Wall clock time and date at job start Tue Mar 31 2020 00:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38632 * 119.54680 * 2 1 4 4 C 1.38587 * 119.35656 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.25170 * 4 3 2 6 6 C 1.39304 * 119.05973 * 359.48120 * 5 4 3 7 7 C 1.48068 * 119.72770 * 180.27421 * 6 5 4 8 8 O 1.21435 * 120.00004 * 0.25283 * 7 6 5 9 9 O 1.34680 * 120.00057 * 180.25199 * 7 6 5 10 10 C 1.45200 * 116.99654 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00366 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00052 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00143 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46840 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00299 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99584 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00392 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46844 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46706 * 120.00055 * 19 17 15 22 22 H 1.48502 * 109.47134 * 239.99848 * 19 17 15 23 23 N 1.31479 * 119.55037 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46987 * 90.00305 * 1 2 3 25 25 H 1.08997 * 109.46864 * 210.00609 * 1 2 3 26 26 H 1.08994 * 109.47018 * 330.00053 * 1 2 3 27 27 H 1.07996 * 120.32139 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.46741 * 179.75133 * 5 4 3 30 30 H 1.08996 * 109.47518 * 300.00091 * 10 9 7 31 31 H 1.09005 * 109.47285 * 60.00823 * 10 9 7 32 32 H 0.96998 * 119.99605 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47019 * 300.00775 * 14 13 11 34 34 H 1.08997 * 109.46751 * 60.00042 * 14 13 11 35 35 H 0.96993 * 120.00486 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2060 0.0000 4 6 3.5765 1.2014 0.0005 5 6 4.2337 -0.0192 -0.0043 6 6 3.4823 -1.1922 0.0015 7 6 4.1690 -2.5040 0.0027 8 8 5.3823 -2.5542 0.0031 9 8 3.4480 -3.6416 0.0031 10 6 4.1879 -4.8909 0.0037 11 6 3.2213 -6.0471 0.0048 12 8 2.0265 -5.8387 0.0047 13 7 3.6846 -7.3128 0.0049 14 6 2.7449 -8.4368 0.0055 15 6 3.5128 -9.7334 0.0061 16 1 4.5928 -9.7215 0.0057 17 6 2.8366 -10.9350 0.0062 18 7 1.5216 -10.9496 0.0062 19 14 3.7885 -12.5424 0.0063 20 1 5.2453 -12.2549 0.0069 21 1 3.4383 -13.3249 1.2188 22 1 3.4383 -13.3251 -1.2062 23 7 2.1554 -1.1438 0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6485 2.1401 -0.0004 28 1 4.1318 2.1278 0.0001 29 1 5.3129 -0.0601 -0.0081 30 1 4.8152 -4.9421 -0.8862 31 1 4.8151 -4.9414 0.8938 32 1 4.6401 -7.4795 0.0046 33 1 2.1179 -8.3857 0.8956 34 1 2.1174 -8.3861 -0.8843 35 1 1.0459 -11.7949 0.0066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027512501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:51 Heat of formation + Delta-G solvation = -112.929864 kcal Electronic energy + Delta-G solvation = -20066.810193 eV Core-core repulsion = 16643.035839 eV Total energy + Delta-G solvation = -3423.774354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05727 -41.01036 -40.24975 -37.67588 -36.20522 -34.43546 -34.08281 -33.66979 -30.88873 -28.97041 -28.47978 -26.12003 -24.58836 -23.33183 -22.24926 -21.68214 -19.60805 -19.12692 -18.18485 -17.92802 -17.44415 -17.31839 -16.90577 -16.76786 -16.33964 -16.05725 -15.46626 -15.14661 -14.67549 -14.51678 -14.12940 -14.05780 -13.84605 -13.73277 -13.29727 -13.11573 -12.93239 -12.90440 -12.76250 -12.23131 -12.11609 -11.97805 -11.48074 -11.00475 -10.95928 -10.84186 -10.59693 -10.11290 -9.95292 -8.30471 -6.47330 -0.60605 0.18670 1.11280 1.20906 1.43877 1.44656 1.52657 1.58488 2.29819 2.47617 2.68378 3.01314 3.04706 3.57286 3.69438 3.82397 3.88849 3.97871 4.00864 4.02550 4.37085 4.53172 4.74022 4.79368 4.93483 5.05943 5.07124 5.10945 5.19005 5.19959 5.40340 5.59358 5.61698 5.80659 6.30321 6.61607 6.75402 6.85034 7.19154 7.34274 8.82094 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002841 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.764392 B = 9854.643065 C =10563.657599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.105 3.895 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.108 4.108 6 C 0.061 3.939 7 C 0.521 3.479 8 O -0.511 6.511 9 O -0.332 6.332 10 C 0.056 3.944 11 C 0.499 3.501 12 O -0.583 6.583 13 N -0.697 5.697 14 C 0.266 3.734 15 C -0.555 4.555 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.480 5.480 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.187 0.813 28 H 0.192 0.808 29 H 0.162 0.838 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.413 0.587 33 H -0.009 1.009 34 H -0.008 1.008 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 27.359 -0.036 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.036 4.036 3 C -0.141 4.141 4 C -0.096 4.096 5 C -0.129 4.129 6 C -0.074 4.074 7 C 0.365 3.635 8 O -0.399 6.399 9 O -0.246 6.246 10 C -0.020 4.020 11 C 0.285 3.715 12 O -0.463 6.463 13 N -0.349 5.349 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.105 0.895 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.193 5.193 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.205 0.795 28 H 0.209 0.791 29 H 0.179 0.821 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.250 0.750 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.385 26.499 -0.035 27.040 hybrid contribution 0.816 -0.817 -0.012 1.155 sum 6.201 25.682 -0.047 26.420 Atomic orbital electron populations 1.20862 0.86793 1.04486 1.04155 1.22012 0.98669 0.87927 0.95007 1.22797 0.95412 0.99933 0.96005 1.22149 0.94605 0.98499 0.94341 1.22331 1.02731 0.91291 0.96536 1.19990 0.90463 0.90609 1.06339 1.21349 0.85253 0.84669 0.72224 1.90810 1.14264 1.87956 1.46917 1.86739 1.40552 1.14307 1.83018 1.22861 0.92590 0.79165 1.07426 1.20661 0.89181 0.84824 0.76882 1.90702 1.18695 1.85592 1.51300 1.46018 1.11721 1.04570 1.72567 1.18642 0.88838 0.83602 0.94540 1.21634 0.94422 0.90305 1.52957 0.89498 1.26085 0.95877 1.03879 0.93818 1.70143 1.08687 1.28217 1.49904 0.85077 0.79070 0.77192 0.77663 1.17564 1.20466 1.20456 1.67445 1.08890 1.32440 1.10485 0.89365 0.92226 0.86987 0.79550 0.79106 0.82057 0.85414 0.85427 0.75032 0.99053 0.99049 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.17 71.24 0.72 -0.81 16 2 C 0.11 2.03 6.78 42.70 0.29 2.32 16 3 C -0.12 -1.29 9.75 22.45 0.22 -1.07 16 4 C -0.07 -0.71 10.17 22.45 0.23 -0.48 16 5 C -0.11 -1.91 9.63 22.62 0.22 -1.70 16 6 C 0.06 1.64 6.75 41.87 0.28 1.93 16 7 C 0.52 16.37 7.95 70.43 0.56 16.93 16 8 O -0.51 -15.73 16.11 20.05 0.32 -15.41 16 9 O -0.33 -12.18 9.57 -49.51 -0.47 -12.65 16 10 C 0.06 1.80 5.95 71.24 0.42 2.23 16 11 C 0.50 21.49 7.91 87.66 0.69 22.18 16 12 O -0.58 -31.54 16.50 15.77 0.26 -31.28 16 13 N -0.70 -30.08 5.55 -466.78 -2.59 -32.67 16 14 C 0.27 14.81 5.43 85.63 0.46 15.27 16 15 C -0.56 -30.29 9.28 25.60 0.24 -30.05 16 16 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 19 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 20 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 N -0.48 -13.79 10.03 -173.12 -1.74 -15.53 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 27 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 28 H 0.19 0.20 8.06 -2.91 -0.02 0.17 16 29 H 0.16 2.38 7.64 -2.91 -0.02 2.36 16 30 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 32 H 0.41 14.29 8.32 -92.71 -0.77 13.52 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -83.07 322.02 3.25 -79.82 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.35 Total: 12.07 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 4.80 Total: 27.38 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -4.04 Total: -104.45 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: 0.11 Total: -59.34 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -83.07 3.25 -79.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027512501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.107 kcal (2) G-P(sol) polarization free energy of solvation -83.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds