Wall clock time and date at job start Tue Mar 31 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.92606 * 2 1 4 4 C 1.38339 * 120.29029 * 179.72208 * 3 2 1 5 5 C 1.37977 * 120.14553 * 0.25688 * 4 3 2 6 6 C 1.39549 * 119.85362 * 0.02562 * 5 4 3 7 7 C 1.47845 * 120.14658 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00229 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99827 * 359.97438 * 7 6 5 10 10 C 1.46505 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47464 * 34.99784 * 10 9 7 12 12 C 1.53002 * 109.47039 * 274.99793 * 10 9 7 13 13 C 1.50700 * 109.47135 * 154.99790 * 10 9 7 14 14 H 1.08001 * 119.99623 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99872 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00407 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99695 * 180.02562 * 15 13 10 18 18 H 1.48509 * 109.46952 * 90.00550 * 17 15 13 19 19 H 1.48503 * 109.47053 * 210.00043 * 17 15 13 20 20 H 1.48495 * 109.47443 * 330.00321 * 17 15 13 21 21 C 1.37940 * 119.92727 * 180.23798 * 2 1 3 22 22 N 1.48009 * 120.07420 * 0.02562 * 21 2 1 23 23 O 1.21801 * 120.00047 * 270.26019 * 22 21 2 24 24 O 1.21802 * 120.00329 * 90.25593 * 22 21 2 25 25 H 1.08998 * 109.46772 * 89.99371 * 1 2 3 26 26 H 1.08996 * 109.47365 * 209.99511 * 1 2 3 27 27 H 1.08998 * 109.46875 * 330.00082 * 1 2 3 28 28 H 1.08002 * 119.85782 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.92779 * 180.28518 * 4 3 2 30 30 H 1.08007 * 120.07468 * 180.02562 * 5 4 3 31 31 H 0.96998 * 120.00062 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.46985 * 300.00284 * 12 10 9 33 33 H 1.09001 * 109.46987 * 60.00446 * 12 10 9 34 34 H 1.09001 * 109.46944 * 180.02562 * 12 10 9 35 35 H 0.97000 * 120.00161 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0058 5 6 4.2812 0.0194 0.0063 6 6 3.5912 -1.1935 0.0003 7 6 4.3353 -2.4711 0.0014 8 8 3.7315 -3.5261 -0.0033 9 7 5.6830 -2.4659 0.0075 10 6 6.4203 -3.7319 0.0080 11 1 5.8785 -4.4683 -0.5856 12 6 6.5619 -4.2392 1.4445 13 6 7.7886 -3.5166 -0.5858 14 1 8.0799 -2.5348 -0.9288 15 6 8.6688 -4.5726 -0.6902 16 7 8.3142 -5.7680 -0.2721 17 14 10.3650 -4.3055 -1.4255 18 1 11.3196 -3.9397 -0.3483 19 1 10.8202 -5.5548 -2.0869 20 1 10.3040 -3.2097 -2.4259 21 6 2.1952 -1.1955 -0.0050 22 7 1.4552 -2.4773 -0.0109 23 8 1.1461 -3.0069 1.0415 24 8 1.1551 -3.0025 -1.0681 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6538 2.1326 0.0004 29 1 4.1136 2.1475 0.0104 30 1 5.3613 0.0276 0.0112 31 1 6.1648 -1.6241 0.0117 32 1 7.1037 -3.5028 2.0381 33 1 5.5722 -4.3950 1.8740 34 1 7.1109 -5.1808 1.4449 35 1 8.9333 -6.5111 -0.3459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050335994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:50 Heat of formation + Delta-G solvation = -35.866065 kcal Electronic energy + Delta-G solvation = -21590.771810 eV Core-core repulsion = 18170.339194 eV Total energy + Delta-G solvation = -3420.432616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -43.32024 -41.33771 -39.87890 -37.56324 -36.98334 -34.92878 -34.08943 -33.10167 -31.05594 -28.73334 -27.44855 -27.30024 -25.31186 -23.05394 -22.95103 -21.44537 -20.27811 -19.85870 -19.31183 -18.61369 -17.83134 -17.37251 -16.59981 -16.29309 -16.19036 -15.93762 -15.46766 -15.04060 -14.71957 -14.48189 -13.86755 -13.75633 -13.38142 -13.24790 -13.09032 -12.96887 -12.85932 -12.79645 -12.77955 -12.37434 -12.25232 -12.18867 -12.15600 -11.27150 -11.19195 -10.68483 -10.61286 -10.29829 -9.97463 -8.22921 -6.42686 -0.77100 -0.60617 -0.30161 0.38281 1.43501 1.45312 1.55704 1.57075 2.03567 2.32900 2.41013 3.07977 3.17112 3.33608 3.57076 3.73206 3.87720 4.04976 4.18864 4.42042 4.52020 4.62499 4.73947 4.79172 4.86802 4.95522 4.97275 5.00721 5.15106 5.25965 5.41246 5.48481 5.54885 5.74651 5.97218 6.37597 6.56282 6.64667 7.10687 7.31810 8.84044 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.004718 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.898496 B = 5933.837003 C = 6618.391971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C -0.067 4.067 4 C -0.062 4.062 5 C -0.076 4.076 6 C -0.111 4.111 7 C 0.522 3.478 8 O -0.593 6.593 9 N -0.680 5.680 10 C 0.270 3.730 11 H -0.005 1.005 12 C -0.133 4.133 13 C -0.549 4.549 14 H 0.081 0.919 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.980 3.020 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.260 1.260 21 C -0.016 4.016 22 N 0.042 4.958 23 O -0.169 6.169 24 O -0.169 6.169 25 H 0.096 0.904 26 H 0.041 0.959 27 H 0.129 0.871 28 H 0.203 0.797 29 H 0.203 0.797 30 H 0.169 0.831 31 H 0.410 0.590 32 H 0.047 0.953 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 22.819 0.898 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.052 4.052 3 C -0.085 4.085 4 C -0.079 4.079 5 C -0.096 4.096 6 C -0.115 4.115 7 C 0.308 3.692 8 O -0.476 6.476 9 N -0.329 5.329 10 C 0.167 3.833 11 H 0.013 0.987 12 C -0.192 4.192 13 C -0.587 4.587 14 H 0.099 0.901 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.804 3.196 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.184 1.184 21 C -0.097 4.097 22 N 0.567 4.433 23 O -0.390 6.390 24 O -0.390 6.390 25 H 0.115 0.885 26 H 0.060 0.940 27 H 0.148 0.852 28 H 0.220 0.780 29 H 0.220 0.780 30 H 0.187 0.813 31 H 0.248 0.752 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.089 0.911 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.986 22.527 0.917 24.270 hybrid contribution 0.735 -1.386 -0.257 1.590 sum -8.251 21.141 0.660 22.703 Atomic orbital electron populations 1.21129 0.87779 1.05087 1.04763 1.20099 0.98582 0.89587 0.96901 1.21911 0.94722 0.96963 0.94924 1.22077 0.94206 0.99159 0.92494 1.21818 1.02210 0.89488 0.96039 1.19912 0.90374 0.95737 1.05450 1.18892 0.83918 0.88863 0.77495 1.90838 1.69316 1.34543 1.52876 1.46115 1.04428 1.11765 1.70607 1.18483 0.90579 0.80628 0.93594 0.98708 1.21904 0.97505 1.02597 0.97206 1.21477 0.97957 0.97013 1.42252 0.90111 1.25889 1.03154 0.94385 0.95259 1.70068 1.37666 1.01238 1.46689 0.85229 0.78061 0.77707 0.78635 1.19292 1.21442 1.18434 1.21164 0.91397 0.83276 1.13904 1.43635 0.97733 1.02282 0.99606 1.94474 1.57400 1.65740 1.21379 1.94480 1.57750 1.66053 1.20726 0.88541 0.93961 0.85218 0.77976 0.78028 0.81320 0.75249 0.93367 0.97627 0.91087 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.76 71.24 0.70 -1.38 16 2 C -0.05 -1.01 5.87 -19.90 -0.12 -1.13 16 3 C -0.07 -0.64 9.69 22.33 0.22 -0.43 16 4 C -0.06 -0.58 10.03 22.23 0.22 -0.35 16 5 C -0.08 -1.46 9.54 22.52 0.21 -1.25 16 6 C -0.11 -3.60 5.87 -20.09 -0.12 -3.71 16 7 C 0.52 23.35 7.74 86.79 0.67 24.02 16 8 O -0.59 -33.23 14.11 14.62 0.21 -33.02 16 9 N -0.68 -29.15 5.02 -448.96 -2.25 -31.41 16 10 C 0.27 14.46 2.56 44.24 0.11 14.57 16 11 H 0.00 -0.32 7.58 -2.39 -0.02 -0.34 16 12 C -0.13 -7.02 9.26 71.98 0.67 -6.36 16 13 C -0.55 -28.86 8.73 25.60 0.22 -28.64 16 14 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 15 C 0.01 0.72 5.30 84.65 0.45 1.17 16 16 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 17 Si 0.98 41.37 29.54 68.60 2.03 43.39 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 C -0.02 -0.53 6.12 36.64 0.22 -0.31 16 22 N 0.04 1.74 1.49 -45.85 -0.07 1.67 16 23 O -0.17 -7.56 18.78 22.48 0.42 -7.13 16 24 O -0.17 -7.59 18.93 22.48 0.43 -7.17 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 0.93 7.31 -2.39 -0.02 0.91 16 27 H 0.13 0.92 8.08 -2.39 -0.02 0.90 16 28 H 0.20 -0.14 8.06 -2.91 -0.02 -0.16 16 29 H 0.20 -0.16 8.06 -2.91 -0.02 -0.18 16 30 H 0.17 2.48 6.41 -2.91 -0.02 2.46 16 31 H 0.41 13.67 6.57 -92.71 -0.61 13.06 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.07 4.07 6.07 -2.39 -0.01 4.05 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -84.71 309.60 4.99 -79.72 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.53 Total: 10.89 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 3.46 Total: -3.80 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.08 Total: -82.88 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: 1.05 Total: -47.32 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -84.71 4.99 -79.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050335994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.853 kcal (2) G-P(sol) polarization free energy of solvation -84.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds