Wall clock time and date at job start Tue Mar 31 2020 00:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00313 * 2 1 4 4 H 1.48499 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47055 * 300.00120 * 3 2 1 6 6 H 1.48504 * 109.47083 * 59.99795 * 3 2 1 7 7 C 1.37885 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99643 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99659 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40195 * 66.46617 * 9 7 2 11 11 O 1.42092 * 106.40328 * 293.53840 * 9 7 2 12 12 N 1.65603 * 107.21362 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99863 * 65.00581 * 12 9 7 14 14 C 1.53006 * 109.47109 * 164.99583 * 13 12 9 15 15 C 1.53002 * 109.46808 * 179.97438 * 14 13 12 16 16 N 1.46908 * 109.46707 * 179.97438 * 15 14 13 17 17 C 1.47024 * 110.99261 * 46.32476 * 16 15 14 18 18 C 1.53103 * 109.24985 * 182.34870 * 17 16 15 19 19 O 1.43012 * 109.29295 * 303.21723 * 18 17 16 20 20 C 1.43011 * 113.74271 * 58.65008 * 19 18 17 21 21 C 1.47018 * 110.99661 * 170.00016 * 16 15 14 22 22 H 0.97001 * 120.00155 * 0.02562 * 1 2 3 23 23 H 0.96997 * 120.00472 * 244.99578 * 12 9 7 24 24 H 1.09002 * 109.47542 * 44.99927 * 13 12 9 25 25 H 1.08999 * 109.46822 * 284.99337 * 13 12 9 26 26 H 1.09002 * 109.46638 * 59.99790 * 14 13 12 27 27 H 1.08999 * 109.47077 * 299.99598 * 14 13 12 28 28 H 1.09003 * 109.46906 * 60.00364 * 15 14 13 29 29 H 1.08999 * 109.47302 * 299.99863 * 15 14 13 30 30 H 1.08998 * 109.47369 * 62.43595 * 17 16 15 31 31 H 1.08998 * 109.54483 * 302.29802 * 17 16 15 32 32 H 1.09002 * 109.50635 * 183.25881 * 18 17 16 33 33 H 1.09003 * 109.50698 * 63.17493 * 18 17 16 34 34 H 1.08997 * 109.50806 * 61.26171 * 20 19 18 35 35 H 1.08997 * 109.50924 * 181.35636 * 20 19 18 36 36 H 1.08994 * 109.50209 * 57.67478 * 21 16 15 37 37 H 1.08997 * 109.50514 * 297.54292 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2483 -3.9354 -0.0019 13 6 3.1402 -4.1093 1.1472 14 6 3.8054 -5.4852 1.0728 15 6 4.7373 -5.6665 2.2726 16 7 5.3756 -6.9878 2.2015 17 6 5.8864 -7.2538 0.8487 18 6 6.4894 -8.6604 0.8044 19 8 7.5099 -8.7686 1.8005 20 6 7.0463 -8.5166 3.1297 21 6 6.4499 -7.1082 3.1980 22 1 -0.4850 0.8400 -0.0004 23 1 2.3166 -4.5322 -0.7635 24 1 2.5637 -4.0340 2.0693 25 1 3.9062 -3.3341 1.1332 26 1 4.3819 -5.5605 0.1507 27 1 3.0394 -6.2604 1.0869 28 1 4.1612 -5.5910 3.1948 29 1 5.5034 -4.8913 2.2582 30 1 6.6537 -6.5209 0.5994 31 1 5.0695 -7.1853 0.1305 32 1 6.9212 -8.8405 -0.1801 33 1 5.7101 -9.3969 1.0003 34 1 6.2828 -9.2483 3.3937 35 1 7.8806 -8.5934 3.8269 36 1 6.0436 -6.9328 4.1940 37 1 7.2266 -6.3734 2.9863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:13 Heat of formation + Delta-G solvation = -168.422318 kcal Electronic energy + Delta-G solvation = -19906.686552 eV Core-core repulsion = 16615.949816 eV Total energy + Delta-G solvation = -3290.736736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.57139 -37.84970 -37.35210 -36.14055 -36.01032 -35.16360 -32.35224 -31.72760 -28.26112 -28.20552 -25.17573 -24.73746 -22.40778 -21.26948 -20.87169 -19.32378 -18.17792 -17.77035 -17.10837 -17.01855 -16.66350 -16.51480 -16.01990 -15.90775 -15.80177 -15.38201 -15.23616 -14.65012 -14.01623 -13.67577 -13.57645 -13.28933 -13.06990 -13.02669 -12.83600 -12.51707 -12.42459 -12.34126 -12.28562 -12.22434 -11.92590 -11.72629 -11.42364 -11.26613 -10.98891 -10.64340 -10.17022 -9.37717 -8.75629 -7.48528 0.36816 1.33433 1.34588 1.51916 2.20796 2.57868 2.72279 2.97312 3.04592 3.70136 3.86944 3.96004 4.02510 4.07791 4.12955 4.22705 4.34538 4.38226 4.50882 4.58828 4.64683 4.69134 4.74350 4.77391 4.85231 4.90684 5.00269 5.05064 5.20823 5.24564 5.37714 5.89846 5.95175 5.97646 6.19678 6.41990 6.78503 8.21125 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.003555 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.744799 B = 7873.899626 C = 8263.930430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.247 1.247 5 H -0.260 1.260 6 H -0.259 1.259 7 C -1.041 5.041 8 H 0.121 0.879 9 S 2.722 3.278 10 O -1.046 7.046 11 O -1.044 7.044 12 N -1.121 6.121 13 C 0.120 3.880 14 C -0.118 4.118 15 C 0.058 3.942 16 N -0.545 5.545 17 C 0.007 3.993 18 C 0.062 3.938 19 O -0.407 6.407 20 C 0.062 3.938 21 C 0.015 3.985 22 H 0.299 0.701 23 H 0.416 0.584 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.722 -13.087 4.611 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.170 1.170 5 H -0.185 1.185 6 H -0.183 1.183 7 C -1.174 5.174 8 H 0.139 0.861 9 S 2.822 3.178 10 O -1.036 7.036 11 O -1.034 7.034 12 N -0.881 5.881 13 C -0.007 4.007 14 C -0.157 4.157 15 C -0.070 4.070 16 N -0.271 5.271 17 C -0.121 4.121 18 C -0.015 4.015 19 O -0.326 6.326 20 C -0.014 4.014 21 C -0.113 4.113 22 H 0.109 0.891 23 H 0.250 0.750 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.418 -13.455 4.857 20.310 hybrid contribution 0.725 1.635 -0.486 1.853 sum 15.143 -11.820 4.371 19.701 Atomic orbital electron populations 1.69994 1.08803 1.32285 1.41499 1.26030 0.95372 1.05452 0.87559 0.85087 0.79500 0.75116 0.79353 1.16982 1.18467 1.18334 1.30948 1.07218 1.12672 1.66603 0.86131 0.99806 0.72580 0.73966 0.71425 1.93310 1.74937 1.88441 1.46904 1.93301 1.74583 1.88268 1.47203 1.55318 1.55102 1.49702 1.28011 1.21230 0.92858 0.98793 0.87833 1.21838 0.99162 0.95379 0.99306 1.22068 0.96806 0.88904 0.99212 1.62306 1.29732 1.29921 1.05109 1.22976 0.99712 0.97840 0.91528 1.22791 0.90847 0.95136 0.92688 1.87948 1.36439 1.91285 1.16936 1.22790 1.00088 0.94570 0.83982 1.22860 0.92805 0.98198 0.97393 0.89111 0.75048 0.91854 0.91505 0.89814 0.90337 0.89741 0.93901 0.94404 0.88186 0.87009 0.92058 0.92045 0.86734 0.88381 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.32 13.19 21.45 0.28 -53.04 16 2 C 0.07 3.80 5.46 84.66 0.46 4.26 16 3 Si 0.99 40.90 29.54 68.60 2.03 42.93 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -1.04 -56.67 9.72 67.74 0.66 -56.01 16 8 H 0.12 5.87 7.81 -2.91 -0.02 5.85 16 9 S 2.72 144.91 5.02 -56.49 -0.28 144.62 16 10 O -1.05 -62.36 18.02 -128.00 -2.31 -64.66 16 11 O -1.04 -62.03 17.49 -128.00 -2.24 -64.27 16 12 N -1.12 -42.59 6.00 -187.48 -1.12 -43.71 16 13 C 0.12 3.75 6.22 86.38 0.54 4.29 16 14 C -0.12 -2.69 4.62 30.60 0.14 -2.55 16 15 C 0.06 1.19 5.28 86.30 0.46 1.64 16 16 N -0.55 -10.43 4.88 -895.15 -4.36 -14.80 16 17 C 0.01 0.13 4.94 86.31 0.43 0.56 16 18 C 0.06 1.00 7.01 72.02 0.50 1.51 16 19 O -0.41 -7.88 10.83 -148.98 -1.61 -9.49 16 20 C 0.06 0.94 7.01 72.02 0.50 1.45 16 21 C 0.02 0.25 5.63 86.31 0.49 0.74 16 22 H 0.30 15.93 8.31 -92.71 -0.77 15.16 16 23 H 0.42 13.34 8.65 -96.74 -0.84 12.50 16 24 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.68 6.28 -2.39 -0.01 1.66 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 1.63 6.05 -2.39 -0.01 1.61 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.61 316.52 -5.21 -81.83 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.23 Total: 24.72 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 4.18 Total: -44.12 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -5.21 Total: -111.55 kcal Atomic # 8 Polarization: -132.27 SS G_CDS: -6.16 Total: -138.42 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 144.91 SS G_CDS: -0.28 Total: 144.62 kcal Total: -76.61 -5.21 -81.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.593 kcal (2) G-P(sol) polarization free energy of solvation -76.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds