Wall clock time and date at job start Tue Mar 31 2020 00:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37639 * 120.09910 * 2 1 4 4 C 1.39248 * 119.94636 * 179.97438 * 3 2 1 5 5 N 1.39010 * 119.92388 * 180.02562 * 4 3 2 6 6 C 1.39235 * 120.14681 * 359.75372 * 4 3 2 7 7 C 1.36576 * 120.20502 * 0.50155 * 6 4 3 8 8 C 1.39860 * 120.10111 * 179.97438 * 2 1 3 9 9 C 1.47381 * 120.07608 * 0.04369 * 8 2 1 10 10 O 1.21518 * 119.99290 * 353.74626 * 9 8 2 11 11 O 1.34757 * 120.00421 * 173.73907 * 9 8 2 12 12 C 1.45196 * 117.00415 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47569 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99599 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00249 * 179.97438 * 13 12 11 16 16 C 1.37100 * 120.00052 * 180.02562 * 15 13 12 17 17 H 1.07995 * 119.99659 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00012 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99936 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99873 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47125 * 90.00439 * 20 18 16 22 22 H 1.48500 * 109.46593 * 210.00213 * 20 18 16 23 23 H 1.48494 * 109.46935 * 329.99984 * 20 18 16 24 24 H 1.08998 * 109.47318 * 263.43172 * 1 2 3 25 25 H 1.09007 * 109.47197 * 23.43255 * 1 2 3 26 26 H 1.09003 * 109.46846 * 143.42715 * 1 2 3 27 27 H 1.07999 * 120.02949 * 359.95573 * 3 2 1 28 28 H 0.96997 * 120.00261 * 0.02562 * 5 4 3 29 29 H 0.96994 * 119.99827 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.90074 * 180.27214 * 6 4 3 31 31 H 1.07995 * 119.97680 * 179.76985 * 7 6 4 32 32 H 1.09000 * 109.46822 * 300.00431 * 12 11 9 33 33 H 1.09001 * 109.47246 * 59.99939 * 12 11 9 34 34 H 0.96997 * 119.99908 * 0.02562 * 15 13 12 35 35 H 0.97000 * 119.99729 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1908 0.0000 4 6 3.5897 1.1871 0.0005 5 7 4.2864 2.3900 0.0011 6 6 4.2857 -0.0188 0.0063 7 6 3.6070 -1.2039 0.0010 8 6 2.2084 -1.2100 0.0005 9 6 1.4754 -2.4886 0.0001 10 8 0.2656 -2.4953 0.1140 11 8 2.1468 -3.6501 -0.1266 12 6 1.3601 -4.8705 -0.1193 13 6 2.2746 -6.0587 -0.2698 14 8 3.4719 -5.8933 -0.3725 15 7 1.7624 -7.3052 -0.2892 16 6 2.5945 -8.3863 -0.4255 17 1 3.6604 -8.2389 -0.5178 18 6 2.0664 -9.6713 -0.4460 19 7 2.8640 -10.7074 -0.5772 20 14 0.2226 -9.9260 -0.2870 21 1 -0.3964 -9.9177 -1.6368 22 1 -0.0418 -11.2307 0.3709 23 1 -0.3594 -8.8320 0.5312 24 1 -0.3634 -0.1175 1.0209 25 1 -0.3634 0.9430 -0.4087 26 1 -0.3633 -0.8253 -0.6124 27 1 1.6593 2.1273 -0.0007 28 1 3.8025 3.2307 0.0015 29 1 5.2563 2.3887 0.0011 30 1 5.3657 -0.0170 0.0111 31 1 4.1506 -2.1371 0.0017 32 1 0.8173 -4.9472 0.8228 33 1 0.6507 -4.8505 -0.9467 34 1 0.8051 -7.4375 -0.2066 35 1 2.4953 -11.6045 -0.5911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044749288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:05 Heat of formation + Delta-G solvation = -115.931244 kcal Electronic energy + Delta-G solvation = -20504.503889 eV Core-core repulsion = 17080.599386 eV Total energy + Delta-G solvation = -3423.904503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74362 -40.47754 -39.82474 -37.50801 -36.08211 -35.74730 -33.86738 -33.38569 -30.85902 -29.66431 -28.11238 -26.42085 -24.30564 -22.98363 -21.67847 -21.53250 -20.49997 -19.06180 -18.17308 -17.70028 -17.60658 -17.51409 -17.30594 -16.75265 -15.86946 -15.66715 -15.31398 -15.00904 -14.75862 -14.67040 -14.22955 -14.11173 -13.86066 -13.78999 -13.47426 -13.33062 -13.06088 -12.98322 -12.46061 -12.00441 -11.96273 -11.79563 -11.58871 -11.53094 -11.13152 -10.59440 -10.34097 -9.82102 -8.59975 -8.46164 -6.09209 -0.10529 0.46511 1.30080 1.33682 1.41639 1.49459 1.59197 1.76265 2.20379 2.84267 2.85471 2.91215 3.08265 3.75756 3.81099 3.89753 4.00785 4.13111 4.16387 4.27572 4.48352 4.57183 4.82739 4.86229 4.98940 5.18243 5.23212 5.27991 5.43036 5.49838 5.68326 5.78612 5.85178 6.46147 6.47653 6.73372 6.79693 6.92124 7.25684 7.77718 8.70560 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036419 B = 0.003357 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.651071 B = 8337.709199 C = 9081.836602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.027 3.973 3 C -0.219 4.219 4 C 0.266 3.734 5 N -0.846 5.846 6 C -0.223 4.223 7 C -0.017 4.017 8 C -0.224 4.224 9 C 0.506 3.494 10 O -0.529 6.529 11 O -0.346 6.346 12 C 0.069 3.931 13 C 0.449 3.551 14 O -0.608 6.608 15 N -0.576 5.576 16 C -0.334 4.334 17 H 0.060 0.940 18 C -0.008 4.008 19 N -0.926 5.926 20 Si 0.962 3.038 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.232 1.232 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.158 0.842 28 H 0.414 0.586 29 H 0.412 0.588 30 H 0.147 0.853 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.393 0.607 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 27.666 1.874 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.026 3.974 3 C -0.242 4.242 4 C 0.155 3.845 5 N -0.383 5.383 6 C -0.245 4.245 7 C -0.036 4.036 8 C -0.227 4.227 9 C 0.355 3.645 10 O -0.421 6.421 11 O -0.262 6.262 12 C -0.008 4.008 13 C 0.236 3.764 14 O -0.493 6.493 15 N -0.218 5.218 16 C -0.462 4.462 17 H 0.079 0.921 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.156 1.156 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.176 0.824 28 H 0.245 0.755 29 H 0.243 0.757 30 H 0.164 0.836 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.229 0.771 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.211 27.530 1.821 28.078 hybrid contribution -0.358 -0.882 0.035 0.953 sum -5.568 26.648 1.855 27.287 Atomic orbital electron populations 1.21094 0.89528 1.03667 1.03388 1.19911 0.96941 0.90618 0.89962 1.20617 0.91977 0.98137 1.13455 1.18078 0.91542 0.87284 0.87625 1.42484 1.10130 1.04722 1.80995 1.20506 1.01032 0.90458 1.12501 1.21001 0.92586 0.99203 0.90821 1.18739 0.93919 0.89227 1.20819 1.21615 0.86018 0.84492 0.72394 1.90732 1.15300 1.87829 1.48232 1.86608 1.41416 1.14572 1.83615 1.22555 0.92138 0.80195 1.05922 1.20180 0.88954 0.84309 0.82920 1.90570 1.17866 1.85833 1.54982 1.41807 1.09180 1.04600 1.66210 1.19010 0.91937 0.84954 1.50318 0.92139 1.26090 1.05310 0.93733 0.95620 1.69783 1.38330 0.99592 1.48835 0.85410 0.76325 0.79888 0.80263 1.17878 1.19572 1.15558 0.90566 0.89473 0.90830 0.82431 0.75548 0.75736 0.83556 0.85887 0.86827 0.86707 0.77084 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.73 71.23 0.62 -1.86 16 2 C 0.03 0.61 5.91 -19.61 -0.12 0.50 16 3 C -0.22 -3.59 9.51 22.37 0.21 -3.38 16 4 C 0.27 4.06 6.75 38.49 0.26 4.32 16 5 N -0.85 -5.86 9.05 -51.37 -0.47 -6.33 16 6 C -0.22 -4.33 9.82 22.12 0.22 -4.11 16 7 C -0.02 -0.44 9.55 22.27 0.21 -0.23 16 8 C -0.22 -6.40 5.88 -20.08 -0.12 -6.52 16 9 C 0.51 17.12 7.82 70.23 0.55 17.67 16 10 O -0.53 -18.01 13.13 19.78 0.26 -17.75 16 11 O -0.35 -13.37 9.01 -50.29 -0.45 -13.83 16 12 C 0.07 2.53 5.95 71.23 0.42 2.95 16 13 C 0.45 21.69 7.86 87.66 0.69 22.38 16 14 O -0.61 -35.64 16.08 15.72 0.25 -35.39 16 15 N -0.58 -27.96 5.09 -306.99 -1.56 -29.53 16 16 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 17 H 0.06 4.23 7.39 -2.91 -0.02 4.20 16 18 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 19 N -0.93 -55.41 13.96 21.66 0.30 -55.11 16 20 Si 0.96 38.69 27.74 68.60 1.90 40.59 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.23 -7.96 6.52 99.48 0.65 -7.32 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 1.24 8.04 -2.38 -0.02 1.22 16 26 H 0.07 1.87 5.86 -2.39 -0.01 1.85 16 27 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.41 1.03 8.83 -92.71 -0.82 0.21 16 29 H 0.41 1.55 8.83 -92.71 -0.82 0.73 16 30 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.12 3.66 7.61 -2.91 -0.02 3.64 16 32 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.39 15.72 5.76 -92.71 -0.53 15.19 16 35 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -80.19 309.38 3.45 -76.75 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.06 Total: 27.66 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 4.27 Total: 12.93 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -1.73 Total: -90.96 kcal Atomic # 8 Polarization: -67.03 SS G_CDS: 0.06 Total: -66.97 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Total: -80.19 3.45 -76.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044749288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.186 kcal (2) G-P(sol) polarization free energy of solvation -80.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds