Wall clock time and date at job start Mon Mar 30 2020 23:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99539 * 2 1 4 4 H 1.48499 * 109.47103 * 240.00513 * 3 2 1 5 5 H 1.48496 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46689 * 120.00112 * 3 2 1 7 7 C 1.37874 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47076 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00182 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00151 * 179.97438 * 11 10 9 14 14 O 1.42904 * 109.47435 * 180.02562 * 13 11 10 15 15 C 1.35710 * 117.00085 * 180.02562 * 14 13 11 16 16 C 1.39004 * 119.90917 * 180.02562 * 15 14 13 17 17 C 1.37696 * 120.08537 * 180.02562 * 16 15 14 18 18 C 1.39738 * 119.91323 * 359.97438 * 17 16 15 19 19 C 1.47600 * 120.08720 * 180.02562 * 18 17 16 20 20 N 1.34784 * 119.99996 * 180.02562 * 19 18 17 21 21 O 1.21588 * 120.00146 * 359.97438 * 19 18 17 22 22 C 1.39735 * 119.82583 * 0.27592 * 18 17 16 23 23 C 1.37708 * 119.90544 * 359.46580 * 22 18 17 24 24 H 0.97000 * 120.00610 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47083 * 60.00832 * 9 7 2 26 26 H 1.08996 * 109.47375 * 300.00442 * 9 7 2 27 27 H 0.97004 * 119.99525 * 0.02562 * 10 9 7 28 28 H 1.09010 * 109.46993 * 60.00791 * 13 11 10 29 29 H 1.08996 * 109.47418 * 300.00561 * 13 11 10 30 30 H 1.07995 * 119.95399 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.04377 * 179.97438 * 17 16 15 32 32 H 0.97000 * 119.99339 * 359.97438 * 20 19 18 33 33 H 0.96995 * 120.00015 * 179.72403 * 20 19 18 34 34 H 1.07997 * 120.04683 * 179.73081 * 22 18 17 35 35 H 1.07996 * 119.95407 * 180.24853 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8832 0.0000 12 8 0.5617 -5.1049 0.0000 13 6 2.7334 -6.0286 -0.0006 14 8 2.0190 -7.2663 -0.0005 15 6 2.7582 -8.4044 -0.0004 16 6 2.1253 -9.6420 -0.0008 17 6 2.8717 -10.7990 -0.0003 18 6 4.2673 -10.7280 0.0002 19 6 5.0712 -11.9658 0.0003 20 7 6.4172 -11.8952 0.0013 21 8 4.5193 -13.0492 0.0004 22 6 4.8998 -9.4819 0.0060 23 6 4.1461 -8.3294 0.0000 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8896 27 1 3.1569 -3.4352 -0.0002 28 1 3.3607 -5.9708 0.8891 29 1 3.3594 -5.9710 -0.8910 30 1 1.0467 -9.6960 -0.0016 31 1 2.3793 -11.7602 -0.0002 32 1 6.8575 -11.0309 0.0016 33 1 6.9455 -12.7087 0.0054 34 1 5.9781 -9.4229 0.0107 35 1 4.6341 -7.3660 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023626190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:56 Heat of formation + Delta-G solvation = -120.214208 kcal Electronic energy + Delta-G solvation = -19855.153644 eV Core-core repulsion = 16431.063418 eV Total energy + Delta-G solvation = -3424.090226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60480 -40.73989 -39.92883 -37.96716 -36.18162 -34.83455 -34.40568 -32.15628 -31.46838 -30.29854 -28.35211 -24.98430 -24.52744 -23.63084 -21.74144 -21.39850 -19.65882 -19.10079 -18.74014 -17.93921 -17.48375 -17.43719 -16.97492 -16.52767 -16.05117 -15.88235 -15.75756 -15.64674 -15.09818 -14.66687 -14.38436 -14.10017 -14.09939 -13.87672 -13.41317 -13.38654 -12.94949 -12.66879 -12.23941 -12.09764 -11.94944 -11.51613 -11.20699 -10.86285 -10.79518 -10.69918 -10.12422 -9.91479 -9.33913 -8.28406 -6.45462 -0.15534 0.30264 1.44813 1.49155 1.56542 1.60403 1.62534 1.82022 2.38059 2.58005 2.80804 2.82638 3.06905 3.60887 3.82069 3.85175 3.95820 4.05449 4.13976 4.20340 4.40158 4.54474 4.94409 5.05130 5.10139 5.19731 5.22232 5.30407 5.43685 5.57915 5.66036 5.83124 5.90467 6.25748 6.45288 6.64459 6.82076 7.22943 7.32110 7.41118 8.83525 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047173 B = 0.002533 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.420276 B =11051.834569 C =11624.806930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.090 0.910 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.494 3.506 12 O -0.593 6.593 13 C 0.050 3.950 14 O -0.317 6.317 15 C 0.146 3.854 16 C -0.175 4.175 17 C -0.027 4.027 18 C -0.197 4.197 19 C 0.566 3.434 20 N -0.829 5.829 21 O -0.595 6.595 22 C -0.027 4.027 23 C -0.215 4.215 24 H 0.268 0.732 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.415 0.585 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.417 0.583 33 H 0.413 0.587 34 H 0.174 0.826 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.315 -17.501 0.018 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.108 0.892 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.280 3.720 12 O -0.474 6.474 13 C -0.027 4.027 14 O -0.229 6.229 15 C 0.099 3.901 16 C -0.194 4.194 17 C -0.046 4.046 18 C -0.200 4.200 19 C 0.354 3.646 20 N -0.394 5.394 21 O -0.477 6.477 22 C -0.045 4.045 23 C -0.233 4.233 24 H 0.077 0.923 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.252 0.748 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.250 0.750 33 H 0.245 0.755 34 H 0.192 0.808 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.635 -18.075 0.014 25.253 hybrid contribution 0.272 1.048 0.005 1.082 sum 17.907 -17.027 0.020 24.710 Atomic orbital electron populations 1.70138 1.08370 1.28664 1.49908 1.26094 0.95748 1.04026 0.93898 0.85190 0.77852 0.76481 0.79593 1.18496 1.21504 1.18506 1.21585 0.94512 0.90231 1.52936 0.89217 1.18593 0.88697 0.84104 0.94320 1.45991 1.11677 1.04636 1.72561 1.20964 0.89479 0.85001 0.76567 1.90702 1.19627 1.85422 1.51652 1.22700 0.92931 0.79688 1.07394 1.86128 1.36164 1.12852 1.87784 1.19634 0.91393 0.85774 0.93280 1.20516 1.01313 0.89576 1.07996 1.21075 0.92985 0.97956 0.92574 1.19865 0.94011 0.93665 1.12500 1.18300 0.83514 0.88167 0.74656 1.43555 1.05587 1.14065 1.76164 1.90802 1.72815 1.31327 1.52770 1.21440 1.01545 0.89405 0.92097 1.21588 0.91226 1.01855 1.08655 0.92283 0.99330 0.99344 0.74839 0.84927 0.84938 0.84932 0.84528 0.74986 0.75526 0.80846 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.99 40.69 29.54 68.60 2.03 42.71 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.55 -28.71 9.28 25.60 0.24 -28.48 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.00 5.43 85.63 0.46 14.46 16 10 N -0.70 -26.81 5.55 -466.81 -2.59 -29.40 16 11 C 0.49 18.60 7.91 87.66 0.69 19.30 16 12 O -0.59 -29.87 16.50 16.00 0.26 -29.60 16 13 C 0.05 1.15 5.21 71.24 0.37 1.52 16 14 O -0.32 -9.06 9.66 -71.27 -0.69 -9.75 16 15 C 0.15 3.23 6.70 22.63 0.15 3.39 16 16 C -0.18 -4.00 9.97 22.33 0.22 -3.78 16 17 C -0.03 -0.56 9.58 22.50 0.22 -0.35 16 18 C -0.20 -3.39 5.88 -20.08 -0.12 -3.51 16 19 C 0.57 10.23 8.04 86.71 0.70 10.92 16 20 N -0.83 -6.39 8.82 -175.75 -1.55 -7.94 16 21 O -0.59 -16.36 17.18 -3.99 -0.07 -16.43 16 22 C -0.03 -0.29 9.53 22.51 0.21 -0.08 16 23 C -0.21 -2.98 9.01 22.33 0.20 -2.78 16 24 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 27 H 0.41 11.99 8.32 -92.71 -0.77 11.22 16 28 H 0.13 1.97 7.65 -2.38 -0.02 1.95 16 29 H 0.13 1.97 7.65 -2.39 -0.02 1.96 16 30 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 31 H 0.14 2.91 7.64 -2.91 -0.02 2.89 16 32 H 0.42 0.26 6.85 -92.71 -0.64 -0.38 16 33 H 0.41 2.31 8.93 -92.71 -0.83 1.48 16 34 H 0.17 0.25 6.39 -2.91 -0.02 0.23 16 35 H 0.17 1.23 6.28 -2.91 -0.02 1.21 16 Total: -1.00 -84.32 313.80 0.43 -83.89 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -1.06 Total: 10.30 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 3.81 Total: 11.18 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.86 Total: -92.30 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.49 Total: -55.78 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -84.32 0.43 -83.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023626190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.321 kcal (2) G-P(sol) polarization free energy of solvation -84.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds