Wall clock time and date at job start Tue Mar 31 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 120.07414 * 2 1 4 4 C 1.38338 * 120.14249 * 180.23836 * 3 2 1 5 5 C 1.38382 * 120.29008 * 359.48076 * 4 3 2 6 6 N 1.48014 * 119.92294 * 180.28150 * 5 4 3 7 7 O 1.21806 * 120.00494 * 0.02562 * 6 5 4 8 8 O 1.21804 * 120.00387 * 180.02562 * 6 5 4 9 9 C 1.37928 * 120.14687 * 0.26020 * 5 4 3 10 10 C 1.39556 * 120.07369 * 179.72372 * 2 1 3 11 11 C 1.47846 * 120.14044 * 359.97438 * 10 2 1 12 12 O 1.21548 * 120.00343 * 310.13599 * 11 10 2 13 13 N 1.34777 * 119.99691 * 130.14439 * 11 10 2 14 14 C 1.46497 * 120.00130 * 4.43449 * 13 11 10 15 15 C 1.46503 * 120.00101 * 184.42924 * 13 11 10 16 16 C 1.50700 * 109.46936 * 89.99999 * 15 13 11 17 17 H 1.08005 * 119.99943 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00102 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46948 * 60.00374 * 20 18 16 22 22 H 1.48503 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47366 * 299.99931 * 20 18 16 24 24 H 1.09007 * 109.46919 * 264.81460 * 1 2 3 25 25 H 1.09002 * 109.46957 * 24.81303 * 1 2 3 26 26 H 1.08995 * 109.47454 * 144.81971 * 1 2 3 27 27 H 1.07991 * 119.92656 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.84961 * 179.76351 * 4 3 2 29 29 H 1.08006 * 120.07361 * 179.97438 * 9 5 4 30 30 H 1.09001 * 109.47644 * 93.08470 * 14 13 11 31 31 H 1.09001 * 109.46935 * 213.08145 * 14 13 11 32 32 H 1.08996 * 109.46975 * 333.07709 * 14 13 11 33 33 H 1.08998 * 109.47209 * 210.00165 * 15 13 11 34 34 H 1.09003 * 109.47280 * 330.00499 * 15 13 11 35 35 H 0.97000 * 120.00109 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 -0.0050 5 6 4.2813 0.0017 0.0008 6 7 5.7613 0.0130 0.0018 7 8 6.3624 1.0724 -0.0021 8 8 6.3785 -1.0371 0.0064 9 6 3.6022 -1.1988 0.0062 10 6 2.2063 -1.2077 0.0058 11 6 1.4719 -2.4908 0.0126 12 8 0.5814 -2.6772 0.8186 13 7 1.7899 -3.4539 -0.8750 14 6 2.9257 -3.2686 -1.7815 15 6 0.9999 -4.6863 -0.9331 16 6 -0.1333 -4.5108 -1.9110 17 1 -0.2532 -3.5747 -2.4363 18 6 -1.0175 -5.5448 -2.1343 19 7 -0.8724 -6.6841 -1.4936 20 14 -2.4225 -5.3270 -3.3460 21 1 -1.8729 -5.0279 -4.6927 22 1 -3.2233 -6.5763 -3.4050 23 1 -3.2879 -4.2042 -2.9038 24 1 -0.3633 -0.0929 1.0235 25 1 -0.3633 0.9328 -0.4313 26 1 -0.3634 -0.8399 -0.5920 27 1 1.6585 2.1293 -0.0004 28 1 4.1182 2.1331 -0.0088 29 1 4.1493 -2.1301 0.0104 30 1 3.8205 -3.7042 -1.3368 31 1 2.7162 -3.7599 -2.7316 32 1 3.0855 -2.2037 -1.9506 33 1 1.6354 -5.5103 -1.2574 34 1 0.5961 -4.9060 0.0552 35 1 -1.4943 -7.4117 -1.6510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041031432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:42 Heat of formation + Delta-G solvation = -29.954578 kcal Electronic energy + Delta-G solvation = -21426.659612 eV Core-core repulsion = 18006.483337 eV Total energy + Delta-G solvation = -3420.176275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -43.31092 -41.65136 -39.62448 -37.70329 -36.85691 -34.86386 -34.43124 -32.83750 -30.00844 -29.48297 -27.74456 -26.28916 -25.70587 -24.22490 -22.84010 -21.33619 -19.82201 -19.52922 -18.73916 -18.64850 -17.93661 -17.36271 -16.95611 -16.87056 -16.27408 -15.86826 -15.20112 -14.93543 -14.70413 -14.21398 -14.03629 -13.67054 -13.50043 -13.39743 -13.18351 -13.08524 -12.91506 -12.84127 -12.64513 -12.58008 -12.30841 -12.30725 -12.23508 -11.79156 -10.98247 -10.67320 -10.43132 -10.41599 -9.60483 -8.25828 -6.41255 -1.29686 -0.42523 0.19775 0.28062 1.36769 1.40160 1.47429 1.55325 2.00743 2.27382 2.37899 3.04241 3.13948 3.32097 3.44902 3.63103 3.73517 3.97501 4.15235 4.36047 4.45252 4.50772 4.57045 4.64046 4.66513 4.77082 4.89349 4.98684 5.11395 5.15073 5.20226 5.39320 5.44330 5.71911 5.98689 6.46665 6.49782 6.66491 7.10173 7.31154 8.81720 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.004654 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.388015 B = 6015.454177 C = 6610.786432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.013 3.987 3 C -0.100 4.100 4 C -0.022 4.022 5 C -0.067 4.067 6 N 0.034 4.966 7 O -0.147 6.147 8 O -0.201 6.201 9 C -0.025 4.025 10 C -0.136 4.136 11 C 0.546 3.454 12 O -0.572 6.572 13 N -0.597 5.597 14 C 0.073 3.927 15 C 0.258 3.742 16 C -0.546 4.546 17 H 0.056 0.944 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.273 1.273 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.046 0.954 27 H 0.201 0.799 28 H 0.189 0.811 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.006 0.994 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 18.531 -0.067 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.012 3.988 3 C -0.118 4.118 4 C -0.041 4.041 5 C -0.151 4.151 6 N 0.550 4.450 7 O -0.368 6.368 8 O -0.408 6.408 9 C -0.044 4.044 10 C -0.140 4.140 11 C 0.334 3.666 12 O -0.453 6.453 13 N -0.327 5.327 14 C -0.069 4.069 15 C 0.137 3.863 16 C -0.584 4.584 17 H 0.075 0.925 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.198 1.198 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.206 0.794 29 H 0.170 0.830 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.280 18.112 0.342 19.173 hybrid contribution -0.229 -0.969 -0.380 1.066 sum 6.050 17.143 -0.037 18.179 Atomic orbital electron populations 1.21029 0.88868 1.04316 1.03862 1.20696 0.98072 0.91503 0.88539 1.21495 0.91974 0.98841 0.99505 1.21604 0.94864 0.97136 0.90463 1.21003 0.78366 0.97380 1.18317 1.43749 1.04095 1.00192 0.96931 1.94486 1.70126 1.19925 1.52312 1.94581 1.68958 1.21587 1.55652 1.21073 0.92903 0.98304 0.92145 1.19754 0.92497 0.94126 1.07604 1.18502 0.83072 0.83934 0.81124 1.90748 1.33436 1.80873 1.40204 1.48121 1.31174 1.18453 1.34987 1.22082 0.87750 1.02658 0.94412 1.18879 0.90131 0.81030 0.96212 1.21603 1.12544 0.99668 1.24577 0.92549 1.25849 1.00382 0.94580 0.98068 1.70042 1.38779 1.04644 1.43165 0.85460 0.78523 0.77614 0.79200 1.18647 1.20491 1.19828 0.89508 0.86532 0.93545 0.78186 0.79419 0.82950 0.90895 0.90581 0.90131 0.95500 0.97634 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.89 71.24 0.63 -2.25 16 2 C 0.01 0.29 5.91 -19.61 -0.12 0.18 16 3 C -0.10 -1.34 9.67 22.23 0.21 -1.12 16 4 C -0.02 -0.32 9.55 22.33 0.21 -0.11 16 5 C -0.07 -1.50 6.84 36.34 0.25 -1.25 16 6 N 0.03 0.87 4.45 -46.56 -0.21 0.67 16 7 O -0.15 -3.60 18.44 18.88 0.35 -3.26 16 8 O -0.20 -5.88 18.44 18.88 0.35 -5.53 16 9 C -0.02 -0.63 7.14 22.52 0.16 -0.47 16 10 C -0.14 -4.01 4.86 -20.09 -0.10 -4.11 16 11 C 0.55 22.34 6.31 86.79 0.55 22.89 16 12 O -0.57 -28.24 15.41 -3.87 -0.06 -28.30 16 13 N -0.60 -25.22 2.86 -854.58 -2.44 -27.66 16 14 C 0.07 2.30 9.11 127.77 1.16 3.47 16 15 C 0.26 13.66 5.21 85.63 0.45 14.11 16 16 C -0.55 -30.41 9.39 25.60 0.24 -30.17 16 17 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 20 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.12 1.62 8.05 -2.39 -0.02 1.60 16 26 H 0.05 1.47 7.09 -2.39 -0.02 1.45 16 27 H 0.20 0.82 8.06 -2.92 -0.02 0.80 16 28 H 0.19 1.63 7.60 -2.91 -0.02 1.60 16 29 H 0.15 4.03 6.20 -2.91 -0.02 4.01 16 30 H 0.07 1.99 7.59 -2.39 -0.02 1.97 16 31 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 32 H 0.08 2.14 5.71 -2.39 -0.01 2.13 16 33 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 34 H 0.01 0.34 7.36 -2.39 -0.02 0.32 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -72.76 310.18 5.54 -67.22 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.12 Total: 3.93 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 4.12 Total: 2.22 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.36 Total: -81.63 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: 0.64 Total: -37.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.76 5.54 -67.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041031432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.266 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds