Wall clock time and date at job start Tue Mar 31 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.92619 * 2 1 4 4 C 1.38339 * 120.29029 * 179.74401 * 3 2 1 5 5 C 1.37977 * 120.14534 * 0.28089 * 4 3 2 6 6 C 1.39557 * 119.85180 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.14123 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99895 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00216 * 359.97438 * 7 6 5 10 10 C 1.46506 * 119.99899 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47346 * 325.00340 * 10 9 7 12 12 C 1.52997 * 109.46890 * 85.00503 * 10 9 7 13 13 C 1.50695 * 109.47010 * 205.00133 * 10 9 7 14 14 H 1.08002 * 120.00385 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00071 * 180.02562 * 13 10 9 16 16 N 1.31523 * 120.00357 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99888 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47134 * 90.00020 * 17 15 13 19 19 H 1.48499 * 109.47348 * 210.00099 * 17 15 13 20 20 H 1.48498 * 109.47315 * 330.00170 * 17 15 13 21 21 C 1.37940 * 119.92706 * 180.25986 * 2 1 3 22 22 N 1.48009 * 120.07414 * 359.97438 * 21 2 1 23 23 O 1.21811 * 119.99657 * 270.25388 * 22 21 2 24 24 O 1.21799 * 120.00477 * 90.24961 * 22 21 2 25 25 H 1.09006 * 109.46709 * 89.99140 * 1 2 3 26 26 H 1.08997 * 109.47158 * 209.99096 * 1 2 3 27 27 H 1.09000 * 109.46935 * 330.00187 * 1 2 3 28 28 H 1.08002 * 119.85782 * 0.02962 * 3 2 1 29 29 H 1.08001 * 119.92779 * 180.26070 * 4 3 2 30 30 H 1.08007 * 120.07464 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00008 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.47259 * 59.99783 * 12 10 9 33 33 H 1.09002 * 109.47286 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.47220 * 300.00170 * 12 10 9 35 35 H 0.96991 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0053 5 6 4.2812 0.0194 0.0048 6 6 3.5911 -1.1936 -0.0005 7 6 4.3352 -2.4711 -0.0016 8 8 3.7315 -3.5261 -0.0068 9 7 5.6830 -2.4660 0.0020 10 6 6.4203 -3.7320 0.0014 11 1 5.8742 -4.4708 0.5879 12 6 6.5723 -4.2330 -1.4362 13 6 7.7842 -3.5192 0.6060 14 1 8.0728 -2.5391 0.9561 15 6 8.6637 -4.5757 0.7123 16 7 9.8538 -4.3901 1.2404 17 14 8.1648 -6.2707 0.1062 18 1 8.5477 -6.4186 -1.3210 19 1 8.8551 -7.3082 0.9139 20 1 6.6951 -6.4329 0.2438 21 6 2.1952 -1.1955 -0.0054 22 7 1.4552 -2.4773 -0.0107 23 8 1.1470 -3.0069 1.0421 24 8 1.1542 -3.0025 -1.0676 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6539 2.1326 0.0005 29 1 4.1136 2.1475 0.0096 30 1 5.3613 0.0276 0.0086 31 1 6.1648 -1.6241 0.0057 32 1 7.1184 -3.4941 -2.0226 33 1 7.1213 -5.1746 -1.4367 34 1 5.5858 -4.3868 -1.8735 35 1 10.4726 -5.1333 1.3148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050335991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:45 Heat of formation + Delta-G solvation = -5.598189 kcal Electronic energy + Delta-G solvation = -21667.032055 eV Core-core repulsion = 18247.911953 eV Total energy + Delta-G solvation = -3419.120103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.03628 -40.10888 -38.69401 -36.13812 -35.29815 -33.78565 -32.49519 -32.09622 -30.06548 -27.84905 -26.26831 -25.29429 -24.12979 -22.03796 -21.39702 -19.90956 -19.09136 -18.46047 -17.90952 -17.42585 -16.40439 -15.82587 -15.55283 -15.18157 -14.83119 -14.77572 -14.18333 -14.11619 -13.24806 -13.08217 -13.03825 -12.55703 -12.49646 -12.28821 -12.08038 -11.92346 -11.41619 -11.32733 -10.89621 -10.83710 -10.74949 -10.26751 -9.91886 -9.75587 -9.52698 -9.42782 -9.34081 -8.86084 -8.39898 -6.28758 -4.32885 0.19232 0.49315 0.85864 1.53573 2.61843 3.19900 3.32488 3.34312 3.39097 3.45409 4.01107 4.21025 4.26098 4.43629 4.58029 4.62694 4.83588 5.04488 5.05355 5.06172 5.13899 5.49655 5.52035 5.63187 5.74316 6.02670 6.21103 6.27327 6.44283 6.58986 6.74945 6.96978 7.09028 7.36968 7.87530 7.89598 8.31337 8.49143 8.68587 9.30777 10.82997 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.005079 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.746855 B = 5511.602243 C = 6241.062389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.095 4.095 4 C -0.086 4.086 5 C -0.083 4.083 6 C -0.074 4.074 7 C 0.532 3.468 8 O -0.534 6.534 9 N -0.681 5.681 10 C 0.236 3.764 11 H 0.053 0.947 12 C -0.162 4.162 13 C -0.539 4.539 14 H 0.081 0.919 15 C 0.081 3.919 16 N -0.889 5.889 17 Si 0.884 3.116 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.261 1.261 21 C 0.019 3.981 22 N 0.037 4.963 23 O -0.137 6.137 24 O -0.136 6.136 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.396 0.604 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.227 14.686 -3.596 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.049 4.049 3 C -0.114 4.114 4 C -0.104 4.104 5 C -0.102 4.102 6 C -0.079 4.079 7 C 0.316 3.684 8 O -0.413 6.413 9 N -0.329 5.329 10 C 0.133 3.867 11 H 0.071 0.929 12 C -0.220 4.220 13 C -0.577 4.577 14 H 0.099 0.901 15 C -0.123 4.123 16 N -0.526 5.526 17 Si 0.714 3.286 18 H -0.201 1.201 19 H -0.219 1.219 20 H -0.186 1.186 21 C -0.063 4.063 22 N 0.568 4.432 23 O -0.360 6.360 24 O -0.360 6.360 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.231 0.769 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.025 14.479 -3.530 20.465 hybrid contribution 0.154 -0.790 -0.306 0.861 sum -13.871 13.689 -3.836 19.862 Atomic orbital electron populations 1.21016 0.89152 1.04513 1.04018 1.19580 0.97365 0.90278 0.97711 1.21206 0.94392 0.96803 0.98952 1.21443 0.94084 0.98798 0.96040 1.21486 1.01263 0.90261 0.97233 1.20136 0.90567 0.96440 1.00733 1.18094 0.83832 0.87531 0.78957 1.90876 1.68310 1.31671 1.50430 1.46118 1.04188 1.11905 1.70704 1.19251 0.92455 0.81539 0.93428 0.92915 1.22454 0.99607 1.00710 0.99257 1.20952 0.96349 0.98472 1.41953 0.90122 1.24800 0.94471 0.98884 0.94130 1.69854 1.06650 1.32525 1.43532 0.86887 0.79698 0.83739 0.78324 1.20144 1.21921 1.18555 1.20792 0.91314 0.84286 1.09903 1.43076 0.98453 1.01192 1.00498 1.94537 1.56281 1.64175 1.21029 1.94522 1.56495 1.64483 1.20483 0.89382 0.91053 0.89369 0.83455 0.83451 0.83043 0.76886 0.92659 0.93058 0.94340 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.76 36.01 0.35 -0.78 16 2 C -0.05 -0.53 5.87 -104.68 -0.61 -1.14 16 3 C -0.09 -0.73 9.69 -39.49 -0.38 -1.11 16 4 C -0.09 -0.66 10.03 -39.64 -0.40 -1.06 16 5 C -0.08 -0.90 9.54 -39.19 -0.37 -1.28 16 6 C -0.07 -1.16 5.87 -104.97 -0.62 -1.78 16 7 C 0.53 10.69 7.74 -12.33 -0.10 10.60 16 8 O -0.53 -12.94 14.11 -14.04 -0.20 -13.14 16 9 N -0.68 -13.52 5.02 -55.88 -0.28 -13.80 16 10 C 0.24 5.64 2.15 -69.08 -0.15 5.50 16 11 H 0.05 1.41 6.64 -51.93 -0.34 1.06 16 12 C -0.16 -3.65 8.96 37.16 0.33 -3.32 16 13 C -0.54 -14.35 9.31 -34.44 -0.32 -14.67 16 14 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 15 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 16 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 17 Si 0.88 21.75 24.37 -169.99 -4.14 17.61 16 18 H -0.27 -6.52 6.87 56.52 0.39 -6.13 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 21 C 0.02 0.29 6.12 -79.56 -0.49 -0.20 16 22 N 0.04 0.69 1.49 34.15 0.05 0.74 16 23 O -0.14 -2.72 18.79 -33.21 -0.62 -3.34 16 24 O -0.14 -2.66 18.92 -33.23 -0.63 -3.29 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.75 7.31 -51.93 -0.38 0.37 16 27 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 29 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.15 1.37 6.41 -52.48 -0.34 1.04 16 31 H 0.40 6.55 6.57 -40.82 -0.27 6.28 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -34.47 302.78 -6.97 -41.44 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.63 Total: 1.47 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.85 Total: -7.07 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.54 Total: -38.25 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.45 Total: -19.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.47 -6.97 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050335991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.844 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds