Wall clock time and date at job start Mon Mar 30 2020 23:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86791 * 120.00392 * 2 1 4 4 H 1.48503 * 109.47420 * 269.99869 * 3 2 1 5 5 H 1.48508 * 109.47287 * 30.00091 * 3 2 1 6 6 H 1.48505 * 109.47273 * 149.99964 * 3 2 1 7 7 C 1.38954 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00041 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99978 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00266 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47060 * 179.97438 * 12 10 9 14 14 C 1.46500 * 119.99810 * 270.00183 * 13 12 10 15 15 C 1.50702 * 109.46680 * 270.00045 * 14 13 12 16 16 O 1.20823 * 120.00250 * 0.02562 * 15 14 13 17 17 O 1.34231 * 119.99512 * 180.02562 * 15 14 13 18 18 C 1.39672 * 119.99644 * 90.00051 * 13 12 10 19 19 C 1.38918 * 120.07035 * 179.97438 * 18 13 12 20 20 C 1.38103 * 119.92232 * 180.26003 * 19 18 13 21 21 C 1.38291 * 120.07426 * 359.43747 * 20 19 18 22 22 C 1.38281 * 120.14889 * 0.56232 * 21 20 19 23 23 C 1.38103 * 120.07737 * 359.72142 * 22 21 20 24 24 H 0.96997 * 119.99354 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00585 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47052 * 60.00025 * 12 10 9 27 27 H 1.08993 * 109.47171 * 299.99763 * 12 10 9 28 28 H 1.08998 * 109.47261 * 29.99830 * 14 13 12 29 29 H 1.08996 * 109.46806 * 150.00562 * 14 13 12 30 30 H 0.96700 * 116.99567 * 180.02562 * 17 15 14 31 31 H 1.08002 * 120.03585 * 359.97438 * 19 18 13 32 32 H 1.08004 * 119.95970 * 179.72372 * 20 19 18 33 33 H 1.07994 * 119.92283 * 180.28458 * 21 20 19 34 34 H 1.07998 * 119.96595 * 179.74375 * 22 21 20 35 35 H 1.08001 * 120.04036 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9766 0.0027 14 6 2.6715 -6.5339 -1.2658 15 6 1.7546 -7.6482 -1.7003 16 8 0.8012 -7.9459 -1.0205 17 8 1.9973 -8.3099 -2.8427 18 6 2.6492 -6.5068 1.2125 19 6 3.5515 -7.5631 1.2148 20 6 3.9940 -8.0885 2.4129 21 6 3.5489 -7.5568 3.6093 22 6 2.6508 -6.5053 3.6106 23 6 2.1997 -5.9789 2.4162 24 1 -0.4849 0.8401 -0.0004 25 1 0.3533 -2.3907 0.0005 26 1 0.6172 -4.9213 -0.8880 27 1 0.6165 -4.9201 0.8919 28 1 2.6792 -5.7526 -2.0258 29 1 3.6808 -6.9239 -1.1353 30 1 1.3812 -9.0165 -3.0800 31 1 3.9029 -7.9759 0.2807 32 1 4.6921 -8.9127 2.4153 33 1 3.9001 -7.9666 4.5448 34 1 2.3019 -6.0951 4.5468 35 1 1.4979 -5.1580 2.4180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037595507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:00 Heat of formation + Delta-G solvation = -105.738716 kcal Electronic energy + Delta-G solvation = -21328.572364 eV Core-core repulsion = 17905.109842 eV Total energy + Delta-G solvation = -3423.462522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53526 -40.48978 -39.65664 -37.33827 -36.67526 -35.83602 -33.31881 -32.15348 -31.12100 -30.36091 -27.56357 -26.05354 -23.63350 -22.95348 -21.84258 -20.85096 -19.91252 -19.17709 -18.76172 -18.01540 -17.42345 -16.95159 -16.61944 -16.53092 -16.30478 -15.76722 -15.61871 -14.93399 -14.72120 -14.62723 -14.32373 -14.05869 -13.66909 -13.51360 -13.13027 -13.04564 -12.73587 -12.49726 -12.42891 -12.27583 -12.13416 -11.91139 -11.71371 -11.51262 -11.11629 -10.28386 -10.02566 -9.78708 -8.49768 -8.29776 -5.96105 0.57350 0.73277 1.18452 1.37083 1.41692 1.53440 1.64783 2.00394 2.29564 2.37872 3.03394 3.18748 3.27860 3.81865 3.91303 4.10620 4.22965 4.26996 4.33086 4.37283 4.43053 4.47007 4.64859 4.71374 4.83542 5.13944 5.33537 5.40572 5.60052 5.61951 5.76107 5.92362 5.99916 6.14723 6.48034 6.58364 7.01504 7.11340 7.53429 8.07810 8.69729 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.004980 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.838112 B = 5621.004953 C = 6648.400594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.570 5.570 10 C 0.423 3.577 11 O -0.617 6.617 12 C 0.126 3.874 13 N -0.592 5.592 14 C 0.133 3.867 15 C 0.466 3.534 16 O -0.537 6.537 17 O -0.509 6.509 18 C 0.211 3.789 19 C -0.209 4.209 20 C -0.077 4.077 21 C -0.185 4.185 22 C -0.083 4.083 23 C -0.213 4.213 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.427 0.573 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -15.919 -0.631 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.209 3.791 11 O -0.503 6.503 12 C -0.001 4.001 13 N -0.301 5.301 14 C 0.007 3.993 15 C 0.307 3.693 16 O -0.427 6.427 17 O -0.322 6.322 18 C 0.111 3.889 19 C -0.231 4.231 20 C -0.095 4.095 21 C -0.204 4.204 22 C -0.101 4.101 23 C -0.235 4.235 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.289 0.711 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.335 -15.480 -0.505 15.843 hybrid contribution -0.863 0.710 -0.236 1.142 sum 2.472 -14.770 -0.741 14.994 Atomic orbital electron populations 1.69673 1.06830 1.29318 1.50164 1.26016 0.96489 1.02351 0.96224 0.84948 0.77861 0.76985 0.78672 1.19532 1.19661 1.19884 1.19637 0.92645 0.83906 1.49900 0.90311 1.41942 1.09337 1.04689 1.64720 1.21376 0.88654 0.86311 0.82801 1.90504 1.15489 1.87826 1.56500 1.21090 0.90588 0.83057 1.05378 1.45545 1.48557 1.33452 1.02533 1.20896 0.97236 0.94012 0.87151 1.24458 0.84509 0.82342 0.78019 1.90719 1.30967 1.66016 1.54977 1.84499 1.58000 1.49941 1.39734 1.18018 0.92909 0.92544 0.85408 1.20863 1.02436 0.99841 0.99969 1.21222 0.98027 0.98854 0.91384 1.21219 1.01097 0.99069 0.99027 1.21157 0.96126 0.95750 0.97088 1.20836 1.06264 1.04018 0.92379 0.91284 0.77005 0.87257 0.87843 0.85871 0.84779 0.71122 0.85109 0.83274 0.83896 0.84722 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -28.71 5.29 -306.97 -1.62 -30.33 16 10 C 0.42 19.61 7.85 87.66 0.69 20.30 16 11 O -0.62 -33.16 16.01 -3.10 -0.05 -33.21 16 12 C 0.13 4.49 5.64 85.63 0.48 4.97 16 13 N -0.59 -19.66 1.58 -705.96 -1.12 -20.78 16 14 C 0.13 3.49 5.75 85.63 0.49 3.98 16 15 C 0.47 11.34 8.40 71.24 0.60 11.94 16 16 O -0.54 -16.82 17.19 21.97 0.38 -16.44 16 17 O -0.51 -8.66 13.42 -51.43 -0.69 -9.35 16 18 C 0.21 7.17 6.55 38.22 0.25 7.42 16 19 C -0.21 -5.97 9.21 22.40 0.21 -5.77 16 20 C -0.08 -1.88 10.04 22.25 0.22 -1.66 16 21 C -0.18 -4.61 10.04 22.29 0.22 -4.39 16 22 C -0.08 -2.40 10.04 22.25 0.22 -2.18 16 23 C -0.21 -7.36 9.21 22.40 0.21 -7.15 16 24 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 26 H 0.11 3.40 8.07 -2.39 -0.02 3.38 16 27 H 0.10 3.50 6.20 -2.39 -0.01 3.49 16 28 H 0.12 3.16 8.07 -2.39 -0.02 3.14 16 29 H 0.13 3.03 6.20 -2.39 -0.01 3.02 16 30 H 0.43 3.63 9.10 -74.06 -0.67 2.96 16 31 H 0.13 3.13 6.14 -2.91 -0.02 3.12 16 32 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.11 3.87 6.14 -2.91 -0.02 3.85 16 Total: -1.00 -72.99 312.78 3.83 -69.16 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.25 Total: 35.57 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 4.88 Total: 9.65 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.46 Total: -99.97 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -0.36 Total: -58.99 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.99 3.83 -69.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037595507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.582 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds