Wall clock time and date at job start Mon Mar 30 2020 23:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86791 * 120.00392 * 2 1 4 4 H 1.48503 * 109.47420 * 269.99869 * 3 2 1 5 5 H 1.48508 * 109.47287 * 30.00091 * 3 2 1 6 6 H 1.48505 * 109.47273 * 149.99964 * 3 2 1 7 7 C 1.38954 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00041 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99978 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00266 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47060 * 179.97438 * 12 10 9 14 14 C 1.46500 * 119.99810 * 270.00183 * 13 12 10 15 15 C 1.50702 * 109.46680 * 270.00045 * 14 13 12 16 16 O 1.20823 * 120.00250 * 0.02562 * 15 14 13 17 17 O 1.34231 * 119.99512 * 180.02562 * 15 14 13 18 18 C 1.39672 * 119.99644 * 90.00051 * 13 12 10 19 19 C 1.38918 * 120.07035 * 179.97438 * 18 13 12 20 20 C 1.38103 * 119.92232 * 180.26003 * 19 18 13 21 21 C 1.38291 * 120.07426 * 359.43747 * 20 19 18 22 22 C 1.38281 * 120.14889 * 0.56232 * 21 20 19 23 23 C 1.38103 * 120.07737 * 359.72142 * 22 21 20 24 24 H 0.96997 * 119.99354 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00585 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47052 * 60.00025 * 12 10 9 27 27 H 1.08993 * 109.47171 * 299.99763 * 12 10 9 28 28 H 1.08998 * 109.47261 * 29.99830 * 14 13 12 29 29 H 1.08996 * 109.46806 * 150.00562 * 14 13 12 30 30 H 0.96700 * 116.99567 * 180.02562 * 17 15 14 31 31 H 1.08002 * 120.03585 * 359.97438 * 19 18 13 32 32 H 1.08004 * 119.95970 * 179.72372 * 20 19 18 33 33 H 1.07994 * 119.92283 * 180.28458 * 21 20 19 34 34 H 1.07998 * 119.96595 * 179.74375 * 22 21 20 35 35 H 1.08001 * 120.04036 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9766 0.0027 14 6 2.6715 -6.5339 -1.2658 15 6 1.7546 -7.6482 -1.7003 16 8 0.8012 -7.9459 -1.0205 17 8 1.9973 -8.3099 -2.8427 18 6 2.6492 -6.5068 1.2125 19 6 3.5515 -7.5631 1.2148 20 6 3.9940 -8.0885 2.4129 21 6 3.5489 -7.5568 3.6093 22 6 2.6508 -6.5053 3.6106 23 6 2.1997 -5.9789 2.4162 24 1 -0.4849 0.8401 -0.0004 25 1 0.3533 -2.3907 0.0005 26 1 0.6172 -4.9213 -0.8880 27 1 0.6165 -4.9201 0.8919 28 1 2.6792 -5.7526 -2.0258 29 1 3.6808 -6.9239 -1.1353 30 1 1.3812 -9.0165 -3.0800 31 1 3.9029 -7.9759 0.2807 32 1 4.6921 -8.9127 2.4153 33 1 3.9001 -7.9666 4.5448 34 1 2.3019 -6.0951 4.5468 35 1 1.4979 -5.1580 2.4180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037595507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:01 Heat of formation + Delta-G solvation = -82.887571 kcal Electronic energy + Delta-G solvation = -21327.581464 eV Core-core repulsion = 17905.109842 eV Total energy + Delta-G solvation = -3422.471622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43811 -39.23875 -38.02984 -36.29919 -35.45838 -33.89864 -31.37940 -30.94608 -29.97518 -29.04419 -26.05538 -24.36490 -22.54200 -21.79361 -20.57371 -19.22806 -18.18953 -17.99407 -17.55113 -16.70170 -15.93369 -15.84713 -15.35204 -15.27433 -14.54631 -14.37657 -13.92631 -13.60362 -13.39178 -13.35952 -13.08445 -12.71054 -12.34348 -12.09103 -11.59216 -11.51339 -11.47622 -11.20069 -11.06381 -10.78787 -10.58399 -10.42813 -10.26852 -9.88546 -9.56122 -8.64981 -8.48407 -8.02843 -7.09384 -6.46356 -3.87871 1.71482 1.87100 2.19298 2.71974 3.14248 3.24034 3.29809 3.43066 3.80338 4.13682 4.21953 4.86728 4.97472 5.03502 5.19820 5.20498 5.24967 5.33946 5.48206 5.58106 5.69084 5.71955 5.89025 5.98620 6.15788 6.26221 6.43510 6.50730 6.72036 6.88415 7.08441 7.32095 7.50502 7.66230 7.88710 7.99676 8.54389 9.12197 9.46847 9.97423 10.70514 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.004980 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.838112 B = 5621.004953 C = 6648.400594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.559 5.559 10 C 0.417 3.583 11 O -0.581 6.581 12 C 0.113 3.887 13 N -0.583 5.583 14 C 0.140 3.860 15 C 0.450 3.550 16 O -0.503 6.503 17 O -0.520 6.520 18 C 0.237 3.763 19 C -0.200 4.200 20 C -0.077 4.077 21 C -0.184 4.184 22 C -0.073 4.073 23 C -0.181 4.181 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.406 0.594 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 -14.749 -0.554 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.201 3.799 11 O -0.465 6.465 12 C -0.014 4.014 13 N -0.291 5.291 14 C 0.013 3.987 15 C 0.290 3.710 16 O -0.389 6.389 17 O -0.332 6.332 18 C 0.136 3.864 19 C -0.222 4.222 20 C -0.095 4.095 21 C -0.204 4.204 22 C -0.092 4.092 23 C -0.203 4.203 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.264 0.736 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.714 -14.269 -0.401 14.530 hybrid contribution -0.724 0.469 -0.255 0.900 sum 1.990 -13.800 -0.656 13.958 Atomic orbital electron populations 1.69611 1.05949 1.28284 1.50190 1.25272 0.95628 0.99758 0.97139 0.85858 0.79274 0.80760 0.78408 1.20382 1.20873 1.19392 1.19696 0.93360 0.82160 1.47764 0.87920 1.41887 1.09233 1.04604 1.63869 1.20459 0.88888 0.85215 0.85339 1.90541 1.13567 1.86994 1.55441 1.21271 0.90756 0.85348 1.03998 1.45484 1.48411 1.33760 1.01495 1.20741 0.96279 0.93511 0.88164 1.24843 0.85567 0.82759 0.77847 1.90721 1.29597 1.64896 1.53696 1.84560 1.57590 1.49538 1.41503 1.17704 0.91828 0.91453 0.85387 1.20543 1.02925 1.00338 0.98407 1.20765 0.98249 0.98499 0.92027 1.20816 1.02140 0.99934 0.97546 1.20858 0.95902 0.95310 0.97123 1.20713 1.05155 1.03369 0.91059 0.91778 0.77414 0.89375 0.88716 0.86080 0.86375 0.73577 0.86825 0.86602 0.86842 0.86348 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.63 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.42 9.43 7.85 -10.99 -0.09 9.35 16 11 O -0.58 -15.19 16.01 5.54 0.09 -15.10 16 12 C 0.11 1.99 5.64 -5.19 -0.03 1.96 16 13 N -0.58 -9.74 1.58 -174.49 -0.28 -10.01 16 14 C 0.14 1.91 5.75 -5.19 -0.03 1.88 16 15 C 0.45 5.84 8.40 36.01 0.30 6.14 16 16 O -0.50 -8.14 17.19 -18.75 -0.32 -8.46 16 17 O -0.52 -5.07 13.42 -39.26 -0.53 -5.60 16 18 C 0.24 4.05 6.55 -83.78 -0.55 3.50 16 19 C -0.20 -3.01 9.21 -39.38 -0.36 -3.37 16 20 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 21 C -0.18 -2.52 10.04 -39.55 -0.40 -2.92 16 22 C -0.07 -1.09 10.04 -39.61 -0.40 -1.49 16 23 C -0.18 -3.08 9.21 -39.38 -0.36 -3.45 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 26 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 27 H 0.09 1.56 6.20 -51.93 -0.32 1.24 16 28 H 0.12 1.59 8.07 -51.93 -0.42 1.17 16 29 H 0.12 1.42 6.20 -51.93 -0.32 1.10 16 30 H 0.41 2.28 9.10 45.56 0.41 2.70 16 31 H 0.11 1.48 6.14 -52.49 -0.32 1.16 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 2.11 6.14 -52.49 -0.32 1.78 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -33.66 312.78 -6.04 -39.70 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -2.81 Total: 13.71 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.55 Total: 2.38 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.39 Total: -47.06 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.76 Total: -29.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.66 -6.04 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037595507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.189 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds