Wall clock time and date at job start Tue Mar 31 2020 00:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00313 * 2 1 4 4 H 1.48499 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47055 * 300.00120 * 3 2 1 6 6 H 1.48504 * 109.47083 * 59.99795 * 3 2 1 7 7 C 1.37885 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99643 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99659 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40195 * 66.46617 * 9 7 2 11 11 O 1.42092 * 106.40328 * 293.53840 * 9 7 2 12 12 N 1.65603 * 107.21362 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99863 * 65.00581 * 12 9 7 14 14 C 1.53006 * 109.47109 * 164.99583 * 13 12 9 15 15 C 1.53002 * 109.46808 * 179.97438 * 14 13 12 16 16 N 1.46908 * 109.46707 * 179.97438 * 15 14 13 17 17 C 1.47024 * 110.99261 * 46.32476 * 16 15 14 18 18 C 1.53103 * 109.24985 * 182.34870 * 17 16 15 19 19 O 1.43012 * 109.29295 * 303.21723 * 18 17 16 20 20 C 1.43011 * 113.74271 * 58.65008 * 19 18 17 21 21 C 1.47018 * 110.99661 * 170.00016 * 16 15 14 22 22 H 0.97001 * 120.00155 * 0.02562 * 1 2 3 23 23 H 0.96997 * 120.00472 * 244.99578 * 12 9 7 24 24 H 1.09002 * 109.47542 * 44.99927 * 13 12 9 25 25 H 1.08999 * 109.46822 * 284.99337 * 13 12 9 26 26 H 1.09002 * 109.46638 * 59.99790 * 14 13 12 27 27 H 1.08999 * 109.47077 * 299.99598 * 14 13 12 28 28 H 1.09003 * 109.46906 * 60.00364 * 15 14 13 29 29 H 1.08999 * 109.47302 * 299.99863 * 15 14 13 30 30 H 1.08998 * 109.47369 * 62.43595 * 17 16 15 31 31 H 1.08998 * 109.54483 * 302.29802 * 17 16 15 32 32 H 1.09002 * 109.50635 * 183.25881 * 18 17 16 33 33 H 1.09003 * 109.50698 * 63.17493 * 18 17 16 34 34 H 1.08997 * 109.50806 * 61.26171 * 20 19 18 35 35 H 1.08997 * 109.50924 * 181.35636 * 20 19 18 36 36 H 1.08994 * 109.50209 * 57.67478 * 21 16 15 37 37 H 1.08997 * 109.50514 * 297.54292 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2483 -3.9354 -0.0019 13 6 3.1402 -4.1093 1.1472 14 6 3.8054 -5.4852 1.0728 15 6 4.7373 -5.6665 2.2726 16 7 5.3756 -6.9878 2.2015 17 6 5.8864 -7.2538 0.8487 18 6 6.4894 -8.6604 0.8044 19 8 7.5099 -8.7686 1.8005 20 6 7.0463 -8.5166 3.1297 21 6 6.4499 -7.1082 3.1980 22 1 -0.4850 0.8400 -0.0004 23 1 2.3166 -4.5322 -0.7635 24 1 2.5637 -4.0340 2.0693 25 1 3.9062 -3.3341 1.1332 26 1 4.3819 -5.5605 0.1507 27 1 3.0394 -6.2604 1.0869 28 1 4.1612 -5.5910 3.1948 29 1 5.5034 -4.8913 2.2582 30 1 6.6537 -6.5209 0.5994 31 1 5.0695 -7.1853 0.1305 32 1 6.9212 -8.8405 -0.1801 33 1 5.7101 -9.3969 1.0003 34 1 6.2828 -9.2483 3.3937 35 1 7.8806 -8.5934 3.8269 36 1 6.0436 -6.9328 4.1940 37 1 7.2266 -6.3734 2.9863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:14 Heat of formation + Delta-G solvation = -137.421719 kcal Electronic energy + Delta-G solvation = -19905.342265 eV Core-core repulsion = 16615.949816 eV Total energy + Delta-G solvation = -3289.392449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82644 -36.84197 -35.24005 -34.72644 -33.93429 -33.08034 -31.55807 -30.69155 -27.28235 -26.13189 -24.39418 -23.70128 -21.40763 -20.40725 -18.91857 -17.41072 -16.89259 -16.37007 -16.12938 -15.66120 -15.37057 -15.31779 -15.00195 -14.77913 -14.39743 -13.93706 -13.89042 -13.21544 -12.73861 -12.50436 -12.23576 -12.01148 -11.71881 -11.58203 -11.32541 -11.24079 -11.12669 -10.89799 -10.64822 -10.58696 -10.28017 -10.25953 -10.17307 -9.90278 -9.26102 -9.00578 -8.58637 -8.47405 -6.70321 -5.32011 2.35557 3.04789 3.13222 3.20068 3.49988 3.66268 4.06162 4.57075 4.64240 4.68413 4.74184 4.85402 4.90103 4.98034 5.08705 5.19254 5.26886 5.33862 5.37759 5.52162 5.54573 5.63189 5.70632 5.75569 5.87275 5.90382 6.22495 6.30807 6.52942 6.72359 6.75441 6.86736 6.88034 7.32068 7.90744 7.98485 8.89050 10.23898 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.003555 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.744799 B = 7873.899626 C = 8263.930430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.008 7.008 11 O -1.007 7.007 12 N -1.138 6.138 13 C 0.128 3.872 14 C -0.130 4.130 15 C 0.055 3.945 16 N -0.537 5.537 17 C 0.009 3.991 18 C 0.063 3.937 19 O -0.389 6.389 20 C 0.064 3.936 21 C 0.016 3.984 22 H 0.290 0.710 23 H 0.401 0.599 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 -13.155 4.399 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.998 6.998 11 O -0.997 6.997 12 N -0.892 5.892 13 C 0.001 3.999 14 C -0.169 4.169 15 C -0.073 4.073 16 N -0.263 5.263 17 C -0.119 4.119 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.112 4.112 22 H 0.101 0.899 23 H 0.231 0.769 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.314 -13.490 4.649 18.847 hybrid contribution 1.356 1.760 -0.442 2.265 sum 13.669 -11.730 4.207 18.497 Atomic orbital electron populations 1.69902 1.06779 1.30614 1.40183 1.24750 0.94454 1.00834 0.88513 0.86140 0.80401 0.80472 0.78569 1.18690 1.19603 1.19602 1.30594 1.06098 1.11984 1.66776 0.88018 1.00347 0.72054 0.73215 0.72788 1.93372 1.73120 1.87669 1.45643 1.93353 1.72889 1.87525 1.45957 1.55961 1.55785 1.51120 1.26366 1.20963 0.93318 0.95932 0.89727 1.21956 0.99041 0.98108 0.97829 1.22147 0.96963 0.88239 0.99944 1.62291 1.28981 1.30609 1.04390 1.22930 0.99704 0.97476 0.91791 1.22697 0.90904 0.95638 0.92156 1.87971 1.35526 1.91204 1.16012 1.22656 0.99284 0.95015 0.84354 1.22794 0.93277 0.97894 0.97233 0.89942 0.76858 0.90623 0.92416 0.91305 0.90363 0.89799 0.94181 0.93843 0.88658 0.88502 0.92239 0.92253 0.88566 0.89476 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.88 13.19 55.43 0.73 -24.15 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -1.02 -27.98 9.72 30.60 0.30 -27.68 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 71.47 5.02 -107.50 -0.54 70.93 16 10 O -1.01 -29.45 18.02 -57.17 -1.03 -30.48 16 11 O -1.01 -29.27 17.49 -57.17 -1.00 -30.27 16 12 N -1.14 -21.96 6.00 -10.61 -0.06 -22.03 16 13 C 0.13 2.08 6.22 -4.04 -0.03 2.06 16 14 C -0.13 -1.61 4.62 -26.73 -0.12 -1.73 16 15 C 0.06 0.61 5.28 -3.82 -0.02 0.59 16 16 N -0.54 -5.64 4.88 -234.29 -1.14 -6.78 16 17 C 0.01 0.09 4.94 -3.70 -0.02 0.07 16 18 C 0.06 0.57 7.01 37.21 0.26 0.83 16 19 O -0.39 -4.10 10.83 -35.23 -0.38 -4.48 16 20 C 0.06 0.54 7.01 37.21 0.26 0.80 16 21 C 0.02 0.15 5.63 -3.71 -0.02 0.13 16 22 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.40 6.64 8.65 -34.48 -0.30 6.35 16 24 H 0.08 1.30 7.75 -51.93 -0.40 0.89 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.77 6.28 -51.93 -0.33 0.45 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.88 6.05 -51.93 -0.31 0.56 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -35.57 316.52 -8.70 -44.26 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.53 Total: 4.07 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 0.51 Total: -21.34 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.47 Total: -52.96 kcal Atomic # 8 Polarization: -62.81 SS G_CDS: -2.41 Total: -65.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 71.47 SS G_CDS: -0.54 Total: 70.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.57 -8.70 -44.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.158 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds