12 10 33 33 H 1.09003 * 109.47394 * 59.99826 * 13 12 10 34 34 H 0.97007 * 119.99990 * 180.02562 * 17 16 14 35 35 H 1.07995 * 119.72478 * 180.25340 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5709 1.2012 0.0005 5 6 4.2314 -0.0341 -0.0045 6 6 5.7073 -0.0967 -0.0097 7 8 6.3586 0.9287 -0.0102 8 8 6.3308 -1.2907 -0.0140 9 6 7.7827 -1.2762 -0.0196 10 6 8.2992 -2.6920 -0.0231 11 8 7.5204 -3.6216 -0.0216 12 7 9.6267 -2.9249 -0.0280 13 6 10.1288 -4.3012 -0.0320 14 6 11.6357 -4.2861 -0.0364 15 1 12.1663 -3.3454 -0.0367 16 6 12.3370 -5.4732 -0.0402 17 7 11.6908 -6.6187 -0.0403 18 14 14.2049 -5.4546 -0.0464 19 1 14.6969 -4.7511 1.1653 20 1 14.7139 -6.8497 -0.0503 21 1 14.6888 -4.7481 -1.2596 22 6 3.4715 -1.2047 0.0013 23 7 2.1558 -1.1488 0.0008 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6442 2.1381 0.0004 28 1 4.1272 2.1269 0.0001 29 1 8.1375 -0.7573 -0.9101 30 1 8.1443 -0.7602 0.8699 31 1 10.2496 -2.1814 -0.0288 32 1 9.7737 -4.8202 0.8583 33 1 9.7676 -4.8172 -0.9216 34 1 12.1842 -7.4539 -0.0426 35 1 3.9665 -2.1645 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022474288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:47 Heat of formation + Delta-G solvation = -115.769179 kcal Electronic energy + Delta-G solvation = -19942.529107 eV Core-core repulsion = 16518.631632 eV Total energy + Delta-G solvation = -3423.897475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.03947 -41.01753 -40.25248 -37.64467 -36.19409 -34.43413 -34.27590 -33.47548 -30.98844 -29.39418 -28.23532 -25.07286 -24.75325 -24.03496 -22.12299 -21.66973 -19.57775 -19.12429 -18.28104 -17.88856 -17.45058 -17.31703 -16.87575 -16.72588 -16.27211 -16.07524 -15.48035 -15.18424 -14.62964 -14.52989 -14.26816 -14.08682 -13.80940 -13.71776 -13.29100 -13.21119 -13.02100 -12.96231 -12.68511 -12.24521 -12.02317 -11.97791 -11.52905 -11.08289 -10.93647 -10.80997 -10.61543 -10.13641 -9.94014 -8.29686 -6.46471 -0.64151 0.12417 1.12098 1.29214 1.44391 1.47791 1.54087 1.56223 2.32370 2.52740 2.63897 3.05429 3.14849 3.54233 3.64351 3.70082 3.73971 3.91551 4.02715 4.03707 4.22941 4.65106 4.68545 4.79943 4.87228 5.03328 5.06255 5.13379 5.15591 5.21398 5.40881 5.54557 5.62185 5.81630 6.41160 6.62221 6.76333 6.79480 7.19864 7.34902 8.82168 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.048693 B = 0.002637 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.890993 B =10614.959148 C =11164.095972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.151 3.849 3 C -0.172 4.172 4 C -0.008 4.008 5 C -0.202 4.202 6 C 0.520 3.480 7 O -0.520 6.520 8 O -0.342 6.342 9 C 0.061 3.939 10 C 0.499 3.501 11 O -0.583 6.583 12 N -0.698 5.698 13 C 0.266 3.734 14 C -0.558 4.558 15 H 0.087 0.913 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 C 0.158 3.842 23 N -0.518 5.518 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.187 0.813 28 H 0.165 0.835 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.413 0.587 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.269 0.731 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.289 20.226 0.059 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.014 3.986 3 C -0.191 4.191 4 C -0.033 4.033 5 C -0.206 4.206 6 C 0.365 3.635 7 O -0.410 6.410 8 O -0.258 6.258 9 C -0.015 4.015 10 C 0.285 3.715 11 O -0.463 6.463 12 N -0.350 5.350 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.105 0.895 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.187 1.187 22 C 0.001 3.999 23 N -0.228 5.228 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.204 0.796 28 H 0.182 0.818 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.249 0.751 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.078 0.922 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.070 18.877 0.060 26.833 hybrid contribution 1.948 0.243 -0.014 1.963 sum -17.122 19.120 0.046 25.666 Atomic orbital electron populations 1.20962 0.85750 1.05128 1.04685 1.22393 0.99286 0.88139 0.88759 1.22362 0.93406 1.00887 1.02423 1.22001 0.95219 0.96877 0.89176 1.20112 0.89322 0.97260 1.13865 1.21194 0.89245 0.80884 0.72163 1.90816 1.67611 1.35432 1.47148 1.86581 1.22291 1.33090 1.83821 1.22807 0.77231 0.93997 1.07478 1.20661 0.83038 0.90950 0.76839 1.90691 1.57097 1.47089 1.51430 1.46030 1.05645 1.10786 1.72498 1.18629 0.94145 0.78215 0.94604 1.21583 0.90580 0.94239 1.53147 0.89541 1.26065 1.05089 0.94603 0.93843 1.70129 1.38509 0.98441 1.49769 0.85195 0.77179 0.77269 0.79503 1.18646 1.21207 1.18658 1.23240 0.89391 0.98290 0.89023 1.67719 1.09306 1.30787 1.14999 0.88487 0.90652 0.87314 0.79589 0.81770 0.85458 0.85469 0.75053 0.98965 0.98961 0.92202 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.16 71.24 0.72 -0.15 16 2 C 0.15 2.35 6.78 42.57 0.29 2.64 16 3 C -0.17 -2.03 9.72 22.32 0.22 -1.82 16 4 C -0.01 -0.12 9.72 22.74 0.22 0.10 16 5 C -0.20 -4.67 5.89 -20.00 -0.12 -4.79 16 6 C 0.52 14.12 7.91 70.33 0.56 14.68 16 7 O -0.52 -14.81 16.21 19.94 0.32 -14.49 16 8 O -0.34 -10.65 9.03 -49.76 -0.45 -11.10 16 9 C 0.06 1.76 5.95 71.24 0.42 2.18 16 10 C 0.50 19.96 7.91 87.66 0.69 20.65 16 11 O -0.58 -29.29 16.50 15.79 0.26 -29.03 16 12 N -0.70 -28.69 5.55 -466.79 -2.59 -31.28 16 13 C 0.27 14.39 5.43 85.63 0.46 14.85 16 14 C -0.56 -29.80 9.28 25.60 0.24 -29.56 16 15 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 16 C 0.00 0.21 5.46 84.66 0.46 0.67 16 17 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 18 Si 0.99 41.85 29.54 68.60 2.03 43.88 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 20 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 C 0.16 3.91 10.79 85.04 0.92 4.82 16 23 N -0.52 -11.86 10.25 -182.78 -1.87 -13.73 16 24 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 0.26 8.07 -2.39 -0.02 0.24 16 27 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 28 H 0.16 2.18 7.74 -2.91 -0.02 2.16 16 29 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.13 2.97 8.14 -2.38 -0.02 2.95 16 31 H 0.41 13.55 8.32 -92.71 -0.77 12.78 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 35 H 0.16 4.30 7.62 -2.91 -0.02 4.28 16 Total: -1.00 -76.65 321.24 3.42 -73.23 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.35 Total: 13.66 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 5.09 Total: 24.28 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -4.18 Total: -100.42 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: 0.13 Total: -54.62 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -76.65 3.42 -73.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022474288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.537 kcal (2) G-P(sol) polarization free energy of solvation -76.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds