Wall clock time and date at job start Tue Mar 31 2020 00:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86805 * 120.00216 * 2 1 4 4 H 1.48501 * 109.46876 * 270.00002 * 3 2 1 5 5 H 1.48492 * 109.46945 * 29.99785 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99998 * 3 2 1 7 7 C 1.38766 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99868 * 180.02562 * 7 2 1 9 9 O 1.34884 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.34800 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21561 * 120.00115 * 0.02562 * 10 9 7 12 12 C 1.47213 * 120.00015 * 179.97438 * 10 9 7 13 13 C 1.38326 * 126.47577 * 0.02830 * 12 10 9 14 14 N 1.34244 * 108.38063 * 179.97438 * 13 12 10 15 15 H 0.96995 * 125.37993 * 179.97438 * 14 13 12 16 16 C 1.37795 * 109.23494 * 359.97438 * 14 13 12 17 17 C 1.46822 * 125.83180 * 179.97438 * 16 14 13 18 18 O 1.21675 * 119.99476 * 180.02562 * 17 16 14 19 19 N 1.34771 * 120.00261 * 0.02562 * 17 16 14 20 20 C 1.47021 * 125.64939 * 359.69877 * 19 17 16 21 21 C 1.54309 * 107.27888 * 180.96418 * 20 19 17 22 22 C 1.55154 * 102.86266 * 22.52351 * 21 20 19 23 23 C 1.47420 * 125.65007 * 179.97438 * 19 17 16 24 24 C 1.36322 * 108.32796 * 359.97438 * 16 14 13 25 25 H 0.97006 * 120.00229 * 359.97438 * 1 2 3 26 26 H 1.07996 * 125.81017 * 0.24171 * 13 12 10 27 27 H 1.09004 * 109.88355 * 300.51369 * 20 19 17 28 28 H 1.09006 * 109.88467 * 61.66864 * 20 19 17 29 29 H 1.08999 * 110.92428 * 264.10928 * 21 20 19 30 30 H 1.08999 * 110.59147 * 140.78363 * 21 20 19 31 31 H 1.09000 * 111.00653 * 206.22776 * 22 21 20 32 32 H 1.09001 * 111.03730 * 82.38941 * 22 21 20 33 33 H 1.08993 * 110.37441 * 274.68001 * 23 19 17 34 34 H 1.09004 * 110.36183 * 36.89541 * 23 19 17 35 35 H 1.08006 * 126.49141 * 179.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2018 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3337 -2.3699 0.0005 10 6 2.0679 -3.5004 0.0005 11 8 3.2819 -3.4368 0.0010 12 6 1.3996 -4.8121 0.0011 13 6 0.0352 -5.0398 0.0011 14 7 -0.1726 -6.3661 0.0012 15 1 -1.0408 -6.7985 0.0015 16 6 1.0425 -7.0159 0.0006 17 6 1.2390 -8.4710 0.0010 18 8 2.3648 -8.9327 0.0009 19 7 0.1726 -9.2950 0.0014 20 6 -1.2359 -8.8736 0.0079 21 6 -2.0972 -10.1538 0.0307 22 6 -1.1259 -11.2132 0.6152 23 6 0.2252 -10.7683 0.0013 24 6 2.0308 -6.0770 -0.0004 25 1 -0.4851 0.8401 0.0004 26 1 -0.7322 -4.2800 -0.0030 27 1 -1.4389 -8.2722 0.8940 28 1 -1.4548 -8.2978 -0.8914 29 1 -2.4095 -10.4308 -0.9762 30 1 -2.9617 -10.0226 0.6814 31 1 -1.3949 -12.2157 0.2823 32 1 -1.0974 -11.1597 1.7035 33 1 0.3216 -11.1445 -1.0171 34 1 1.0558 -11.1182 0.6144 35 1 3.0945 -6.2641 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048340655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:37 Heat of formation + Delta-G solvation = -83.662764 kcal Electronic energy + Delta-G solvation = -20798.265941 eV Core-core repulsion = 17375.760704 eV Total energy + Delta-G solvation = -3422.505237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.77091 -40.89287 -40.32977 -38.48230 -37.13366 -34.26421 -33.25254 -32.36796 -30.82789 -29.93194 -27.59322 -25.54450 -24.51839 -22.58167 -22.15375 -21.42412 -20.88738 -19.80608 -19.07350 -17.97349 -17.62141 -17.34656 -16.61300 -16.40912 -16.16187 -16.10566 -15.64481 -14.89084 -14.80064 -14.59237 -14.36614 -14.15988 -13.90084 -13.58174 -13.49180 -13.31978 -13.15042 -12.38366 -12.27386 -12.17526 -12.14791 -11.98216 -11.63716 -11.44476 -11.15054 -10.65773 -10.31723 -9.94826 -9.45792 -8.51631 -6.27694 0.25618 0.63129 1.37130 1.44084 1.53503 1.64232 1.93445 2.02980 2.18667 2.39931 2.87363 3.06174 3.36873 3.54845 3.76112 3.93204 3.98589 4.11532 4.18990 4.32014 4.38446 4.49638 4.77335 4.78354 4.89296 4.93197 4.99802 5.09938 5.17198 5.20101 5.32348 5.40637 5.52715 5.86950 6.19372 6.27411 6.69624 6.86687 6.94532 7.81053 8.69149 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042600 B = 0.003392 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.117352 B = 8252.035605 C = 8863.244233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.001 3.999 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.268 1.268 7 C -0.420 4.420 8 H 0.076 0.924 9 O -0.232 6.232 10 C 0.468 3.532 11 O -0.594 6.594 12 C -0.234 4.234 13 C 0.125 3.875 14 N -0.502 5.502 15 H 0.440 0.560 16 C -0.058 4.058 17 C 0.606 3.394 18 O -0.571 6.571 19 N -0.618 5.618 20 C 0.066 3.934 21 C -0.119 4.119 22 C -0.125 4.125 23 C 0.095 3.905 24 C -0.068 4.068 25 H 0.279 0.721 26 H 0.215 0.785 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 -20.616 0.272 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.200 4.200 3 Si 0.834 3.166 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.193 1.193 7 C -0.496 4.496 8 H 0.094 0.906 9 O -0.140 6.140 10 C 0.318 3.682 11 O -0.493 6.493 12 C -0.241 4.241 13 C -0.019 4.019 14 N -0.105 5.105 15 H 0.288 0.712 16 C -0.169 4.169 17 C 0.396 3.604 18 O -0.451 6.451 19 N -0.351 5.351 20 C -0.056 4.056 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.026 4.026 24 C -0.094 4.094 25 H 0.089 0.911 26 H 0.232 0.768 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.526 -20.833 0.271 24.310 hybrid contribution 0.724 0.806 -0.027 1.084 sum -11.802 -20.027 0.244 23.247 Atomic orbital electron populations 1.70031 1.07293 1.29340 1.46742 1.26420 0.96966 1.01845 0.94758 0.84670 0.77680 0.74799 0.79488 1.18524 1.18059 1.19255 1.21399 0.92151 0.81236 1.54784 0.90610 1.83911 1.39379 1.13554 1.77140 1.20837 0.85399 0.85605 0.76338 1.90588 1.17016 1.88545 1.53183 1.18827 0.94454 0.89766 1.21034 1.22915 0.96501 0.85643 0.96794 1.42231 1.08535 1.05465 1.54229 0.71156 1.19625 0.85526 0.91686 1.20085 1.16621 0.83817 0.83683 0.76257 1.90822 1.24465 1.76730 1.53072 1.48451 1.06203 1.08039 1.72456 1.22684 0.79636 1.00687 1.02546 1.22659 0.97639 0.91452 1.03919 1.22814 0.91772 1.00619 1.01038 1.22512 1.00332 0.77888 1.01895 1.20951 0.99153 0.89686 0.99577 0.91112 0.76842 0.89867 0.89739 0.88770 0.87247 0.87205 0.90335 0.90527 0.91684 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.83 13.67 21.63 0.30 -51.53 16 2 C 0.00 0.04 5.49 84.88 0.47 0.50 16 3 Si 1.01 43.91 29.55 68.60 2.03 45.94 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.42 -26.18 9.65 67.95 0.66 -25.52 16 8 H 0.08 4.89 6.86 -2.91 -0.02 4.87 16 9 O -0.23 -13.95 9.57 10.34 0.10 -13.85 16 10 C 0.47 26.05 7.89 70.18 0.55 26.60 16 11 O -0.59 -36.73 16.17 19.64 0.32 -36.41 16 12 C -0.23 -10.02 6.13 -20.13 -0.12 -10.14 16 13 C 0.13 3.85 11.76 84.35 0.99 4.84 16 14 N -0.50 -11.64 5.53 -183.27 -1.01 -12.65 16 15 H 0.44 5.91 4.83 -92.71 -0.45 5.46 16 16 C -0.06 -1.81 6.83 40.01 0.27 -1.53 16 17 C 0.61 18.09 7.82 86.49 0.68 18.77 16 18 O -0.57 -21.78 17.11 -4.27 -0.07 -21.85 16 19 N -0.62 -12.12 3.33 -816.33 -2.72 -14.83 16 20 C 0.07 0.67 5.09 86.72 0.44 1.11 16 21 C -0.12 -0.51 6.95 31.78 0.22 -0.29 16 22 C -0.12 -0.83 7.08 31.99 0.23 -0.60 16 23 C 0.10 1.43 6.91 86.86 0.60 2.03 16 24 C -0.07 -2.70 10.37 22.59 0.23 -2.46 16 25 H 0.28 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.22 5.72 8.06 -2.91 -0.02 5.69 16 27 H 0.08 0.68 7.10 -2.38 -0.02 0.67 16 28 H 0.08 0.68 7.20 -2.38 -0.02 0.66 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.21 8.03 -2.39 -0.02 1.19 16 35 H 0.14 5.84 8.06 -2.91 -0.02 5.82 16 Total: -1.00 -86.71 307.39 4.84 -81.87 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.69 Total: 10.02 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.22 Total: 13.31 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -3.43 Total: -79.02 kcal Atomic # 8 Polarization: -72.45 SS G_CDS: 0.34 Total: -72.11 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -86.71 4.84 -81.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048340655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.794 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds