Wall clock time and date at job start Tue Mar 31 2020 00:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37985 * 119.96694 * 2 1 4 4 C 1.38586 * 120.43533 * 180.02562 * 3 2 1 5 5 C 1.37756 * 120.36137 * 0.24864 * 4 3 2 6 6 C 1.39765 * 119.92072 * 359.47820 * 5 4 3 7 7 C 1.47294 * 120.21422 * 180.25035 * 6 5 4 8 8 O 1.21525 * 119.99693 * 185.87878 * 7 6 5 9 9 O 1.34765 * 119.99756 * 5.88302 * 7 6 5 10 10 C 1.45205 * 116.99505 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47039 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99979 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00119 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00400 * 179.97438 * 13 11 10 15 15 H 1.08006 * 119.99481 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00584 * 179.97438 * 14 13 11 17 17 N 1.31415 * 119.99691 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00270 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47155 * 89.99980 * 18 16 14 20 20 H 1.48501 * 109.47452 * 210.00079 * 18 16 14 21 21 H 1.48507 * 109.47111 * 330.00371 * 18 16 14 22 22 C 1.38920 * 119.96125 * 179.97438 * 2 1 3 23 23 N 1.38841 * 120.18125 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47056 * 89.99816 * 1 2 3 25 25 H 1.08999 * 109.46767 * 210.00482 * 1 2 3 26 26 H 1.09001 * 109.46771 * 330.00463 * 1 2 3 27 27 H 1.07999 * 119.78205 * 359.97364 * 3 2 1 28 28 H 1.08004 * 119.81989 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.03808 * 179.74272 * 5 4 3 30 30 H 1.09005 * 109.47020 * 299.99497 * 10 9 7 31 31 H 1.09000 * 109.47178 * 59.99647 * 10 9 7 32 32 H 0.96999 * 120.00157 * 359.97438 * 13 11 10 33 33 H 0.96994 * 119.99689 * 179.97438 * 17 16 14 34 34 H 0.96994 * 119.99799 * 24.92451 * 23 22 2 35 35 H 0.97004 * 119.99696 * 204.92212 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.1954 0.0000 4 6 3.5821 1.2067 -0.0005 5 6 4.2881 0.0238 -0.0062 6 6 3.6052 -1.1956 -0.0005 7 6 4.3537 -2.4643 -0.0009 8 8 3.7602 -3.5198 -0.1038 9 8 5.6965 -2.4544 0.1127 10 6 6.3681 -3.7418 0.1042 11 6 7.8544 -3.5338 0.2406 12 8 8.3036 -2.4111 0.3352 13 7 8.6846 -4.5953 0.2576 14 6 10.0369 -4.4061 0.3812 15 1 10.4368 -3.4064 0.4653 16 6 10.8928 -5.5005 0.3992 17 7 10.4062 -6.7170 0.2973 18 14 12.7351 -5.2427 0.5683 19 1 13.1052 -5.2439 2.0065 20 1 13.4545 -6.3390 -0.1288 21 1 13.1105 -3.9402 -0.0384 22 6 2.2009 -1.2036 0.0005 23 7 1.5097 -2.4077 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6522 2.1283 -0.0004 28 1 4.1115 2.1481 -0.0009 29 1 5.3680 0.0388 -0.0108 30 1 6.0080 -4.3449 0.9378 31 1 6.1572 -4.2555 -0.8337 32 1 8.3255 -5.4932 0.1824 33 1 11.0037 -7.4809 0.3095 34 1 0.6077 -2.4491 -0.3538 35 1 1.9288 -3.2075 0.3549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041099132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:15 Heat of formation + Delta-G solvation = -118.515278 kcal Electronic energy + Delta-G solvation = -20544.820792 eV Core-core repulsion = 17120.804236 eV Total energy + Delta-G solvation = -3424.016555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84245 -40.43867 -39.74060 -37.54398 -36.06260 -35.48776 -33.66522 -33.41990 -30.70155 -29.67261 -27.62449 -26.70321 -24.98938 -22.32055 -21.98275 -21.44606 -20.09170 -18.81082 -18.17741 -18.08037 -17.79151 -17.46862 -17.28743 -16.54331 -15.88751 -15.77833 -15.36738 -15.30986 -14.80785 -14.63052 -14.31484 -13.96965 -13.63580 -13.55924 -13.22124 -13.00726 -12.93652 -12.67703 -12.49205 -12.14976 -12.12657 -11.89223 -11.69402 -11.59353 -11.26405 -10.53527 -10.13751 -9.83698 -8.60286 -8.53972 -6.04798 -0.23212 0.56128 1.34462 1.35563 1.44653 1.47624 1.57376 1.84890 2.29136 2.82501 2.95864 3.03680 3.11453 3.64512 3.83570 4.00020 4.09875 4.12862 4.19334 4.36184 4.40766 4.61035 4.74043 4.89040 4.94348 5.21563 5.23930 5.31513 5.35442 5.48139 5.59122 5.86929 5.91271 6.41616 6.47452 6.66397 6.91164 7.00986 7.37462 7.91069 8.63216 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043253 B = 0.003170 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.195210 B = 8830.268461 C = 9451.686944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.177 4.177 3 C -0.032 4.032 4 C -0.184 4.184 5 C -0.039 4.039 6 C -0.232 4.232 7 C 0.510 3.490 8 O -0.536 6.536 9 O -0.340 6.340 10 C 0.073 3.927 11 C 0.436 3.564 12 O -0.617 6.617 13 N -0.557 5.557 14 C -0.339 4.339 15 H 0.084 0.916 16 C -0.009 4.009 17 N -0.916 5.916 18 Si 0.999 3.001 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.271 1.271 22 C 0.269 3.731 23 N -0.855 5.855 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.164 0.836 28 H 0.149 0.851 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.400 0.600 33 H 0.281 0.719 34 H 0.409 0.591 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.533 10.914 -0.866 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C -0.051 4.051 4 C -0.204 4.204 5 C -0.057 4.057 6 C -0.238 4.238 7 C 0.359 3.641 8 O -0.429 6.429 9 O -0.255 6.255 10 C -0.005 4.005 11 C 0.223 3.777 12 O -0.504 6.504 13 N -0.194 5.194 14 C -0.468 4.468 15 H 0.102 0.898 16 C -0.210 4.210 17 N -0.556 5.556 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.195 1.195 22 C 0.158 3.842 23 N -0.400 5.400 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.181 0.819 28 H 0.167 0.833 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.264 11.101 -0.830 23.121 hybrid contribution 0.912 -1.293 0.010 1.583 sum -19.352 9.808 -0.820 21.711 Atomic orbital electron populations 1.20682 0.88217 1.03944 1.03118 1.19868 0.97878 0.90664 1.09756 1.21498 0.93712 0.98229 0.91671 1.21192 0.94842 0.97836 1.06513 1.21386 1.00326 0.91580 0.92446 1.18765 0.92097 0.90640 1.22279 1.21577 0.80315 0.90192 0.72031 1.90580 1.69334 1.33892 1.49071 1.86612 1.21141 1.34427 1.83334 1.22514 0.89432 0.83361 1.05155 1.20075 0.88069 0.85308 0.84235 1.90522 1.78424 1.24822 1.56603 1.41728 1.06449 1.07766 1.63489 1.19734 0.82014 0.94936 1.50090 0.89769 1.26147 1.05196 0.93956 0.95662 1.69674 1.38278 0.98657 1.48964 0.84843 0.75937 0.78235 0.78816 1.19385 1.19328 1.19513 1.17668 0.88223 0.88299 0.89986 1.42869 1.19332 1.08865 1.68958 0.90354 0.91495 0.89459 0.81897 0.83326 0.85995 0.87570 0.87697 0.76564 0.90920 0.75954 0.75834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.44 71.24 0.67 -0.38 16 2 C -0.18 -3.10 5.89 -19.76 -0.12 -3.22 16 3 C -0.03 -0.51 9.68 22.29 0.22 -0.29 16 4 C -0.18 -3.66 10.02 22.24 0.22 -3.43 16 5 C -0.04 -1.06 9.61 22.53 0.22 -0.84 16 6 C -0.23 -6.88 5.89 -19.99 -0.12 -7.00 16 7 C 0.51 17.98 7.86 70.20 0.55 18.53 16 8 O -0.54 -18.85 13.61 19.75 0.27 -18.58 16 9 O -0.34 -13.75 9.02 -50.37 -0.45 -14.21 16 10 C 0.07 2.90 5.95 71.24 0.42 3.32 16 11 C 0.44 22.06 7.86 87.66 0.69 22.75 16 12 O -0.62 -36.09 16.08 15.72 0.25 -35.84 16 13 N -0.56 -29.24 5.29 -306.99 -1.62 -30.86 16 14 C -0.34 -19.33 9.68 84.04 0.81 -18.51 16 15 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 16 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 17 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 18 Si 1.00 42.46 29.55 68.60 2.03 44.49 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 C 0.27 6.37 6.74 38.73 0.26 6.63 16 23 N -0.86 -17.69 8.08 -50.93 -0.41 -18.10 16 24 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.65 6.99 -2.39 -0.02 0.63 16 26 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 28 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.12 3.73 7.62 -2.91 -0.02 3.71 16 30 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 31 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 32 H 0.40 19.76 7.90 -92.71 -0.73 19.02 16 33 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.41 5.84 7.52 -92.71 -0.70 5.15 16 35 H 0.41 9.83 6.14 -92.71 -0.57 9.26 16 Total: -1.00 -71.12 310.39 3.81 -67.31 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.83 Total: 37.12 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 4.30 Total: 17.55 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -1.75 Total: -97.85 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: 0.07 Total: -68.62 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -71.12 3.81 -67.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041099132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.206 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds