Wall clock time and date at job start Tue Mar 31 2020 00:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86805 * 120.00216 * 2 1 4 4 H 1.48501 * 109.46876 * 270.00002 * 3 2 1 5 5 H 1.48492 * 109.46945 * 29.99785 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99998 * 3 2 1 7 7 C 1.38766 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99868 * 180.02562 * 7 2 1 9 9 O 1.34884 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.34800 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21561 * 120.00115 * 0.02562 * 10 9 7 12 12 C 1.47213 * 120.00015 * 179.97438 * 10 9 7 13 13 C 1.38326 * 126.47577 * 0.02830 * 12 10 9 14 14 N 1.34244 * 108.38063 * 179.97438 * 13 12 10 15 15 H 0.96995 * 125.37993 * 179.97438 * 14 13 12 16 16 C 1.37795 * 109.23494 * 359.97438 * 14 13 12 17 17 C 1.46822 * 125.83180 * 179.97438 * 16 14 13 18 18 O 1.21675 * 119.99476 * 180.02562 * 17 16 14 19 19 N 1.34771 * 120.00261 * 0.02562 * 17 16 14 20 20 C 1.47021 * 125.64939 * 359.69877 * 19 17 16 21 21 C 1.54309 * 107.27888 * 180.96418 * 20 19 17 22 22 C 1.55154 * 102.86266 * 22.52351 * 21 20 19 23 23 C 1.47420 * 125.65007 * 179.97438 * 19 17 16 24 24 C 1.36322 * 108.32796 * 359.97438 * 16 14 13 25 25 H 0.97006 * 120.00229 * 359.97438 * 1 2 3 26 26 H 1.07996 * 125.81017 * 0.24171 * 13 12 10 27 27 H 1.09004 * 109.88355 * 300.51369 * 20 19 17 28 28 H 1.09006 * 109.88467 * 61.66864 * 20 19 17 29 29 H 1.08999 * 110.92428 * 264.10928 * 21 20 19 30 30 H 1.08999 * 110.59147 * 140.78363 * 21 20 19 31 31 H 1.09000 * 111.00653 * 206.22776 * 22 21 20 32 32 H 1.09001 * 111.03730 * 82.38941 * 22 21 20 33 33 H 1.08993 * 110.37441 * 274.68001 * 23 19 17 34 34 H 1.09004 * 110.36183 * 36.89541 * 23 19 17 35 35 H 1.08006 * 126.49141 * 179.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2018 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3337 -2.3699 0.0005 10 6 2.0679 -3.5004 0.0005 11 8 3.2819 -3.4368 0.0010 12 6 1.3996 -4.8121 0.0011 13 6 0.0352 -5.0398 0.0011 14 7 -0.1726 -6.3661 0.0012 15 1 -1.0408 -6.7985 0.0015 16 6 1.0425 -7.0159 0.0006 17 6 1.2390 -8.4710 0.0010 18 8 2.3648 -8.9327 0.0009 19 7 0.1726 -9.2950 0.0014 20 6 -1.2359 -8.8736 0.0079 21 6 -2.0972 -10.1538 0.0307 22 6 -1.1259 -11.2132 0.6152 23 6 0.2252 -10.7683 0.0013 24 6 2.0308 -6.0770 -0.0004 25 1 -0.4851 0.8401 0.0004 26 1 -0.7322 -4.2800 -0.0030 27 1 -1.4389 -8.2722 0.8940 28 1 -1.4548 -8.2978 -0.8914 29 1 -2.4095 -10.4308 -0.9762 30 1 -2.9617 -10.0226 0.6814 31 1 -1.3949 -12.2157 0.2823 32 1 -1.0974 -11.1597 1.7035 33 1 0.3216 -11.1445 -1.0171 34 1 1.0558 -11.1182 0.6144 35 1 3.0945 -6.2641 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048340655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:37 Heat of formation + Delta-G solvation = -57.445207 kcal Electronic energy + Delta-G solvation = -20797.129062 eV Core-core repulsion = 17375.760704 eV Total energy + Delta-G solvation = -3421.368358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44346 -39.65168 -38.45747 -37.50807 -34.97514 -32.30752 -32.05448 -31.07914 -29.79186 -28.96865 -25.54223 -24.52080 -22.83728 -21.69900 -21.33936 -20.17083 -19.25280 -17.84372 -17.60919 -16.91212 -16.39586 -15.89759 -15.23653 -14.76470 -14.37710 -14.28602 -14.23603 -13.98167 -13.88282 -13.51807 -13.18355 -12.92337 -12.64404 -12.40217 -11.93874 -11.79810 -11.67835 -11.53197 -11.26239 -11.17597 -10.41202 -10.36955 -10.20166 -9.75316 -9.06091 -9.00663 -8.77936 -8.51654 -8.08891 -6.37084 -4.00646 1.55387 2.30888 2.63492 3.13789 3.20340 3.23577 3.30009 3.34121 3.97412 4.02398 4.10011 4.29212 4.38699 4.55635 4.71994 4.82746 4.92938 4.99591 5.23422 5.24376 5.29824 5.36966 5.38881 5.47992 5.51178 5.67141 5.76828 5.98952 6.27740 6.68450 6.94619 7.09389 7.22262 7.40746 7.48255 8.01425 8.02430 8.82721 9.13498 9.96180 10.81749 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042600 B = 0.003392 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.117352 B = 8252.035605 C = 8863.244233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.373 4.373 8 H 0.096 0.904 9 O -0.214 6.214 10 C 0.470 3.530 11 O -0.554 6.554 12 C -0.187 4.187 13 C 0.088 3.912 14 N -0.540 5.540 15 H 0.416 0.584 16 C -0.080 4.080 17 C 0.611 3.389 18 O -0.527 6.527 19 N -0.626 5.626 20 C 0.085 3.915 21 C -0.129 4.129 22 C -0.134 4.134 23 C 0.107 3.893 24 C -0.041 4.041 25 H 0.268 0.732 26 H 0.192 0.808 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 -19.754 0.303 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.450 4.450 8 H 0.113 0.887 9 O -0.122 6.122 10 C 0.318 3.682 11 O -0.451 6.451 12 C -0.195 4.195 13 C -0.052 4.052 14 N -0.140 5.140 15 H 0.258 0.742 16 C -0.190 4.190 17 C 0.402 3.598 18 O -0.403 6.403 19 N -0.362 5.362 20 C -0.039 4.039 21 C -0.167 4.167 22 C -0.172 4.172 23 C -0.015 4.015 24 C -0.067 4.067 25 H 0.078 0.922 26 H 0.209 0.791 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.244 -19.899 0.303 21.944 hybrid contribution -0.166 0.745 -0.032 0.764 sum -9.410 -19.154 0.271 21.342 Atomic orbital electron populations 1.69977 1.05955 1.27521 1.47211 1.25296 0.95822 0.98740 0.96469 0.85679 0.79095 0.79799 0.78688 1.19950 1.20433 1.19081 1.21246 0.92485 0.79842 1.51379 0.88659 1.83910 1.39010 1.13118 1.76159 1.19901 0.85491 0.84457 0.78392 1.90642 1.15160 1.87860 1.51459 1.19084 0.92158 0.92082 1.16158 1.22836 0.98216 0.84266 0.99887 1.42328 1.08122 1.06742 1.56851 0.74212 1.19688 0.85529 0.91411 1.22363 1.16724 0.83339 0.83813 0.75877 1.90843 1.22417 1.76263 1.50787 1.48370 1.05522 1.07167 1.75124 1.22252 0.81700 0.98560 1.01352 1.22622 0.97864 0.93649 1.02586 1.22814 0.94035 0.99219 1.01165 1.22231 0.98551 0.79459 1.01305 1.21062 0.99037 0.89210 0.97399 0.92228 0.79118 0.91088 0.91075 0.90050 0.89560 0.89501 0.90362 0.91245 0.90014 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.15 13.67 55.48 0.76 -24.39 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.37 -11.18 9.65 30.93 0.30 -10.88 16 8 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 9 O -0.21 -6.19 9.57 -21.91 -0.21 -6.40 16 10 C 0.47 12.39 7.89 34.38 0.27 12.66 16 11 O -0.55 -16.02 16.17 -19.31 -0.31 -16.33 16 12 C -0.19 -3.90 6.13 -105.03 -0.64 -4.55 16 13 C 0.09 1.43 11.76 -16.46 -0.19 1.23 16 14 N -0.54 -6.95 5.53 -9.28 -0.05 -7.00 16 15 H 0.42 3.66 4.83 -40.82 -0.20 3.46 16 16 C -0.08 -1.27 6.83 -82.40 -0.56 -1.83 16 17 C 0.61 9.27 7.82 -12.79 -0.10 9.17 16 18 O -0.53 -9.76 17.11 5.21 0.09 -9.67 16 19 N -0.63 -6.79 3.33 -172.01 -0.57 -7.37 16 20 C 0.08 0.60 5.09 -3.07 -0.02 0.58 16 21 C -0.13 -0.59 6.95 -24.91 -0.17 -0.76 16 22 C -0.13 -0.70 7.08 -24.57 -0.17 -0.87 16 23 C 0.11 0.90 6.91 -2.52 -0.02 0.89 16 24 C -0.04 -0.78 10.37 -39.08 -0.41 -1.18 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.19 2.79 8.06 -52.49 -0.42 2.37 16 27 H 0.07 0.46 7.10 -51.93 -0.37 0.09 16 28 H 0.07 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 35 H 0.16 3.05 8.06 -52.48 -0.42 2.63 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -37.19 307.39 -6.31 -43.50 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.81 Total: 1.07 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.81 Total: 5.50 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.13 Total: -38.75 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.43 Total: -32.40 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.19 -6.31 -43.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048340655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.945 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds