Wall clock time and date at job start Tue Mar 31 2020 00:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38666 * 120.11491 * 2 1 4 4 N 1.39707 * 120.00454 * 0.02562 * 3 2 1 5 5 C 1.38993 * 119.99236 * 180.27558 * 3 2 1 6 6 C 1.38255 * 120.23392 * 359.74779 * 5 3 2 7 7 C 1.37974 * 120.22711 * 0.02562 * 6 5 3 8 8 C 1.39511 * 120.11244 * 179.78751 * 2 1 3 9 9 C 1.47744 * 120.11715 * 0.02562 * 8 2 1 10 10 O 1.21465 * 119.99663 * 353.56176 * 9 8 2 11 11 O 1.34708 * 119.99811 * 173.56536 * 9 8 2 12 12 C 1.45199 * 116.99751 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47476 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99574 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00571 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00272 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00208 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00371 * 179.97438 * 16 15 13 19 19 N 1.31421 * 119.99789 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00555 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46762 * 60.00076 * 20 18 16 22 22 H 1.48492 * 109.47418 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46884 * 300.00179 * 20 18 16 24 24 H 1.09003 * 109.47060 * 263.70959 * 1 2 3 25 25 H 1.08996 * 109.47021 * 23.71123 * 1 2 3 26 26 H 1.09000 * 109.47023 * 143.71074 * 1 2 3 27 27 H 0.96994 * 120.00377 * 180.25855 * 4 3 2 28 28 H 0.97009 * 119.99745 * 0.26080 * 4 3 2 29 29 H 1.07995 * 119.88104 * 179.71568 * 5 3 2 30 30 H 1.07996 * 119.88471 * 180.02562 * 6 5 3 31 31 H 1.08004 * 119.99552 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.46986 * 299.99757 * 12 11 9 33 33 H 1.09002 * 109.47478 * 59.99443 * 12 11 9 34 34 H 0.97006 * 120.00042 * 359.97438 * 15 13 12 35 35 H 0.96999 * 119.99879 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5068 2.4108 0.0005 5 6 3.5927 1.1965 -0.0058 6 6 4.2863 0.0005 -0.0063 7 6 3.6035 -1.1984 -0.0016 8 6 2.2070 -1.2068 0.0045 9 6 1.4734 -2.4893 0.0087 10 8 0.2644 -2.4969 0.1262 11 8 2.1453 -3.6499 -0.1178 12 6 1.3598 -4.8711 -0.1047 13 6 2.2749 -6.0587 -0.2570 14 8 3.4715 -5.8923 -0.3654 15 7 1.7639 -7.3056 -0.2718 16 6 2.5965 -8.3860 -0.4098 17 1 3.6618 -8.2379 -0.5071 18 6 2.0697 -9.6718 -0.4245 19 7 0.7733 -9.8521 -0.3066 20 14 3.2041 -11.1439 -0.6133 21 1 4.1757 -11.1671 0.5094 22 1 2.4010 -12.3928 -0.5981 23 1 3.9373 -11.0419 -1.9005 24 1 -0.3633 -0.1126 1.0215 25 1 -0.3633 0.9409 -0.4132 26 1 -0.3633 -0.8283 -0.6082 27 1 1.9934 3.2499 -0.0032 28 1 0.5367 2.4128 0.0047 29 1 4.1327 2.1318 -0.0104 30 1 5.3662 0.0048 -0.0104 31 1 4.1491 -2.1305 -0.0024 32 1 0.8206 -4.9462 0.8396 33 1 0.6473 -4.8537 -0.9295 34 1 0.8070 -7.4388 -0.1840 35 1 0.4055 -10.7496 -0.3172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041098917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:13 Heat of formation + Delta-G solvation = -115.051698 kcal Electronic energy + Delta-G solvation = -20544.751476 eV Core-core repulsion = 17120.885113 eV Total energy + Delta-G solvation = -3423.866363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85327 -40.43718 -39.77932 -37.53697 -36.04133 -35.59804 -33.45237 -33.39054 -30.80293 -29.57142 -27.89746 -26.64127 -24.90988 -22.38165 -21.92880 -21.42629 -20.07561 -19.20426 -18.22403 -17.80947 -17.69757 -17.50122 -16.74355 -16.51171 -16.10058 -15.85483 -15.71709 -15.04152 -14.84443 -14.69840 -14.25243 -13.89518 -13.64262 -13.55504 -13.33351 -13.21202 -12.93025 -12.78219 -12.49035 -12.13181 -12.12108 -11.85623 -11.64422 -11.57437 -11.20149 -10.51832 -10.12517 -9.87716 -8.52556 -8.44310 -6.03434 -0.30110 0.54635 1.33036 1.37469 1.44466 1.50708 1.56055 1.86561 2.29722 2.83236 2.94451 3.08450 3.12815 3.61702 3.86507 3.97643 4.10544 4.10834 4.14563 4.21024 4.48855 4.65882 4.75630 4.78279 4.79839 5.12245 5.21435 5.33655 5.36675 5.51312 5.56402 5.83458 5.88443 6.45152 6.53401 6.63595 7.01168 7.02142 7.38909 7.92551 8.64368 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.003170 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.436950 B = 8831.551235 C = 9458.877990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C 0.204 3.796 4 N -0.863 5.863 5 C -0.154 4.154 6 C -0.087 4.087 7 C -0.132 4.132 8 C -0.104 4.104 9 C 0.500 3.500 10 O -0.518 6.518 11 O -0.339 6.339 12 C 0.072 3.928 13 C 0.437 3.563 14 O -0.617 6.617 15 N -0.557 5.557 16 C -0.340 4.340 17 H 0.085 0.915 18 C -0.009 4.009 19 N -0.916 5.916 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.412 0.588 28 H 0.405 0.595 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.400 0.600 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 23.606 0.886 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.119 4.119 3 C 0.098 3.902 4 N -0.405 5.405 5 C -0.176 4.176 6 C -0.106 4.106 7 C -0.152 4.152 8 C -0.106 4.106 9 C 0.347 3.653 10 O -0.409 6.409 11 O -0.254 6.254 12 C -0.005 4.005 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.103 0.897 18 C -0.209 4.209 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.243 0.757 28 H 0.236 0.764 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.234 0.766 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.141 23.486 0.849 23.501 hybrid contribution -0.488 -1.009 -0.001 1.120 sum -0.347 22.477 0.847 22.496 Atomic orbital electron populations 1.20848 0.89740 1.03061 1.02884 1.19546 0.96966 0.90295 1.05046 1.17449 0.91665 0.86221 0.94891 1.42465 1.09587 1.04128 1.84370 1.21202 0.91648 0.99873 1.04909 1.21166 1.01354 0.90653 0.97408 1.21355 0.92350 1.00048 1.01453 1.18746 0.94078 0.88605 1.09161 1.21808 0.86015 0.84881 0.72576 1.90741 1.15407 1.87925 1.46859 1.86605 1.41278 1.14457 1.83090 1.22533 0.92387 0.80393 1.05232 1.20062 0.88887 0.84450 0.84243 1.90522 1.17385 1.85896 1.56539 1.41723 1.10409 1.03952 1.63356 1.19702 0.92179 0.84971 1.49994 0.89736 1.26147 0.97996 1.01119 0.95682 1.69673 1.12137 1.24893 1.48873 0.84905 0.77587 0.76221 0.79141 1.19451 1.19313 1.19444 0.91305 0.90044 0.91154 0.75676 0.76381 0.82154 0.82695 0.86076 0.87549 0.87549 0.76552 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 8.43 71.24 0.60 -1.80 16 2 C -0.11 -2.74 5.93 -19.45 -0.12 -2.86 16 3 C 0.20 3.62 6.73 38.17 0.26 3.88 16 4 N -0.86 -8.71 8.99 -51.45 -0.46 -9.18 16 5 C -0.15 -2.42 9.89 22.45 0.22 -2.20 16 6 C -0.09 -1.70 10.02 22.21 0.22 -1.48 16 7 C -0.13 -3.60 9.61 22.55 0.22 -3.38 16 8 C -0.10 -3.11 5.87 -20.11 -0.12 -3.23 16 9 C 0.50 17.78 7.83 70.34 0.55 18.33 16 10 O -0.52 -18.75 13.14 19.95 0.26 -18.49 16 11 O -0.34 -13.72 9.02 -49.79 -0.45 -14.17 16 12 C 0.07 2.86 5.95 71.23 0.42 3.29 16 13 C 0.44 22.08 7.86 87.66 0.69 22.76 16 14 O -0.62 -36.03 16.08 15.72 0.25 -35.78 16 15 N -0.56 -29.25 5.29 -307.00 -1.62 -30.87 16 16 C -0.34 -19.37 9.68 84.04 0.81 -18.55 16 17 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 18 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 19 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 20 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.22 6.24 -2.39 -0.01 1.20 16 26 H 0.07 1.91 5.85 -2.39 -0.01 1.90 16 27 H 0.41 1.98 8.84 -92.71 -0.82 1.16 16 28 H 0.41 3.36 6.69 -92.70 -0.62 2.74 16 29 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.12 3.72 7.62 -2.91 -0.02 3.70 16 32 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 33 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.40 19.77 7.90 -92.70 -0.73 19.04 16 35 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -72.17 308.89 3.52 -68.65 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.00 Total: 29.53 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 4.23 Total: 14.76 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -1.80 Total: -89.00 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: 0.07 Total: -68.44 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -72.17 3.52 -68.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041098917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.405 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds