Wall clock time and date at job start Tue Mar 31 2020 00:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38632 * 119.54680 * 2 1 4 4 C 1.38587 * 119.35656 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.25170 * 4 3 2 6 6 C 1.39304 * 119.05973 * 359.48120 * 5 4 3 7 7 C 1.48068 * 119.72770 * 180.27421 * 6 5 4 8 8 O 1.21435 * 120.00004 * 0.25283 * 7 6 5 9 9 O 1.34680 * 120.00057 * 180.25199 * 7 6 5 10 10 C 1.45200 * 116.99654 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00366 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00052 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00143 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46840 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00299 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99584 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00392 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46844 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46706 * 120.00055 * 19 17 15 22 22 H 1.48502 * 109.47134 * 239.99848 * 19 17 15 23 23 N 1.31479 * 119.55037 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46987 * 90.00305 * 1 2 3 25 25 H 1.08997 * 109.46864 * 210.00609 * 1 2 3 26 26 H 1.08994 * 109.47018 * 330.00053 * 1 2 3 27 27 H 1.07996 * 120.32139 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.46741 * 179.75133 * 5 4 3 30 30 H 1.08996 * 109.47518 * 300.00091 * 10 9 7 31 31 H 1.09005 * 109.47285 * 60.00823 * 10 9 7 32 32 H 0.96998 * 119.99605 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47019 * 300.00775 * 14 13 11 34 34 H 1.08997 * 109.46751 * 60.00042 * 14 13 11 35 35 H 0.96993 * 120.00486 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2060 0.0000 4 6 3.5765 1.2014 0.0005 5 6 4.2337 -0.0192 -0.0043 6 6 3.4823 -1.1922 0.0015 7 6 4.1690 -2.5040 0.0027 8 8 5.3823 -2.5542 0.0031 9 8 3.4480 -3.6416 0.0031 10 6 4.1879 -4.8909 0.0037 11 6 3.2213 -6.0471 0.0048 12 8 2.0265 -5.8387 0.0047 13 7 3.6846 -7.3128 0.0049 14 6 2.7449 -8.4368 0.0055 15 6 3.5128 -9.7334 0.0061 16 1 4.5928 -9.7215 0.0057 17 6 2.8366 -10.9350 0.0062 18 7 1.5216 -10.9496 0.0062 19 14 3.7885 -12.5424 0.0063 20 1 5.2453 -12.2549 0.0069 21 1 3.4383 -13.3249 1.2188 22 1 3.4383 -13.3251 -1.2062 23 7 2.1554 -1.1438 0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6485 2.1401 -0.0004 28 1 4.1318 2.1278 0.0001 29 1 5.3129 -0.0601 -0.0081 30 1 4.8152 -4.9421 -0.8862 31 1 4.8151 -4.9414 0.8938 32 1 4.6401 -7.4795 0.0046 33 1 2.1179 -8.3857 0.8956 34 1 2.1174 -8.3861 -0.8843 35 1 1.0459 -11.7949 0.0066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027512501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:52 Heat of formation + Delta-G solvation = -87.381689 kcal Electronic energy + Delta-G solvation = -20065.702341 eV Core-core repulsion = 16643.035839 eV Total energy + Delta-G solvation = -3422.666502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.06164 -39.93752 -38.60894 -36.40053 -34.20787 -33.39505 -32.94839 -32.37844 -29.28599 -28.12492 -26.78857 -25.13065 -22.81701 -22.42481 -21.21453 -19.89402 -18.46598 -17.54163 -16.89536 -16.66756 -16.38010 -16.20099 -15.48858 -15.07410 -15.00565 -14.52190 -14.36699 -14.12816 -13.48153 -13.10053 -13.08010 -12.64484 -12.58505 -12.44094 -12.22469 -11.97505 -11.73569 -11.00644 -10.94786 -10.93003 -10.67788 -10.32882 -10.32729 -9.84840 -9.40041 -9.39607 -9.12439 -8.76446 -7.94959 -6.17753 -4.24967 0.19405 0.84016 2.20137 2.28826 3.22700 3.23827 3.30714 3.33860 3.45907 3.67347 4.04593 4.29623 4.34372 4.54795 4.57579 4.62723 4.96257 5.14454 5.18251 5.18343 5.24361 5.25948 5.35851 5.37869 5.63478 5.65502 5.80190 6.16930 6.23805 7.25074 7.32147 7.38065 7.49029 7.62794 7.71603 7.94245 8.53660 8.74371 9.00717 9.41386 10.92472 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002841 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.764392 B = 9854.643065 C =10563.657599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.127 3.873 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.114 4.114 6 C 0.101 3.899 7 C 0.522 3.478 8 O -0.502 6.502 9 O -0.302 6.302 10 C 0.045 3.955 11 C 0.499 3.501 12 O -0.529 6.529 13 N -0.707 5.707 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.429 5.429 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 25.183 -0.027 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.107 4.107 5 C -0.134 4.134 6 C -0.036 4.036 7 C 0.364 3.636 8 O -0.390 6.390 9 O -0.215 6.215 10 C -0.032 4.032 11 C 0.282 3.718 12 O -0.406 6.406 13 N -0.358 5.358 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.141 5.141 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.225 0.775 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.067 24.299 -0.026 24.492 hybrid contribution 1.595 -0.312 -0.014 1.625 sum 4.661 23.987 -0.040 24.436 Atomic orbital electron populations 1.20781 0.87904 1.04069 1.03664 1.21490 0.97640 0.87569 0.94717 1.22322 0.95066 0.99632 0.99253 1.21602 0.94431 0.98120 0.96529 1.22086 1.02260 0.91443 0.97621 1.20002 0.90014 0.90825 1.02713 1.20850 0.85149 0.84641 0.72911 1.90845 1.14175 1.87855 1.46118 1.86749 1.39093 1.13334 1.82338 1.22964 0.94375 0.81227 1.04668 1.19843 0.89092 0.83955 0.78902 1.90729 1.15925 1.84758 1.49152 1.46350 1.11410 1.05347 1.72677 1.19175 0.88451 0.81251 0.98042 1.21248 0.93345 0.90311 1.53299 0.91719 1.24958 0.94953 0.99468 0.94658 1.69983 1.06471 1.26917 1.48830 0.86341 0.79878 0.82809 0.77761 1.19610 1.20779 1.20776 1.67586 1.08132 1.29841 1.08506 0.89921 0.89658 0.90430 0.83908 0.83589 0.83108 0.88343 0.88350 0.77463 0.95254 0.95252 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.17 36.00 0.37 -0.45 16 2 C 0.13 1.29 6.78 -82.60 -0.56 0.73 16 3 C -0.14 -1.02 9.75 -39.31 -0.38 -1.40 16 4 C -0.08 -0.56 10.17 -39.31 -0.40 -0.96 16 5 C -0.11 -1.11 9.63 -39.04 -0.38 -1.48 16 6 C 0.10 1.35 6.75 -83.03 -0.56 0.79 16 7 C 0.52 8.07 7.95 34.76 0.28 8.34 16 8 O -0.50 -7.85 16.11 -19.22 -0.31 -8.16 16 9 O -0.30 -5.36 9.57 -47.12 -0.45 -5.82 16 10 C 0.05 0.73 5.95 36.01 0.21 0.94 16 11 C 0.50 10.42 7.91 -10.98 -0.09 10.33 16 12 O -0.53 -13.49 16.50 -14.10 -0.23 -13.72 16 13 N -0.71 -14.97 5.55 -61.47 -0.34 -15.31 16 14 C 0.25 6.67 5.43 -5.20 -0.03 6.64 16 15 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 16 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -26.08 13.29 55.43 0.74 -25.35 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 N -0.43 -5.99 10.03 -6.07 -0.06 -6.05 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 28 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 29 H 0.15 1.26 7.64 -52.49 -0.40 0.86 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -35.44 322.02 -6.86 -42.30 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.08 Total: 1.32 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -1.95 Total: 10.11 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.33 Total: -46.71 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.99 Total: -27.69 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.44 -6.86 -42.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027512501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.080 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds