Wall clock time and date at job start Tue Mar 31 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37985 * 119.96694 * 2 1 4 4 C 1.38586 * 120.43533 * 180.02562 * 3 2 1 5 5 C 1.37756 * 120.36137 * 0.24864 * 4 3 2 6 6 C 1.39765 * 119.92072 * 359.47820 * 5 4 3 7 7 C 1.47294 * 120.21422 * 180.25035 * 6 5 4 8 8 O 1.21525 * 119.99693 * 185.87878 * 7 6 5 9 9 O 1.34765 * 119.99756 * 5.88302 * 7 6 5 10 10 C 1.45205 * 116.99505 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47039 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99979 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00119 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00400 * 179.97438 * 13 11 10 15 15 H 1.08006 * 119.99481 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00584 * 179.97438 * 14 13 11 17 17 N 1.31415 * 119.99691 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00270 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47155 * 89.99980 * 18 16 14 20 20 H 1.48501 * 109.47452 * 210.00079 * 18 16 14 21 21 H 1.48507 * 109.47111 * 330.00371 * 18 16 14 22 22 C 1.38920 * 119.96125 * 179.97438 * 2 1 3 23 23 N 1.38841 * 120.18125 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47056 * 89.99816 * 1 2 3 25 25 H 1.08999 * 109.46767 * 210.00482 * 1 2 3 26 26 H 1.09001 * 109.46771 * 330.00463 * 1 2 3 27 27 H 1.07999 * 119.78205 * 359.97364 * 3 2 1 28 28 H 1.08004 * 119.81989 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.03808 * 179.74272 * 5 4 3 30 30 H 1.09005 * 109.47020 * 299.99497 * 10 9 7 31 31 H 1.09000 * 109.47178 * 59.99647 * 10 9 7 32 32 H 0.96999 * 120.00157 * 359.97438 * 13 11 10 33 33 H 0.96994 * 119.99689 * 179.97438 * 17 16 14 34 34 H 0.96994 * 119.99799 * 24.92451 * 23 22 2 35 35 H 0.97004 * 119.99696 * 204.92212 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.1954 0.0000 4 6 3.5821 1.2067 -0.0005 5 6 4.2881 0.0238 -0.0062 6 6 3.6052 -1.1956 -0.0005 7 6 4.3537 -2.4643 -0.0009 8 8 3.7602 -3.5198 -0.1038 9 8 5.6965 -2.4544 0.1127 10 6 6.3681 -3.7418 0.1042 11 6 7.8544 -3.5338 0.2406 12 8 8.3036 -2.4111 0.3352 13 7 8.6846 -4.5953 0.2576 14 6 10.0369 -4.4061 0.3812 15 1 10.4368 -3.4064 0.4653 16 6 10.8928 -5.5005 0.3992 17 7 10.4062 -6.7170 0.2973 18 14 12.7351 -5.2427 0.5683 19 1 13.1052 -5.2439 2.0065 20 1 13.4545 -6.3390 -0.1288 21 1 13.1105 -3.9402 -0.0384 22 6 2.2009 -1.2036 0.0005 23 7 1.5097 -2.4077 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6522 2.1283 -0.0004 28 1 4.1115 2.1481 -0.0009 29 1 5.3680 0.0388 -0.0108 30 1 6.0080 -4.3449 0.9378 31 1 6.1572 -4.2555 -0.8337 32 1 8.3255 -5.4932 0.1824 33 1 11.0037 -7.4809 0.3095 34 1 0.6077 -2.4491 -0.3538 35 1 1.9288 -3.2075 0.3549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041099132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:16 Heat of formation + Delta-G solvation = -97.233883 kcal Electronic energy + Delta-G solvation = -20543.897961 eV Core-core repulsion = 17120.804236 eV Total energy + Delta-G solvation = -3423.093725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.61188 -39.17172 -38.01228 -36.14325 -34.58941 -33.97743 -32.80440 -31.36610 -29.63109 -28.17637 -26.88442 -24.84711 -23.76929 -21.45450 -20.77152 -19.55249 -18.05356 -17.58363 -17.11583 -16.98643 -16.45580 -16.15465 -15.57384 -14.72138 -14.61052 -14.35959 -14.09533 -13.93524 -13.82061 -13.59590 -12.88924 -12.61497 -12.47775 -12.09759 -12.05654 -11.78630 -11.61053 -11.34075 -11.12433 -10.70449 -10.43296 -10.37872 -10.29974 -10.15298 -9.59275 -8.94832 -8.50403 -8.07023 -7.73331 -6.48921 -3.90826 0.76740 1.43800 2.63830 2.78404 3.14214 3.24234 3.30673 3.73796 3.77702 3.82077 4.12949 4.60267 4.65862 4.83142 5.02228 5.11537 5.16382 5.23386 5.35438 5.41884 5.46456 5.58425 5.68783 5.72261 5.95670 6.05792 6.12953 6.28026 6.43447 6.59837 6.75853 7.35585 7.48927 7.73983 7.90427 8.00281 8.50007 9.08346 9.40758 9.90796 10.68444 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043253 B = 0.003170 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.195210 B = 8830.268461 C = 9451.686944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.180 4.180 3 C -0.042 4.042 4 C -0.187 4.187 5 C -0.017 4.017 6 C -0.201 4.201 7 C 0.515 3.485 8 O -0.527 6.527 9 O -0.320 6.320 10 C 0.062 3.938 11 C 0.439 3.561 12 O -0.575 6.575 13 N -0.553 5.553 14 C -0.302 4.302 15 H 0.106 0.894 16 C 0.024 3.976 17 N -0.898 5.898 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 C 0.277 3.723 23 N -0.860 5.860 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.143 0.857 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.395 0.605 33 H 0.274 0.726 34 H 0.395 0.605 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.884 10.042 -0.824 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C -0.061 4.061 4 C -0.207 4.207 5 C -0.036 4.036 6 C -0.207 4.207 7 C 0.362 3.638 8 O -0.419 6.419 9 O -0.234 6.234 10 C -0.016 4.016 11 C 0.224 3.776 12 O -0.459 6.459 13 N -0.191 5.191 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.761 3.239 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C 0.168 3.832 23 N -0.406 5.406 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.224 0.776 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.566 10.256 -0.778 21.224 hybrid contribution 0.522 -1.076 0.000 1.196 sum -18.044 9.180 -0.778 20.260 Atomic orbital electron populations 1.20589 0.90825 1.02727 1.01906 1.19429 0.96059 0.91499 1.11507 1.21042 0.94243 0.96859 0.93959 1.20906 0.93906 0.98145 1.07760 1.21436 1.01009 0.90603 0.90510 1.18691 0.91100 0.91616 1.19329 1.21052 0.81297 0.89058 0.72370 1.90601 1.69587 1.33419 1.48296 1.86610 1.19494 1.34684 1.82601 1.22742 0.92810 0.82628 1.03413 1.19321 0.86116 0.86271 0.85904 1.90559 1.77058 1.23278 1.55035 1.41698 1.06723 1.07240 1.63398 1.19730 0.80596 0.95259 1.47500 0.87609 1.25311 1.00991 0.94537 0.96954 1.69616 1.36582 0.98081 1.49584 0.85797 0.81477 0.78191 0.78481 1.20267 1.20824 1.19262 1.17444 0.88943 0.86952 0.89887 1.42904 1.18794 1.09509 1.69361 0.91702 0.91901 0.91385 0.85717 0.85454 0.83963 0.89574 0.89545 0.77174 0.91649 0.77582 0.74993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.44 36.01 0.34 -0.38 16 2 C -0.18 -1.83 5.89 -104.46 -0.62 -2.44 16 3 C -0.04 -0.40 9.68 -39.55 -0.38 -0.78 16 4 C -0.19 -2.01 10.02 -39.63 -0.40 -2.41 16 5 C -0.02 -0.23 9.61 -39.19 -0.38 -0.60 16 6 C -0.20 -2.95 5.89 -104.82 -0.62 -3.57 16 7 C 0.51 8.83 7.86 34.41 0.27 9.10 16 8 O -0.53 -9.17 13.61 -19.28 -0.26 -9.43 16 9 O -0.32 -6.22 9.02 -47.35 -0.43 -6.65 16 10 C 0.06 1.21 5.95 36.01 0.21 1.42 16 11 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16 12 O -0.58 -16.11 16.08 -14.11 -0.23 -16.33 16 13 N -0.55 -14.12 5.29 -10.96 -0.06 -14.18 16 14 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 15 H 0.11 3.06 7.16 -52.48 -0.38 2.69 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 18 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.28 3.44 6.74 -83.61 -0.56 2.87 16 23 N -0.86 -9.36 8.08 32.55 0.26 -9.10 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.41 6.99 -51.93 -0.36 0.05 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.14 2.01 7.62 -52.49 -0.40 1.61 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.40 3.17 7.52 -40.82 -0.31 2.86 16 35 H 0.41 5.08 6.14 -40.82 -0.25 4.83 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -32.26 310.39 -6.47 -38.74 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -3.69 Total: 14.12 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.45 Total: 5.88 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.93 Total: -46.79 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.92 Total: -32.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.26 -6.47 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041099132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.498 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds