Wall clock time and date at job start Mon Mar 30 2020 23:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99539 * 2 1 4 4 H 1.48499 * 109.47103 * 240.00513 * 3 2 1 5 5 H 1.48496 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46689 * 120.00112 * 3 2 1 7 7 C 1.37874 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47076 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00182 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00151 * 179.97438 * 11 10 9 14 14 O 1.42904 * 109.47435 * 180.02562 * 13 11 10 15 15 C 1.35710 * 117.00085 * 180.02562 * 14 13 11 16 16 C 1.39004 * 119.90917 * 180.02562 * 15 14 13 17 17 C 1.37696 * 120.08537 * 180.02562 * 16 15 14 18 18 C 1.39738 * 119.91323 * 359.97438 * 17 16 15 19 19 C 1.47600 * 120.08720 * 180.02562 * 18 17 16 20 20 N 1.34784 * 119.99996 * 180.02562 * 19 18 17 21 21 O 1.21588 * 120.00146 * 359.97438 * 19 18 17 22 22 C 1.39735 * 119.82583 * 0.27592 * 18 17 16 23 23 C 1.37708 * 119.90544 * 359.46580 * 22 18 17 24 24 H 0.97000 * 120.00610 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47083 * 60.00832 * 9 7 2 26 26 H 1.08996 * 109.47375 * 300.00442 * 9 7 2 27 27 H 0.97004 * 119.99525 * 0.02562 * 10 9 7 28 28 H 1.09010 * 109.46993 * 60.00791 * 13 11 10 29 29 H 1.08996 * 109.47418 * 300.00561 * 13 11 10 30 30 H 1.07995 * 119.95399 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.04377 * 179.97438 * 17 16 15 32 32 H 0.97000 * 119.99339 * 359.97438 * 20 19 18 33 33 H 0.96995 * 120.00015 * 179.72403 * 20 19 18 34 34 H 1.07997 * 120.04683 * 179.73081 * 22 18 17 35 35 H 1.07996 * 119.95407 * 180.24853 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8832 0.0000 12 8 0.5617 -5.1049 0.0000 13 6 2.7334 -6.0286 -0.0006 14 8 2.0190 -7.2663 -0.0005 15 6 2.7582 -8.4044 -0.0004 16 6 2.1253 -9.6420 -0.0008 17 6 2.8717 -10.7990 -0.0003 18 6 4.2673 -10.7280 0.0002 19 6 5.0712 -11.9658 0.0003 20 7 6.4172 -11.8952 0.0013 21 8 4.5193 -13.0492 0.0004 22 6 4.8998 -9.4819 0.0060 23 6 4.1461 -8.3294 0.0000 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8896 27 1 3.1569 -3.4352 -0.0002 28 1 3.3607 -5.9708 0.8891 29 1 3.3594 -5.9710 -0.8910 30 1 1.0467 -9.6960 -0.0016 31 1 2.3793 -11.7602 -0.0002 32 1 6.8575 -11.0309 0.0016 33 1 6.9455 -12.7087 0.0054 34 1 5.9781 -9.4229 0.0107 35 1 4.6341 -7.3660 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023626190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:56 Heat of formation + Delta-G solvation = -91.301639 kcal Electronic energy + Delta-G solvation = -19853.899901 eV Core-core repulsion = 16431.063418 eV Total energy + Delta-G solvation = -3422.836483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72588 -39.70690 -38.62473 -37.04192 -34.32606 -34.15290 -32.47341 -31.40674 -30.58872 -28.92783 -26.72317 -23.97904 -23.27180 -22.38420 -20.85148 -19.94919 -18.87376 -17.96253 -17.57440 -17.00913 -16.37042 -15.96567 -15.48764 -15.30594 -15.06418 -15.01320 -14.32638 -14.27304 -14.20796 -13.75463 -13.24969 -12.90161 -12.75759 -12.48109 -12.04267 -11.88663 -11.22402 -11.18142 -11.06617 -10.92258 -10.39253 -10.38617 -10.07350 -9.50884 -9.40761 -9.24746 -8.82979 -8.52494 -8.05279 -6.23798 -4.31915 0.61412 1.01669 2.58174 2.69319 3.09374 3.18453 3.20258 3.25601 3.26904 3.57004 4.03350 4.28444 4.34094 4.51223 4.58930 4.76990 4.93898 5.04665 5.11783 5.12492 5.22396 5.33851 5.61277 5.79225 5.94761 6.02180 6.33220 6.43282 6.96541 7.05973 7.18776 7.26487 7.40551 7.55110 7.87205 7.92257 8.42989 8.65490 8.89932 9.34592 10.86216 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047173 B = 0.002533 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.420276 B =11051.834569 C =11624.806930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.531 6.531 13 C 0.037 3.963 14 O -0.280 6.280 15 C 0.167 3.833 16 C -0.159 4.159 17 C -0.016 4.016 18 C -0.191 4.191 19 C 0.570 3.430 20 N -0.854 5.854 21 O -0.546 6.546 22 C -0.041 4.041 23 C -0.223 4.223 24 H 0.268 0.732 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.392 0.608 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.400 0.600 33 H 0.404 0.596 34 H 0.128 0.872 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.691 -18.044 0.014 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.408 6.408 13 C -0.042 4.042 14 O -0.191 6.191 15 C 0.120 3.880 16 C -0.178 4.178 17 C -0.035 4.035 18 C -0.194 4.194 19 C 0.357 3.643 20 N -0.418 5.418 21 O -0.424 6.424 22 C -0.060 4.060 23 C -0.241 4.241 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.225 0.775 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.230 0.770 33 H 0.234 0.766 34 H 0.146 0.854 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.892 -18.608 0.011 22.638 hybrid contribution 1.693 1.327 0.007 2.151 sum 14.585 -17.281 0.017 22.613 Atomic orbital electron populations 1.69959 1.06128 1.27597 1.48405 1.24958 0.94939 0.99507 0.94576 0.86445 0.79401 0.82192 0.78697 1.20028 1.21018 1.20035 1.21147 0.93240 0.90291 1.53842 0.91843 1.19177 0.88158 0.81499 0.98065 1.46359 1.11446 1.05360 1.72503 1.19835 0.89119 0.83937 0.78916 1.90728 1.16352 1.84464 1.49279 1.22737 0.95219 0.82667 1.03553 1.86197 1.34321 1.11771 1.86785 1.19457 0.90050 0.86954 0.91579 1.20494 1.01394 0.88952 1.06968 1.21064 0.92044 0.98475 0.91929 1.19709 0.94435 0.92608 1.12695 1.18193 0.82300 0.88875 0.74957 1.43758 1.07095 1.12531 1.78435 1.90819 1.71640 1.29763 1.50214 1.21012 0.99408 0.91061 0.94534 1.21248 0.92724 0.99958 1.10217 0.92254 0.95240 0.95254 0.77519 0.89051 0.89051 0.84004 0.83927 0.77035 0.76555 0.85406 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.19 29.54 -169.99 -5.02 15.16 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 10 N -0.71 -13.78 5.55 -61.48 -0.34 -14.13 16 11 C 0.50 9.46 7.91 -10.99 -0.09 9.38 16 12 O -0.53 -12.79 16.50 -14.35 -0.24 -13.02 16 13 C 0.04 0.48 5.21 36.00 0.19 0.67 16 14 O -0.28 -4.14 9.66 -38.74 -0.37 -4.51 16 15 C 0.17 1.99 6.70 -39.02 -0.26 1.73 16 16 C -0.16 -1.79 9.97 -39.50 -0.39 -2.18 16 17 C -0.02 -0.17 9.58 -39.22 -0.38 -0.55 16 18 C -0.19 -1.84 5.88 -104.96 -0.62 -2.46 16 19 C 0.57 5.67 8.04 -12.44 -0.10 5.57 16 20 N -0.85 -4.73 8.82 30.47 0.27 -4.46 16 21 O -0.55 -7.57 17.18 5.29 0.09 -7.48 16 22 C -0.04 -0.32 9.53 -39.22 -0.37 -0.69 16 23 C -0.22 -2.02 9.01 -39.50 -0.36 -2.38 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.39 6.19 8.32 -40.82 -0.34 5.85 16 28 H 0.09 0.90 7.65 -51.92 -0.40 0.51 16 29 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 32 H 0.40 1.09 6.85 -40.82 -0.28 0.81 16 33 H 0.40 1.73 8.93 -40.82 -0.36 1.37 16 34 H 0.13 0.51 6.39 -52.49 -0.34 0.18 16 35 H 0.14 0.95 6.28 -52.49 -0.33 0.62 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -35.62 313.80 -6.62 -42.23 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.65 Total: 3.65 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.82 Total: 2.52 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.66 Total: -43.28 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.52 Total: -25.01 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.62 -6.62 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023626190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.067 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds