Wall clock time and date at job start Tue Mar 31 2020 00:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38666 * 120.11491 * 2 1 4 4 N 1.39707 * 120.00454 * 0.02562 * 3 2 1 5 5 C 1.38993 * 119.99236 * 180.27558 * 3 2 1 6 6 C 1.38255 * 120.23392 * 359.74779 * 5 3 2 7 7 C 1.37974 * 120.22711 * 0.02562 * 6 5 3 8 8 C 1.39511 * 120.11244 * 179.78751 * 2 1 3 9 9 C 1.47744 * 120.11715 * 0.02562 * 8 2 1 10 10 O 1.21465 * 119.99663 * 353.56176 * 9 8 2 11 11 O 1.34708 * 119.99811 * 173.56536 * 9 8 2 12 12 C 1.45199 * 116.99751 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47476 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99574 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00571 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00272 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00208 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00371 * 179.97438 * 16 15 13 19 19 N 1.31421 * 119.99789 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00555 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46762 * 60.00076 * 20 18 16 22 22 H 1.48492 * 109.47418 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46884 * 300.00179 * 20 18 16 24 24 H 1.09003 * 109.47060 * 263.70959 * 1 2 3 25 25 H 1.08996 * 109.47021 * 23.71123 * 1 2 3 26 26 H 1.09000 * 109.47023 * 143.71074 * 1 2 3 27 27 H 0.96994 * 120.00377 * 180.25855 * 4 3 2 28 28 H 0.97009 * 119.99745 * 0.26080 * 4 3 2 29 29 H 1.07995 * 119.88104 * 179.71568 * 5 3 2 30 30 H 1.07996 * 119.88471 * 180.02562 * 6 5 3 31 31 H 1.08004 * 119.99552 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.46986 * 299.99757 * 12 11 9 33 33 H 1.09002 * 109.47478 * 59.99443 * 12 11 9 34 34 H 0.97006 * 120.00042 * 359.97438 * 15 13 12 35 35 H 0.96999 * 119.99879 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5068 2.4108 0.0005 5 6 3.5927 1.1965 -0.0058 6 6 4.2863 0.0005 -0.0063 7 6 3.6035 -1.1984 -0.0016 8 6 2.2070 -1.2068 0.0045 9 6 1.4734 -2.4893 0.0087 10 8 0.2644 -2.4969 0.1262 11 8 2.1453 -3.6499 -0.1178 12 6 1.3598 -4.8711 -0.1047 13 6 2.2749 -6.0587 -0.2570 14 8 3.4715 -5.8923 -0.3654 15 7 1.7639 -7.3056 -0.2718 16 6 2.5965 -8.3860 -0.4098 17 1 3.6618 -8.2379 -0.5071 18 6 2.0697 -9.6718 -0.4245 19 7 0.7733 -9.8521 -0.3066 20 14 3.2041 -11.1439 -0.6133 21 1 4.1757 -11.1671 0.5094 22 1 2.4010 -12.3928 -0.5981 23 1 3.9373 -11.0419 -1.9005 24 1 -0.3633 -0.1126 1.0215 25 1 -0.3633 0.9409 -0.4132 26 1 -0.3633 -0.8283 -0.6082 27 1 1.9934 3.2499 -0.0032 28 1 0.5367 2.4128 0.0047 29 1 4.1327 2.1318 -0.0104 30 1 5.3662 0.0048 -0.0104 31 1 4.1491 -2.1305 -0.0024 32 1 0.8206 -4.9462 0.8396 33 1 0.6473 -4.8537 -0.9295 34 1 0.8070 -7.4388 -0.1840 35 1 0.4055 -10.7496 -0.3172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041098917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:13 Heat of formation + Delta-G solvation = -93.024934 kcal Electronic energy + Delta-G solvation = -20543.796324 eV Core-core repulsion = 17120.885113 eV Total energy + Delta-G solvation = -3422.911211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60319 -39.21753 -38.02264 -36.08011 -34.81642 -33.96736 -32.50790 -31.35412 -29.69135 -28.13789 -26.97935 -24.76937 -23.73473 -21.40785 -20.80814 -19.52873 -18.06546 -18.03376 -17.23366 -16.59880 -16.26466 -15.87814 -15.64372 -15.13420 -14.48883 -14.37959 -14.20395 -13.93012 -13.60276 -13.47727 -12.93537 -12.48710 -12.38069 -12.13194 -12.03082 -11.83222 -11.59428 -11.23198 -11.09163 -10.82539 -10.47099 -10.34852 -10.27647 -9.97393 -9.56916 -8.96676 -8.48683 -8.05538 -7.68841 -6.47438 -3.89388 0.71507 1.42997 2.67973 2.74690 3.17496 3.24446 3.29319 3.64079 3.75425 3.79047 4.14014 4.60343 4.71035 4.86944 4.98212 5.10322 5.17781 5.31789 5.46420 5.53595 5.63562 5.69460 5.72150 5.74332 6.04842 6.09590 6.14032 6.39650 6.41309 6.61262 6.76484 7.21748 7.49097 7.50043 7.90401 8.00870 8.51590 9.09654 9.42259 9.92437 10.69824 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.003170 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.436950 B = 8831.551235 C = 9458.877990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C 0.198 3.802 4 N -0.879 5.879 5 C -0.163 4.163 6 C -0.092 4.092 7 C -0.110 4.110 8 C -0.079 4.079 9 C 0.503 3.497 10 O -0.507 6.507 11 O -0.320 6.320 12 C 0.061 3.939 13 C 0.439 3.561 14 O -0.575 6.575 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.397 0.603 28 H 0.398 0.602 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.395 0.605 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 21.672 0.874 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C 0.094 3.906 4 N -0.421 5.421 5 C -0.186 4.186 6 C -0.111 4.111 7 C -0.130 4.130 8 C -0.081 4.081 9 C 0.349 3.651 10 O -0.398 6.398 11 O -0.234 6.234 12 C -0.016 4.016 13 C 0.224 3.776 14 O -0.459 6.459 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.539 5.539 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.225 0.775 28 H 0.229 0.771 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.071 21.507 0.833 21.523 hybrid contribution -0.435 -0.557 -0.002 0.707 sum -0.364 20.949 0.831 20.969 Atomic orbital electron populations 1.20915 0.90173 1.02440 1.03416 1.19399 0.96458 0.90137 1.04267 1.17351 0.91126 0.85981 0.96141 1.42488 1.09111 1.04644 1.85824 1.20798 0.91837 0.98905 1.07090 1.20880 1.00054 0.91392 0.98765 1.21404 0.92652 0.99456 0.99465 1.18708 0.93549 0.89301 1.06514 1.21257 0.85854 0.84878 0.73154 1.90756 1.15045 1.87894 1.46104 1.86602 1.40469 1.13897 1.82417 1.22750 0.93639 0.81771 1.03463 1.19319 0.88793 0.83581 0.85905 1.90559 1.15282 1.85116 1.54979 1.41691 1.10359 1.03740 1.63262 1.19678 0.92553 0.83462 1.47448 0.87667 1.25309 0.96415 0.99077 0.96958 1.69611 1.10990 1.23806 1.49469 0.85858 0.79357 0.79462 0.79215 1.19762 1.20893 1.19758 0.90932 0.93053 0.88727 0.77455 0.77134 0.85822 0.85191 0.84012 0.89485 0.89506 0.77156 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 8.43 36.01 0.30 -0.99 16 2 C -0.10 -1.23 5.93 -103.99 -0.62 -1.85 16 3 C 0.20 2.03 6.73 -83.83 -0.56 1.47 16 4 N -0.88 -6.07 8.99 32.39 0.29 -5.77 16 5 C -0.16 -1.56 9.89 -39.30 -0.39 -1.95 16 6 C -0.09 -0.98 10.02 -39.67 -0.40 -1.38 16 7 C -0.11 -1.48 9.61 -39.15 -0.38 -1.85 16 8 C -0.08 -1.16 5.87 -105.01 -0.62 -1.78 16 9 C 0.50 8.65 7.83 34.62 0.27 8.92 16 10 O -0.51 -8.98 13.14 -19.24 -0.25 -9.23 16 11 O -0.32 -6.22 9.02 -47.19 -0.43 -6.64 16 12 C 0.06 1.20 5.95 36.00 0.21 1.41 16 13 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16 14 O -0.58 -16.10 16.08 -14.12 -0.23 -16.33 16 15 N -0.55 -14.12 5.29 -10.97 -0.06 -14.18 16 16 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 17 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.66 5.50 -17.46 -0.10 0.56 16 19 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 20 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.44 6.24 -51.93 -0.32 0.11 16 26 H 0.09 1.28 5.85 -51.93 -0.30 0.97 16 27 H 0.40 1.82 8.84 -40.82 -0.36 1.46 16 28 H 0.40 2.36 6.69 -40.82 -0.27 2.09 16 29 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.14 2.03 7.62 -52.48 -0.40 1.63 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -32.62 308.89 -6.42 -39.04 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.61 Total: 11.52 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.50 Total: 4.66 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.96 Total: -43.48 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.91 Total: -32.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.62 -6.42 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041098917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.984 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds