Wall clock time and date at job start Tue Mar 31 2020 00:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 120.07414 * 2 1 4 4 C 1.38338 * 120.14249 * 180.23836 * 3 2 1 5 5 C 1.38382 * 120.29008 * 359.48076 * 4 3 2 6 6 N 1.48014 * 119.92294 * 180.28150 * 5 4 3 7 7 O 1.21806 * 120.00494 * 0.02562 * 6 5 4 8 8 O 1.21804 * 120.00387 * 180.02562 * 6 5 4 9 9 C 1.37928 * 120.14687 * 0.26020 * 5 4 3 10 10 C 1.39556 * 120.07369 * 179.72372 * 2 1 3 11 11 C 1.47846 * 120.14044 * 359.97438 * 10 2 1 12 12 O 1.21548 * 120.00343 * 310.13599 * 11 10 2 13 13 N 1.34777 * 119.99691 * 130.14439 * 11 10 2 14 14 C 1.46497 * 120.00130 * 4.43449 * 13 11 10 15 15 C 1.46503 * 120.00101 * 184.42924 * 13 11 10 16 16 C 1.50700 * 109.46936 * 89.99999 * 15 13 11 17 17 H 1.08005 * 119.99943 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00102 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46948 * 60.00374 * 20 18 16 22 22 H 1.48503 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47366 * 299.99931 * 20 18 16 24 24 H 1.09007 * 109.46919 * 264.81460 * 1 2 3 25 25 H 1.09002 * 109.46957 * 24.81303 * 1 2 3 26 26 H 1.08995 * 109.47454 * 144.81971 * 1 2 3 27 27 H 1.07991 * 119.92656 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.84961 * 179.76351 * 4 3 2 29 29 H 1.08006 * 120.07361 * 179.97438 * 9 5 4 30 30 H 1.09001 * 109.47644 * 93.08470 * 14 13 11 31 31 H 1.09001 * 109.46935 * 213.08145 * 14 13 11 32 32 H 1.08996 * 109.46975 * 333.07709 * 14 13 11 33 33 H 1.08998 * 109.47209 * 210.00165 * 15 13 11 34 34 H 1.09003 * 109.47280 * 330.00499 * 15 13 11 35 35 H 0.97000 * 120.00109 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 -0.0050 5 6 4.2813 0.0017 0.0008 6 7 5.7613 0.0130 0.0018 7 8 6.3624 1.0724 -0.0021 8 8 6.3785 -1.0371 0.0064 9 6 3.6022 -1.1988 0.0062 10 6 2.2063 -1.2077 0.0058 11 6 1.4719 -2.4908 0.0126 12 8 0.5814 -2.6772 0.8186 13 7 1.7899 -3.4539 -0.8750 14 6 2.9257 -3.2686 -1.7815 15 6 0.9999 -4.6863 -0.9331 16 6 -0.1333 -4.5108 -1.9110 17 1 -0.2532 -3.5747 -2.4363 18 6 -1.0175 -5.5448 -2.1343 19 7 -0.8724 -6.6841 -1.4936 20 14 -2.4225 -5.3270 -3.3460 21 1 -1.8729 -5.0279 -4.6927 22 1 -3.2233 -6.5763 -3.4050 23 1 -3.2879 -4.2042 -2.9038 24 1 -0.3633 -0.0929 1.0235 25 1 -0.3633 0.9328 -0.4313 26 1 -0.3634 -0.8399 -0.5920 27 1 1.6585 2.1293 -0.0004 28 1 4.1182 2.1331 -0.0088 29 1 4.1493 -2.1301 0.0104 30 1 3.8205 -3.7042 -1.3368 31 1 2.7162 -3.7599 -2.7316 32 1 3.0855 -2.2037 -1.9506 33 1 1.6354 -5.5103 -1.2574 34 1 0.5961 -4.9060 0.0552 35 1 -1.4943 -7.4117 -1.6510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041031432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:44 Heat of formation + Delta-G solvation = -11.344284 kcal Electronic energy + Delta-G solvation = -21425.852609 eV Core-core repulsion = 18006.483337 eV Total energy + Delta-G solvation = -3419.369272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 6.52 seconds Orbital eigenvalues (eV) -42.26746 -40.41723 -38.29969 -36.63497 -35.20479 -33.42989 -32.89080 -31.65998 -28.80733 -27.83990 -26.29960 -25.15318 -24.25037 -22.84145 -21.71186 -20.09117 -18.77805 -18.19242 -17.60934 -16.68253 -16.56687 -16.09452 -15.88030 -15.39592 -14.70261 -14.39578 -14.18102 -13.81203 -13.20737 -12.77016 -12.57440 -12.44486 -12.24921 -12.12427 -11.96644 -11.79500 -11.58256 -11.33238 -11.25775 -11.21507 -11.02918 -10.69868 -10.28970 -9.82481 -9.56641 -9.46270 -9.24404 -8.54610 -7.88838 -6.15885 -4.22107 -0.27898 0.56017 1.20547 1.29016 2.80198 3.23648 3.24991 3.29106 3.33503 3.63966 4.17227 4.27358 4.34656 4.42387 4.57278 4.75667 4.94454 5.18484 5.24814 5.37112 5.42120 5.47610 5.57639 5.62571 5.75278 5.85577 6.03011 6.06848 6.20704 6.35015 6.85637 7.25055 7.32214 7.56214 7.78398 8.07578 8.11566 8.63646 8.83625 9.43345 10.92237 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.004654 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.388015 B = 6015.454177 C = 6610.786432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.016 3.984 3 C -0.126 4.126 4 C -0.042 4.042 5 C -0.061 4.061 6 N 0.033 4.967 7 O -0.166 6.166 8 O -0.160 6.160 9 C -0.024 4.024 10 C -0.115 4.115 11 C 0.549 3.451 12 O -0.523 6.523 13 N -0.588 5.588 14 C 0.074 3.926 15 C 0.244 3.756 16 C -0.533 4.533 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 14.876 1.054 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.015 3.985 3 C -0.145 4.145 4 C -0.061 4.061 5 C -0.144 4.144 6 N 0.552 4.448 7 O -0.381 6.381 8 O -0.377 6.377 9 C -0.044 4.044 10 C -0.119 4.119 11 C 0.333 3.667 12 O -0.400 6.400 13 N -0.319 5.319 14 C -0.070 4.070 15 C 0.126 3.874 16 C -0.572 4.572 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.201 1.201 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.037 14.522 1.482 15.796 hybrid contribution -0.211 0.035 -0.782 0.811 sum 5.825 14.557 0.700 15.695 Atomic orbital electron populations 1.21047 0.88710 1.03884 1.04656 1.20501 0.97975 0.91243 0.88767 1.21061 0.92351 0.98612 1.02430 1.21115 0.94607 0.97024 0.93379 1.20920 0.79256 0.96778 1.17427 1.43577 1.03549 1.00417 0.97285 1.94515 1.69718 1.20121 1.53761 1.94559 1.68373 1.21296 1.53424 1.21262 0.93656 0.97647 0.91814 1.20228 0.92117 0.95785 1.03781 1.17830 0.83581 0.82756 0.82487 1.90795 1.31045 1.79713 1.38475 1.48162 1.30438 1.19533 1.33743 1.21894 0.88813 1.00900 0.95411 1.19414 0.90031 0.78970 0.99034 1.21332 1.11777 0.99678 1.24390 0.92472 1.24925 0.97724 0.94997 0.96240 1.69914 1.37628 1.03787 1.41657 0.86545 0.81997 0.77590 0.81216 1.20195 1.21049 1.20140 0.88835 0.90813 0.89406 0.83075 0.82807 0.82347 0.92847 0.90161 0.92512 0.94464 0.93359 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.89 36.01 0.32 -1.24 16 2 C 0.02 0.20 5.91 -104.22 -0.62 -0.41 16 3 C -0.13 -1.18 9.67 -39.64 -0.38 -1.56 16 4 C -0.04 -0.42 9.55 -39.49 -0.38 -0.80 16 5 C -0.06 -0.76 6.84 -80.01 -0.55 -1.31 16 6 N 0.03 0.46 4.45 33.93 0.15 0.61 16 7 O -0.17 -2.31 18.44 -29.46 -0.54 -2.86 16 8 O -0.16 -2.39 18.44 -29.46 -0.54 -2.93 16 9 C -0.02 -0.32 7.14 -39.19 -0.28 -0.60 16 10 C -0.11 -1.72 4.86 -104.97 -0.51 -2.23 16 11 C 0.55 10.74 6.31 -12.33 -0.08 10.66 16 12 O -0.52 -12.11 15.41 5.32 0.08 -12.03 16 13 N -0.59 -11.85 2.86 -184.08 -0.53 -12.38 16 14 C 0.07 1.15 9.11 59.85 0.55 1.69 16 15 C 0.24 6.07 5.21 -5.19 -0.03 6.05 16 16 C -0.53 -14.34 9.39 -34.44 -0.32 -14.67 16 17 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 26 H 0.09 1.37 7.09 -51.93 -0.37 1.00 16 27 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 28 H 0.15 1.19 7.60 -52.49 -0.40 0.79 16 29 H 0.16 2.08 6.20 -52.48 -0.33 1.75 16 30 H 0.05 0.72 7.59 -51.93 -0.39 0.33 16 31 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.06 0.77 5.71 -51.93 -0.30 0.48 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -31.33 310.18 -7.18 -38.50 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.81 Total: -1.90 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.37 Total: -2.77 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.36 Total: -36.59 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.00 Total: -17.82 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.33 -7.18 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041031432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.158 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.52 seconds