Wall clock time and date at job start Tue Mar 31 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.92619 * 2 1 4 4 C 1.38339 * 120.29029 * 179.74401 * 3 2 1 5 5 C 1.37977 * 120.14534 * 0.28089 * 4 3 2 6 6 C 1.39557 * 119.85180 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.14123 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99895 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00216 * 359.97438 * 7 6 5 10 10 C 1.46506 * 119.99899 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47346 * 325.00340 * 10 9 7 12 12 C 1.52997 * 109.46890 * 85.00503 * 10 9 7 13 13 C 1.50695 * 109.47010 * 205.00133 * 10 9 7 14 14 H 1.08002 * 120.00385 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00071 * 180.02562 * 13 10 9 16 16 N 1.31523 * 120.00357 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99888 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47134 * 90.00020 * 17 15 13 19 19 H 1.48499 * 109.47348 * 210.00099 * 17 15 13 20 20 H 1.48498 * 109.47315 * 330.00170 * 17 15 13 21 21 C 1.37940 * 119.92706 * 180.25986 * 2 1 3 22 22 N 1.48009 * 120.07414 * 359.97438 * 21 2 1 23 23 O 1.21811 * 119.99657 * 270.25388 * 22 21 2 24 24 O 1.21799 * 120.00477 * 90.24961 * 22 21 2 25 25 H 1.09006 * 109.46709 * 89.99140 * 1 2 3 26 26 H 1.08997 * 109.47158 * 209.99096 * 1 2 3 27 27 H 1.09000 * 109.46935 * 330.00187 * 1 2 3 28 28 H 1.08002 * 119.85782 * 0.02962 * 3 2 1 29 29 H 1.08001 * 119.92779 * 180.26070 * 4 3 2 30 30 H 1.08007 * 120.07464 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00008 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.47259 * 59.99783 * 12 10 9 33 33 H 1.09002 * 109.47286 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.47220 * 300.00170 * 12 10 9 35 35 H 0.96991 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0053 5 6 4.2812 0.0194 0.0048 6 6 3.5911 -1.1936 -0.0005 7 6 4.3352 -2.4711 -0.0016 8 8 3.7315 -3.5261 -0.0068 9 7 5.6830 -2.4660 0.0020 10 6 6.4203 -3.7320 0.0014 11 1 5.8742 -4.4708 0.5879 12 6 6.5723 -4.2330 -1.4362 13 6 7.7842 -3.5192 0.6060 14 1 8.0728 -2.5391 0.9561 15 6 8.6637 -4.5757 0.7123 16 7 9.8538 -4.3901 1.2404 17 14 8.1648 -6.2707 0.1062 18 1 8.5477 -6.4186 -1.3210 19 1 8.8551 -7.3082 0.9139 20 1 6.6951 -6.4329 0.2438 21 6 2.1952 -1.1955 -0.0054 22 7 1.4552 -2.4773 -0.0107 23 8 1.1470 -3.0069 1.0421 24 8 1.1542 -3.0025 -1.0676 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6539 2.1326 0.0005 29 1 4.1136 2.1475 0.0096 30 1 5.3613 0.0276 0.0086 31 1 6.1648 -1.6241 0.0057 32 1 7.1184 -3.4941 -2.0226 33 1 7.1213 -5.1746 -1.4367 34 1 5.5858 -4.3868 -1.8735 35 1 10.4726 -5.1333 1.3148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050335991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:45 Heat of formation + Delta-G solvation = -28.997037 kcal Electronic energy + Delta-G solvation = -21668.046706 eV Core-core repulsion = 18247.911953 eV Total energy + Delta-G solvation = -3420.134753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.33078 -41.40115 -39.93875 -37.56522 -37.12544 -34.93083 -34.20909 -33.16791 -31.77081 -28.80563 -27.37942 -27.27085 -25.38912 -23.07934 -22.96383 -21.53349 -20.27276 -19.86201 -19.42349 -18.62397 -18.18414 -17.50823 -16.76749 -16.34435 -16.16810 -15.99345 -15.50896 -15.15824 -14.94709 -14.63950 -14.24043 -13.86920 -13.72170 -13.47879 -13.27298 -13.22573 -12.89520 -12.86094 -12.79523 -12.25293 -12.23687 -12.16685 -11.74191 -11.40674 -11.26666 -10.94437 -10.63381 -10.34299 -10.08466 -8.45007 -6.51474 -0.79433 -0.60604 -0.31274 0.36489 1.21871 1.31660 1.40398 1.51216 1.94818 2.20281 2.30267 2.91052 3.15846 3.26471 3.55075 3.71729 3.86683 4.04044 4.14734 4.32755 4.41999 4.43279 4.51688 4.56249 4.72532 4.85799 4.87648 4.96687 5.00229 5.13973 5.16946 5.25218 5.40040 5.47097 6.00144 6.37882 6.43430 6.53991 6.96479 7.17990 8.69605 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.005079 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.746855 B = 5511.602243 C = 6241.062389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C -0.066 4.066 4 C -0.064 4.064 5 C -0.076 4.076 6 C -0.111 4.111 7 C 0.528 3.472 8 O -0.588 6.588 9 N -0.677 5.677 10 C 0.241 3.759 11 H 0.019 0.981 12 C -0.155 4.155 13 C -0.535 4.535 14 H 0.066 0.934 15 C 0.038 3.962 16 N -0.926 5.926 17 Si 0.931 3.069 18 H -0.256 1.256 19 H -0.289 1.289 20 H -0.272 1.272 21 C -0.014 4.014 22 N 0.041 4.959 23 O -0.175 6.175 24 O -0.160 6.160 25 H 0.098 0.902 26 H 0.042 0.958 27 H 0.128 0.872 28 H 0.202 0.798 29 H 0.200 0.800 30 H 0.168 0.832 31 H 0.413 0.587 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.757 18.662 -4.456 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.051 4.051 3 C -0.084 4.084 4 C -0.081 4.081 5 C -0.095 4.095 6 C -0.115 4.115 7 C 0.315 3.685 8 O -0.470 6.470 9 N -0.326 5.326 10 C 0.137 3.863 11 H 0.036 0.964 12 C -0.213 4.213 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.163 4.163 16 N -0.564 5.564 17 Si 0.759 3.241 18 H -0.181 1.181 19 H -0.216 1.216 20 H -0.197 1.197 21 C -0.095 4.095 22 N 0.567 4.433 23 O -0.394 6.394 24 O -0.383 6.383 25 H 0.116 0.884 26 H 0.061 0.939 27 H 0.146 0.854 28 H 0.219 0.781 29 H 0.218 0.782 30 H 0.185 0.815 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.554 18.482 -4.381 23.929 hybrid contribution 0.282 -1.800 -0.011 1.822 sum -14.272 16.682 -4.392 22.389 Atomic orbital electron populations 1.21132 0.87746 1.05072 1.04823 1.20091 0.98589 0.89608 0.96857 1.21907 0.94658 0.97058 0.94792 1.22065 0.94257 0.99190 0.92567 1.21816 1.02165 0.89627 0.95926 1.19830 0.90345 0.95597 1.05746 1.18798 0.83556 0.88926 0.77206 1.90837 1.69213 1.34266 1.52696 1.45833 1.04469 1.11253 1.71018 1.18879 0.90929 0.82790 0.93714 0.96357 1.22344 0.99843 1.00843 0.98296 1.21126 0.97183 0.97758 1.41186 0.91594 1.25424 0.94510 1.01865 0.94493 1.69935 1.07676 1.33645 1.45126 0.86122 0.78585 0.80419 0.78976 1.18139 1.21557 1.19727 1.21127 0.91310 0.83348 1.13731 1.43616 0.97778 1.02229 0.99653 1.94498 1.57720 1.65789 1.21351 1.94470 1.57276 1.65856 1.20706 0.88400 0.93897 0.85374 0.78065 0.78249 0.81488 0.74947 0.90815 0.93689 0.94241 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.76 71.24 0.70 -1.23 16 2 C -0.05 -0.94 5.87 -19.90 -0.12 -1.06 16 3 C -0.07 -0.59 9.69 22.33 0.22 -0.37 16 4 C -0.06 -0.57 10.03 22.23 0.22 -0.34 16 5 C -0.08 -1.40 9.54 22.53 0.21 -1.18 16 6 C -0.11 -3.40 5.87 -20.09 -0.12 -3.51 16 7 C 0.53 21.90 7.74 86.79 0.67 22.57 16 8 O -0.59 -30.19 14.11 14.62 0.21 -29.99 16 9 N -0.68 -27.19 5.02 -448.98 -2.25 -29.44 16 10 C 0.24 11.77 2.15 44.24 0.10 11.87 16 11 H 0.02 1.03 6.64 -2.39 -0.02 1.02 16 12 C -0.16 -6.98 8.96 71.98 0.65 -6.34 16 13 C -0.53 -28.81 9.31 25.60 0.24 -28.57 16 14 H 0.07 3.68 7.98 -2.91 -0.02 3.65 16 15 C 0.04 2.13 5.45 84.65 0.46 2.59 16 16 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 17 Si 0.93 45.27 24.37 68.60 1.67 46.94 16 18 H -0.26 -11.60 6.87 99.48 0.68 -10.91 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.27 -13.63 6.53 99.48 0.65 -12.98 16 21 C -0.01 -0.43 6.12 36.63 0.22 -0.21 16 22 N 0.04 1.61 1.49 -45.86 -0.07 1.55 16 23 O -0.17 -7.46 18.79 22.45 0.42 -7.04 16 24 O -0.16 -6.64 18.92 22.49 0.43 -6.21 16 25 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.04 0.89 7.31 -2.39 -0.02 0.87 16 27 H 0.13 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.20 -0.22 8.06 -2.91 -0.02 -0.25 16 29 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 30 H 0.17 2.44 6.41 -2.91 -0.02 2.42 16 31 H 0.41 13.39 6.57 -92.71 -0.61 12.78 16 32 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.04 2.06 3.27 -2.39 -0.01 2.05 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -82.33 302.78 4.61 -77.73 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.45 Total: 6.46 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 3.45 Total: -5.78 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.02 Total: -82.11 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: 1.05 Total: -43.24 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -82.33 4.61 -77.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050335991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.729 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds