Wall clock time and date at job start Tue Mar 31 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37967 * 119.93142 * 2 1 4 4 C 1.39562 * 119.85621 * 180.02562 * 3 2 1 5 5 C 1.47842 * 120.14340 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00236 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99678 * 180.27345 * 5 4 3 8 8 C 1.46507 * 119.99898 * 179.72161 * 7 5 4 9 9 H 1.08997 * 109.47316 * 325.00678 * 8 7 5 10 10 C 1.53002 * 109.46579 * 85.00697 * 8 7 5 11 11 C 1.50697 * 109.47244 * 205.00420 * 8 7 5 12 12 H 1.08002 * 119.99735 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99947 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99982 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99795 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47203 * 89.99889 * 15 13 11 17 17 H 1.48497 * 109.46751 * 209.99733 * 15 13 11 18 18 H 1.48504 * 109.47150 * 329.99673 * 15 13 11 19 19 C 1.39596 * 119.70828 * 0.25782 * 4 3 2 20 20 C 1.37932 * 119.85268 * 359.48873 * 19 4 3 21 21 C 1.38341 * 119.92453 * 180.02562 * 2 1 3 22 22 N 1.48016 * 119.85468 * 359.97438 * 21 2 1 23 23 O 1.21795 * 119.99821 * 186.46018 * 22 21 2 24 24 O 1.21801 * 119.99913 * 6.46664 * 22 21 2 25 25 H 1.08990 * 109.47210 * 96.91875 * 1 2 3 26 26 H 1.09002 * 109.46895 * 216.92148 * 1 2 3 27 27 H 1.08998 * 109.46572 * 336.91809 * 1 2 3 28 28 H 1.08006 * 120.07141 * 359.97438 * 3 2 1 29 29 H 0.96993 * 120.00250 * 359.72983 * 7 5 4 30 30 H 1.08997 * 109.47312 * 59.99979 * 10 8 7 31 31 H 1.08997 * 109.46834 * 180.02562 * 10 8 7 32 32 H 1.09004 * 109.47134 * 300.00098 * 10 8 7 33 33 H 0.96998 * 119.99719 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.07067 * 179.72504 * 19 4 3 35 35 H 1.08001 * 119.93015 * 180.25211 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1957 0.0000 4 6 3.5911 1.1938 -0.0005 5 6 4.3352 2.4713 -0.0011 6 8 3.7315 3.5264 -0.0006 7 7 5.6829 2.4661 -0.0072 8 6 6.4203 3.7321 -0.0139 9 1 5.8731 4.4682 -0.6028 10 6 6.5749 4.2397 1.4211 11 6 7.7830 3.5165 -0.6201 12 1 8.0709 2.5347 -0.9661 13 6 8.6623 4.5725 -0.7329 14 7 8.3115 5.7681 -0.3120 15 14 10.3512 4.3053 -1.4849 16 1 10.2814 4.5300 -2.9512 17 1 11.3173 5.2593 -0.8835 18 1 10.7976 2.9144 -1.2179 19 6 4.2813 -0.0195 -0.0065 20 6 3.5810 -1.2078 -0.0012 21 6 2.1972 -1.1990 -0.0005 22 7 1.4522 -2.4780 -0.0005 23 8 2.0513 -3.5317 0.1177 24 8 0.2399 -2.4766 -0.1189 25 1 -0.3633 -0.1238 -1.0201 26 1 -0.3633 -0.8216 0.6174 27 1 -0.3632 0.9454 0.4029 28 1 1.6555 2.1310 -0.0004 29 1 6.1646 1.6243 -0.0073 30 1 7.1222 3.5036 2.0099 31 1 7.1231 5.1818 1.4161 32 1 5.5892 4.3956 1.8596 33 1 8.9300 6.5111 -0.3917 34 1 5.3612 -0.0278 -0.0115 35 1 4.1137 -2.1473 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:54 Heat of formation + Delta-G solvation = -35.056998 kcal Electronic energy + Delta-G solvation = -20832.013825 eV Core-core repulsion = 17411.616292 eV Total energy + Delta-G solvation = -3420.397533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.38505 -41.43816 -39.74771 -37.81226 -36.85441 -34.80913 -33.96940 -33.12604 -30.90360 -28.95717 -27.42969 -27.23109 -24.70045 -23.50989 -22.85785 -21.44356 -20.09006 -19.79396 -19.39969 -18.72433 -17.83813 -17.44838 -16.64521 -16.20932 -16.06683 -15.81224 -15.23435 -14.86234 -14.75038 -14.44103 -14.17013 -13.82673 -13.72435 -13.34148 -13.00859 -12.91089 -12.78492 -12.61568 -12.53354 -12.28801 -12.28481 -12.14877 -11.77532 -11.16397 -11.06832 -10.77339 -10.62323 -10.25422 -9.89633 -8.19865 -6.37520 -1.46488 -0.17158 -0.00300 0.27798 1.45863 1.46524 1.54189 1.56892 2.16009 2.41228 2.45087 3.11714 3.21765 3.25868 3.49372 3.68572 3.75685 4.05815 4.33320 4.50059 4.57815 4.64988 4.72388 4.83953 4.88817 4.93998 4.99352 5.04738 5.08626 5.36450 5.44506 5.51772 5.63475 5.83182 6.05386 6.50144 6.67655 6.75638 7.21919 7.38365 8.86445 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.003607 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.778826 B = 7760.855963 C = 8388.420365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.073 4.073 4 C -0.073 4.073 5 C 0.537 3.463 6 O -0.582 6.582 7 N -0.689 5.689 8 C 0.269 3.731 9 H 0.005 0.995 10 C -0.136 4.136 11 C -0.549 4.549 12 H 0.078 0.922 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.971 3.029 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.258 1.258 19 C -0.085 4.085 20 C -0.046 4.046 21 C -0.046 4.046 22 N 0.032 4.968 23 O -0.182 6.182 24 O -0.157 6.157 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.014 0.986 33 H 0.266 0.734 34 H 0.175 0.825 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -14.146 1.033 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.019 4.019 3 C -0.093 4.093 4 C -0.077 4.077 5 C 0.323 3.677 6 O -0.464 6.464 7 N -0.338 5.338 8 C 0.166 3.834 9 H 0.023 0.977 10 C -0.195 4.195 11 C -0.587 4.587 12 H 0.096 0.904 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.796 3.204 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.182 1.182 19 C -0.104 4.104 20 C -0.064 4.064 21 C -0.130 4.130 22 N 0.547 4.453 23 O -0.393 6.393 24 O -0.373 6.373 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.175 0.825 29 H 0.245 0.755 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.522 -12.627 1.058 15.850 hybrid contribution 0.880 -0.176 -0.322 0.953 sum -8.642 -12.803 0.736 15.465 Atomic orbital electron populations 1.21389 0.86687 1.05503 1.05210 1.19969 0.99303 0.89384 0.93251 1.21291 0.92483 0.98291 0.97205 1.20499 0.94841 0.93431 0.98922 1.18620 0.83074 0.88747 0.77239 1.90749 1.69260 1.34005 1.52347 1.46255 1.05151 1.11567 1.70825 1.18462 0.90383 0.80935 0.93619 0.97727 1.21923 0.97975 1.02406 0.97202 1.21531 0.98849 0.96777 1.41509 0.90437 1.25765 1.02598 0.94583 0.95415 1.70040 1.37623 1.01083 1.46705 0.85358 0.78370 0.78607 0.78098 1.20494 1.21172 1.18168 1.21580 1.02277 0.89044 0.97549 1.21188 0.90264 1.01409 0.93584 1.21319 0.93067 0.82829 1.15779 1.43709 1.01147 1.02989 0.97431 1.94539 1.70421 1.20153 1.54160 1.94464 0.96506 1.93862 1.52492 0.88328 0.88541 0.88955 0.82450 0.75528 0.93784 0.91321 0.96688 0.92495 0.80750 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.67 71.24 0.62 -1.50 16 2 C -0.02 -0.36 5.87 -19.90 -0.12 -0.48 16 3 C -0.07 -1.72 9.22 22.53 0.21 -1.52 16 4 C -0.07 -1.92 5.87 -20.09 -0.12 -2.04 16 5 C 0.54 19.56 7.74 86.79 0.67 20.23 16 6 O -0.58 -26.29 16.01 -3.88 -0.06 -26.35 16 7 N -0.69 -25.77 5.02 -448.97 -2.25 -28.03 16 8 C 0.27 13.04 2.56 44.24 0.11 13.15 16 9 H 0.00 0.28 7.58 -2.39 -0.02 0.26 16 10 C -0.14 -6.50 9.26 71.98 0.67 -5.84 16 11 C -0.55 -27.19 8.73 25.60 0.22 -26.97 16 12 H 0.08 3.52 7.74 -2.91 -0.02 3.49 16 13 C 0.02 0.86 5.30 84.66 0.45 1.31 16 14 N -0.92 -50.48 11.32 21.45 0.24 -50.24 16 15 Si 0.97 39.97 29.54 68.60 2.03 42.00 16 16 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.09 -1.65 9.54 22.53 0.21 -1.43 16 20 C -0.05 -0.81 9.54 22.23 0.21 -0.60 16 21 C -0.05 -0.98 6.84 36.44 0.25 -0.73 16 22 N 0.03 0.76 4.45 -46.32 -0.21 0.55 16 23 O -0.18 -4.53 18.45 18.89 0.35 -4.18 16 24 O -0.16 -3.73 15.33 18.89 0.29 -3.44 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.62 5.85 -2.39 -0.01 1.61 16 27 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 28 H 0.16 3.73 7.65 -2.91 -0.02 3.70 16 29 H 0.41 12.08 6.57 -92.71 -0.61 11.47 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 32 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.18 2.54 6.41 -2.91 -0.02 2.53 16 35 H 0.18 2.38 7.61 -2.91 -0.02 2.35 16 Total: -1.00 -64.08 306.83 4.31 -59.77 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.53 Total: 16.31 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 3.39 Total: -6.41 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.22 Total: -77.71 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: 0.58 Total: -33.97 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -64.08 4.31 -59.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.715 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds