Wall clock time and date at job start Tue Mar 31 2020 00:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37763 * 120.04052 * 2 1 4 4 C 1.38589 * 120.35995 * 180.02562 * 3 2 1 5 5 C 1.37995 * 120.43404 * 359.74378 * 4 3 2 6 6 C 1.38916 * 120.07081 * 0.51177 * 5 4 3 7 7 N 1.38834 * 120.18276 * 179.76857 * 6 5 4 8 8 C 1.39761 * 120.03632 * 180.02562 * 2 1 3 9 9 C 1.47296 * 120.21664 * 359.95459 * 8 2 1 10 10 O 1.21516 * 120.00324 * 270.02217 * 9 8 2 11 11 O 1.34766 * 119.99488 * 90.02389 * 9 8 2 12 12 C 1.45203 * 116.99945 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47307 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99816 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99997 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00051 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00200 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00040 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99947 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99747 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47000 * 120.00515 * 20 18 16 23 23 H 1.48505 * 109.46901 * 240.00059 * 20 18 16 24 24 H 1.09001 * 109.47526 * 269.98030 * 1 2 3 25 25 H 1.09002 * 109.47443 * 29.97983 * 1 2 3 26 26 H 1.09000 * 109.47608 * 149.98280 * 1 2 3 27 27 H 1.07995 * 119.82001 * 0.04193 * 3 2 1 28 28 H 1.07999 * 119.78298 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.96277 * 180.27408 * 5 4 3 30 30 H 0.97001 * 120.00471 * 179.72579 * 7 6 5 31 31 H 0.97005 * 119.99803 * 359.44397 * 7 6 5 32 32 H 1.08997 * 109.46933 * 300.00106 * 12 11 9 33 33 H 1.09003 * 109.46817 * 59.99856 * 12 11 9 34 34 H 0.97003 * 120.00217 * 0.02562 * 15 13 12 35 35 H 0.97000 * 119.99682 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1926 0.0000 4 6 3.5825 1.2003 -0.0005 5 6 4.2881 0.0144 0.0042 6 6 3.6109 -1.1985 -0.0011 7 7 4.3186 -2.3930 -0.0011 8 6 2.2065 -1.2099 -0.0005 9 6 1.4757 -2.4888 -0.0001 10 8 1.1746 -3.0162 1.0524 11 8 1.1410 -3.0739 -1.1671 12 6 0.4211 -4.3326 -1.0908 13 6 0.1344 -4.8326 -2.4832 14 8 0.5012 -4.1914 -3.4453 15 7 -0.5296 -5.9921 -2.6595 16 6 -0.7899 -6.4472 -3.9262 17 1 -0.4633 -5.8764 -4.7829 18 6 -1.4740 -7.6429 -4.1079 19 7 -1.8718 -8.3372 -3.0656 20 14 -1.8281 -8.2634 -5.8340 21 1 -1.2798 -7.3048 -6.8267 22 1 -1.1910 -9.5913 -6.0230 23 1 -3.2957 -8.3870 -6.0241 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6544 2.1265 0.0007 28 1 4.1137 2.1406 -0.0009 29 1 5.3680 0.0293 0.0083 30 1 3.8431 -3.2385 -0.0009 31 1 5.2885 -2.3821 -0.0056 32 1 1.0269 -5.0659 -0.5585 33 1 -0.5182 -4.1821 -0.5585 34 1 -0.8233 -6.5046 -1.8901 35 1 -2.3497 -9.1718 -3.1925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041100009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:03 Heat of formation + Delta-G solvation = -101.786567 kcal Electronic energy + Delta-G solvation = -20826.016003 eV Core-core repulsion = 17402.724859 eV Total energy + Delta-G solvation = -3423.291144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66768 -39.08539 -38.02101 -35.98828 -35.18737 -34.00445 -32.55597 -31.38627 -29.62335 -28.23849 -27.07758 -24.82846 -23.71538 -21.54354 -20.71692 -19.58429 -18.07663 -17.96689 -17.36032 -16.81763 -16.53715 -15.94177 -15.67658 -14.86169 -14.60847 -14.42745 -14.03017 -13.86088 -13.70836 -13.51385 -12.97864 -12.72730 -12.39351 -12.27913 -12.06067 -11.69801 -11.62983 -11.39499 -11.15662 -10.70509 -10.43754 -10.42083 -10.39452 -10.29484 -9.62249 -8.91019 -8.52005 -8.08891 -7.74315 -6.50712 -3.92643 1.04604 1.44963 2.18520 2.78551 3.11245 3.23490 3.31232 3.60897 3.64788 3.72922 4.11299 4.60212 4.65166 4.80513 5.05410 5.13862 5.18690 5.23285 5.30258 5.49809 5.56065 5.63907 5.66605 5.68049 5.93959 6.02994 6.06793 6.29101 6.43421 6.56539 6.68867 7.20953 7.47484 7.48036 7.81856 7.95586 8.48077 9.06750 9.38757 9.88837 10.66611 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.003479 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.954860 B = 8047.489388 C = 8119.710376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.007 3.993 3 C -0.184 4.184 4 C -0.047 4.047 5 C -0.208 4.208 6 C 0.264 3.736 7 N -0.865 5.865 8 C -0.189 4.189 9 C 0.515 3.485 10 O -0.504 6.504 11 O -0.318 6.318 12 C 0.056 3.944 13 C 0.438 3.562 14 O -0.574 6.574 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.107 0.893 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.400 0.600 31 H 0.404 0.596 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.395 0.605 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 14.406 8.718 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 C -0.204 4.204 4 C -0.066 4.066 5 C -0.231 4.231 6 C 0.156 3.844 7 N -0.401 5.401 8 C -0.195 4.195 9 C 0.357 3.643 10 O -0.392 6.392 11 O -0.232 6.232 12 C -0.022 4.022 13 C 0.223 3.777 14 O -0.457 6.457 15 N -0.190 5.190 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.229 0.771 31 H 0.233 0.767 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.126 14.470 8.363 19.042 hybrid contribution -0.244 -1.266 -0.192 1.304 sum 8.882 13.204 8.171 17.888 Atomic orbital electron populations 1.20959 0.90680 1.03759 1.02965 1.19620 0.95863 0.90935 0.92922 1.20662 0.94101 0.96927 1.08701 1.20993 0.93985 0.97409 0.94229 1.20476 0.99635 0.90544 1.12445 1.17525 0.89006 0.87307 0.90532 1.42389 1.09355 1.05426 1.82978 1.18353 0.91398 0.90855 1.18882 1.21196 0.76411 0.84535 0.82113 1.90852 1.51443 1.64030 1.32922 1.86793 1.67413 1.36226 1.32752 1.22805 0.97024 0.83427 0.98947 1.19305 0.85432 0.84206 0.88748 1.90574 1.56001 1.57833 1.41337 1.41710 1.49086 1.18727 1.09522 1.19781 1.33928 1.04828 0.84557 0.87563 1.25311 0.96655 0.96140 0.99662 1.69620 1.38600 1.15709 1.29849 0.85746 0.78107 0.78659 0.81528 1.19075 1.20623 1.20602 0.90285 0.90346 0.91220 0.85541 0.85588 0.85494 0.77107 0.76744 0.89604 0.89481 0.77179 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.62 36.00 0.35 -1.17 16 2 C 0.01 0.10 5.91 -104.23 -0.62 -0.52 16 3 C -0.18 -1.96 9.67 -39.63 -0.38 -2.34 16 4 C -0.05 -0.45 10.03 -39.54 -0.40 -0.85 16 5 C -0.21 -2.16 9.88 -39.42 -0.39 -2.55 16 6 C 0.26 3.40 6.77 -83.61 -0.57 2.84 16 7 N -0.86 -9.54 8.99 32.55 0.29 -9.25 16 8 C -0.19 -2.84 5.77 -104.81 -0.60 -3.45 16 9 C 0.51 8.92 4.60 34.41 0.16 9.08 16 10 O -0.50 -9.36 16.90 -19.28 -0.33 -9.69 16 11 O -0.32 -6.22 9.77 -47.35 -0.46 -6.68 16 12 C 0.06 1.08 5.95 36.01 0.21 1.29 16 13 C 0.44 10.67 7.86 -10.99 -0.09 10.59 16 14 O -0.57 -16.17 16.08 -14.11 -0.23 -16.40 16 15 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 20 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.07 0.97 7.09 -51.93 -0.37 0.61 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.40 4.84 7.68 -40.82 -0.31 4.52 16 31 H 0.40 3.14 8.84 -40.82 -0.36 2.78 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -33.41 315.82 -6.72 -40.13 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -3.83 Total: 13.87 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.56 Total: 4.98 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.96 Total: -46.65 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.02 Total: -32.77 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.41 -6.72 -40.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041100009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.661 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds