Wall clock time and date at job start Tue Mar 31 2020 00:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37763 * 120.04052 * 2 1 4 4 C 1.38589 * 120.35995 * 180.02562 * 3 2 1 5 5 C 1.37995 * 120.43404 * 359.74378 * 4 3 2 6 6 C 1.38916 * 120.07081 * 0.51177 * 5 4 3 7 7 N 1.38834 * 120.18276 * 179.76857 * 6 5 4 8 8 C 1.39761 * 120.03632 * 180.02562 * 2 1 3 9 9 C 1.47296 * 120.21664 * 359.95459 * 8 2 1 10 10 O 1.21516 * 120.00324 * 270.02217 * 9 8 2 11 11 O 1.34766 * 119.99488 * 90.02389 * 9 8 2 12 12 C 1.45203 * 116.99945 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47307 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99816 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99997 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00051 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00200 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00040 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99947 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99747 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47000 * 120.00515 * 20 18 16 23 23 H 1.48505 * 109.46901 * 240.00059 * 20 18 16 24 24 H 1.09001 * 109.47526 * 269.98030 * 1 2 3 25 25 H 1.09002 * 109.47443 * 29.97983 * 1 2 3 26 26 H 1.09000 * 109.47608 * 149.98280 * 1 2 3 27 27 H 1.07995 * 119.82001 * 0.04193 * 3 2 1 28 28 H 1.07999 * 119.78298 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.96277 * 180.27408 * 5 4 3 30 30 H 0.97001 * 120.00471 * 179.72579 * 7 6 5 31 31 H 0.97005 * 119.99803 * 359.44397 * 7 6 5 32 32 H 1.08997 * 109.46933 * 300.00106 * 12 11 9 33 33 H 1.09003 * 109.46817 * 59.99856 * 12 11 9 34 34 H 0.97003 * 120.00217 * 0.02562 * 15 13 12 35 35 H 0.97000 * 119.99682 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1926 0.0000 4 6 3.5825 1.2003 -0.0005 5 6 4.2881 0.0144 0.0042 6 6 3.6109 -1.1985 -0.0011 7 7 4.3186 -2.3930 -0.0011 8 6 2.2065 -1.2099 -0.0005 9 6 1.4757 -2.4888 -0.0001 10 8 1.1746 -3.0162 1.0524 11 8 1.1410 -3.0739 -1.1671 12 6 0.4211 -4.3326 -1.0908 13 6 0.1344 -4.8326 -2.4832 14 8 0.5012 -4.1914 -3.4453 15 7 -0.5296 -5.9921 -2.6595 16 6 -0.7899 -6.4472 -3.9262 17 1 -0.4633 -5.8764 -4.7829 18 6 -1.4740 -7.6429 -4.1079 19 7 -1.8718 -8.3372 -3.0656 20 14 -1.8281 -8.2634 -5.8340 21 1 -1.2798 -7.3048 -6.8267 22 1 -1.1910 -9.5913 -6.0230 23 1 -3.2957 -8.3870 -6.0241 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6544 2.1265 0.0007 28 1 4.1137 2.1406 -0.0009 29 1 5.3680 0.0293 0.0083 30 1 3.8431 -3.2385 -0.0009 31 1 5.2885 -2.3821 -0.0056 32 1 1.0269 -5.0659 -0.5585 33 1 -0.5182 -4.1821 -0.5585 34 1 -0.8233 -6.5046 -1.8901 35 1 -2.3497 -9.1718 -3.1925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041100009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:01 Heat of formation + Delta-G solvation = -124.464556 kcal Electronic energy + Delta-G solvation = -20826.999395 eV Core-core repulsion = 17402.724859 eV Total energy + Delta-G solvation = -3424.274535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -41.93951 -40.38502 -39.71405 -37.48407 -36.06557 -36.05401 -33.49927 -33.38570 -30.76300 -29.72921 -27.96538 -26.70121 -24.90582 -22.43935 -21.90674 -21.47385 -20.10899 -19.22195 -18.42305 -18.13055 -17.65757 -17.43423 -17.21579 -16.59978 -15.91197 -15.80733 -15.49408 -15.17071 -14.85016 -14.70376 -14.32030 -13.91713 -13.75149 -13.59010 -13.58465 -13.22973 -12.96151 -12.66647 -12.49143 -12.26309 -12.12125 -11.94679 -11.67788 -11.61382 -11.52076 -10.56318 -10.14666 -9.80952 -8.60857 -8.54776 -6.05735 0.12990 0.59228 0.86025 1.32829 1.37416 1.45574 1.58676 1.82943 2.28349 2.75867 2.79237 3.00513 3.10325 3.61218 3.74931 3.97206 4.03180 4.07456 4.17129 4.36897 4.41751 4.54165 4.66186 4.67806 4.88484 5.08874 5.11297 5.22479 5.34915 5.49644 5.62010 5.85922 5.88585 6.30957 6.40190 6.51935 6.72806 7.00208 7.36157 7.89895 8.62383 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.003479 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.954860 B = 8047.489388 C = 8119.710376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.013 4.013 3 C -0.183 4.183 4 C -0.039 4.039 5 C -0.208 4.208 6 C 0.249 3.751 7 N -0.862 5.862 8 C -0.231 4.231 9 C 0.523 3.477 10 O -0.523 6.523 11 O -0.337 6.337 12 C 0.066 3.934 13 C 0.437 3.563 14 O -0.618 6.618 15 N -0.555 5.555 16 C -0.339 4.339 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 0.999 3.001 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.269 1.269 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.039 0.961 27 H 0.154 0.846 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.393 0.607 31 H 0.417 0.583 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.935 15.665 8.986 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 C -0.203 4.203 4 C -0.057 4.057 5 C -0.230 4.230 6 C 0.141 3.859 7 N -0.400 5.400 8 C -0.238 4.238 9 C 0.368 3.632 10 O -0.412 6.412 11 O -0.253 6.253 12 C -0.012 4.012 13 C 0.223 3.777 14 O -0.504 6.504 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.102 0.898 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.821 3.179 21 H -0.196 1.196 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.058 0.942 27 H 0.172 0.828 28 H 0.183 0.817 29 H 0.174 0.826 30 H 0.220 0.780 31 H 0.249 0.751 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.235 0.765 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.970 15.719 8.672 20.535 hybrid contribution -0.457 -1.589 -0.231 1.670 sum 9.513 14.130 8.441 19.010 Atomic orbital electron populations 1.20976 0.90574 1.03399 1.03320 1.19887 0.96339 0.91344 0.93785 1.21038 0.94948 0.96881 1.07448 1.21505 0.93721 0.98711 0.91762 1.20901 1.01182 0.89754 1.11179 1.17834 0.88484 0.88706 0.90870 1.42408 1.10123 1.04762 1.82687 1.18552 0.92532 0.90087 1.22583 1.21666 0.75652 0.84862 0.81028 1.90817 1.52416 1.64789 1.33217 1.86801 1.67726 1.36179 1.34544 1.22603 0.98574 0.84388 0.95601 1.20038 0.84011 0.83349 0.90288 1.90534 1.57522 1.58941 1.43447 1.41730 1.49225 1.19178 1.09156 1.19764 1.36114 1.05977 0.84938 0.89833 1.26136 0.95532 0.95524 1.03663 1.69674 1.38203 1.15992 1.31556 0.84793 0.78392 0.78119 0.76552 1.19605 1.19329 1.19361 0.89598 0.88028 0.94156 0.82804 0.81699 0.82578 0.77990 0.75086 0.87318 0.87689 0.76543 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.62 71.23 0.69 -2.32 16 2 C -0.01 -0.33 5.91 -19.61 -0.12 -0.44 16 3 C -0.18 -3.41 9.67 22.24 0.22 -3.20 16 4 C -0.04 -0.60 10.03 22.30 0.22 -0.37 16 5 C -0.21 -3.74 9.88 22.37 0.22 -3.52 16 6 C 0.25 6.20 6.77 38.73 0.26 6.46 16 7 N -0.86 -18.63 8.99 -50.93 -0.46 -19.08 16 8 C -0.23 -6.99 5.77 -19.99 -0.12 -7.10 16 9 C 0.52 18.60 4.60 70.20 0.32 18.92 16 10 O -0.52 -19.81 16.90 19.78 0.33 -19.47 16 11 O -0.34 -13.64 9.77 -50.38 -0.49 -14.13 16 12 C 0.07 2.59 5.95 71.24 0.42 3.02 16 13 C 0.44 21.93 7.86 87.66 0.69 22.62 16 14 O -0.62 -36.22 16.08 15.73 0.25 -35.97 16 15 N -0.56 -28.91 5.29 -306.99 -1.62 -30.53 16 16 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 17 H 0.08 5.05 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 19 N -0.91 -48.64 13.05 21.66 0.28 -48.36 16 20 Si 1.00 42.17 29.55 68.60 2.03 44.20 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 26 H 0.04 1.17 7.09 -2.39 -0.02 1.15 16 27 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 28 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.39 9.65 7.68 -92.71 -0.71 8.94 16 31 H 0.42 6.05 8.84 -92.70 -0.82 5.23 16 32 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 35 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -73.66 315.82 3.32 -70.34 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -1.10 Total: 37.29 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 4.09 Total: 15.72 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -1.80 Total: -97.98 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: 0.10 Total: -69.58 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -73.66 3.32 -70.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041100009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.121 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds