Wall clock time and date at job start Tue Mar 31 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37978 * 119.93203 * 2 1 4 4 C 1.39558 * 119.85159 * 180.02562 * 3 2 1 5 5 C 1.47845 * 120.14002 * 179.97438 * 4 3 2 6 6 O 1.21554 * 119.99931 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00055 * 179.97438 * 5 4 3 8 8 C 1.46506 * 120.00184 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46990 * 35.00609 * 8 7 5 10 10 C 1.52994 * 109.47087 * 275.00400 * 8 7 5 11 11 C 1.50701 * 109.47041 * 155.00407 * 8 7 5 12 12 H 1.08002 * 119.99741 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00054 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99908 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00135 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47074 * 89.99877 * 15 13 11 17 17 H 1.48501 * 109.47033 * 210.00103 * 15 13 11 18 18 H 1.48503 * 109.47039 * 329.99829 * 15 13 11 19 19 C 1.39592 * 119.71426 * 0.25515 * 4 3 2 20 20 C 1.37939 * 119.85237 * 359.48861 * 19 4 3 21 21 C 1.38340 * 119.92400 * 180.02562 * 2 1 3 22 22 N 1.48019 * 119.85446 * 0.02562 * 21 2 1 23 23 O 1.21802 * 119.99645 * 186.41800 * 22 21 2 24 24 O 1.21791 * 120.00238 * 6.41833 * 22 21 2 25 25 H 1.09004 * 109.47484 * 96.92439 * 1 2 3 26 26 H 1.08998 * 109.47733 * 216.92372 * 1 2 3 27 27 H 1.09001 * 109.47409 * 336.92577 * 1 2 3 28 28 H 1.07993 * 120.06913 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99807 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.47333 * 179.97438 * 10 8 7 31 31 H 1.09006 * 109.47273 * 299.99976 * 10 8 7 32 32 H 1.09004 * 109.47487 * 59.99781 * 10 8 7 33 33 H 0.97001 * 120.00293 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.07458 * 179.74968 * 19 4 3 35 35 H 1.07998 * 119.92769 * 180.25506 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.1957 0.0000 4 6 3.5910 1.1938 -0.0005 5 6 4.3351 2.4713 -0.0011 6 8 3.7314 3.5263 -0.0006 7 7 5.6828 2.4661 -0.0011 8 6 6.4203 3.7321 -0.0011 9 1 5.8758 4.4697 0.5884 10 6 6.5683 4.2360 -1.4381 11 6 7.7858 3.5179 0.5993 12 1 8.0756 2.5369 0.9457 13 6 8.6653 4.5744 0.7062 14 7 8.3122 5.7690 0.2847 15 14 10.3577 4.3091 1.4511 16 1 11.3179 3.9412 0.3797 17 1 10.8090 5.5598 2.1123 18 1 10.2915 3.2154 2.4534 19 6 4.2812 -0.0195 -0.0065 20 6 3.5809 -1.2079 -0.0011 21 6 2.1970 -1.1990 -0.0005 22 7 1.4520 -2.4780 -0.0017 23 8 2.0512 -3.5319 0.1158 24 8 0.2399 -2.4766 -0.1201 25 1 -0.3634 -0.1239 -1.0202 26 1 -0.3634 -0.8215 0.6173 27 1 -0.3634 0.9454 0.4028 28 1 1.6555 2.1310 -0.0004 29 1 6.1646 1.6242 -0.0011 30 1 7.1165 5.1781 -1.4381 31 1 7.1128 3.4984 -2.0276 32 1 5.5806 4.3909 -1.8724 33 1 8.9310 6.5123 0.3596 34 1 5.3611 -0.0278 -0.0110 35 1 4.1137 -2.1473 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:59 Heat of formation + Delta-G solvation = -18.153921 kcal Electronic energy + Delta-G solvation = -20831.349186 eV Core-core repulsion = 17411.684626 eV Total energy + Delta-G solvation = -3419.664560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.40802 -40.23813 -38.45104 -36.82131 -35.09566 -33.58811 -32.46223 -32.06770 -29.17198 -28.06559 -26.25476 -25.39366 -23.51107 -22.59651 -21.30101 -19.94760 -19.05599 -18.73760 -18.01323 -17.74867 -16.24254 -15.95725 -15.16778 -15.04869 -14.68761 -14.56888 -13.93903 -13.83584 -13.71540 -12.99895 -12.91304 -12.61167 -12.49620 -11.86676 -11.70281 -11.55198 -11.28452 -11.24063 -11.07757 -10.91728 -10.84649 -10.47450 -10.36676 -9.72791 -9.53020 -9.39075 -9.20992 -8.70938 -8.19307 -6.25375 -4.35959 -0.45817 0.71041 1.02704 1.23944 2.67320 3.16378 3.23679 3.25211 3.57933 3.64784 4.08214 4.11061 4.23699 4.55256 4.64557 4.84205 4.91946 5.07631 5.15965 5.33379 5.38860 5.54898 5.67085 5.77842 5.86616 5.99947 6.35742 6.65479 6.77307 6.96048 7.16930 7.33500 7.51283 7.52612 7.72689 7.98179 8.35212 8.55817 8.78583 9.31813 10.80611 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.003609 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.033408 B = 7757.256109 C = 8396.518364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 C -0.073 4.073 4 C -0.060 4.060 5 C 0.535 3.465 6 O -0.537 6.537 7 N -0.693 5.693 8 C 0.263 3.737 9 H 0.053 0.947 10 C -0.148 4.148 11 C -0.539 4.539 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.098 4.098 20 C -0.056 4.056 21 C -0.041 4.041 22 N 0.033 4.967 23 O -0.169 6.169 24 O -0.159 6.159 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.390 0.610 30 H 0.093 0.907 31 H 0.028 0.972 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.153 0.847 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -11.886 -1.222 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.023 4.023 3 C -0.092 4.092 4 C -0.063 4.063 5 C 0.319 3.681 6 O -0.416 6.416 7 N -0.340 5.340 8 C 0.162 3.838 9 H 0.071 0.929 10 C -0.207 4.207 11 C -0.577 4.577 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.519 5.519 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.118 4.118 20 C -0.075 4.075 21 C -0.125 4.125 22 N 0.550 4.450 23 O -0.382 6.382 24 O -0.374 6.374 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.177 0.823 29 H 0.224 0.776 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.973 -10.292 -1.231 14.384 hybrid contribution 1.137 -0.864 0.341 1.468 sum -8.836 -11.157 -0.890 14.259 Atomic orbital electron populations 1.21315 0.88185 1.04678 1.04607 1.19847 0.98256 0.90118 0.94104 1.21296 0.92917 0.97786 0.97215 1.20902 0.94615 0.94895 0.95902 1.18065 0.83499 0.87593 0.78956 1.90775 1.68510 1.31757 1.50595 1.46589 1.04695 1.12378 1.70377 1.18887 0.90718 0.79849 0.94364 0.92932 1.22096 0.98326 1.03231 0.97030 1.21166 0.98418 0.96161 1.42003 0.91950 1.24880 0.98825 0.94854 0.94998 1.69888 1.36201 1.00226 1.45547 0.86415 0.83388 0.77843 0.79288 1.20441 1.20960 1.19786 1.21438 1.01293 0.90140 0.98907 1.20951 0.90758 1.00738 0.95028 1.21104 0.92444 0.83178 1.15784 1.43584 1.01111 1.02782 0.97571 1.94540 1.70424 1.19749 1.53505 1.94462 0.96331 1.93769 1.52803 0.89250 0.88387 0.90492 0.82293 0.77625 0.88842 0.95263 0.96526 0.92382 0.82937 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.66 36.00 0.31 -0.88 16 2 C -0.02 -0.24 5.87 -104.68 -0.61 -0.86 16 3 C -0.07 -0.90 9.22 -39.18 -0.36 -1.26 16 4 C -0.06 -0.82 5.87 -104.97 -0.62 -1.43 16 5 C 0.54 9.76 7.74 -12.33 -0.10 9.66 16 6 O -0.54 -11.78 16.01 5.32 0.09 -11.70 16 7 N -0.69 -13.12 5.02 -55.88 -0.28 -13.41 16 8 C 0.26 6.27 2.56 -69.08 -0.18 6.09 16 9 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 10 C -0.15 -3.48 9.26 37.15 0.34 -3.13 16 11 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.88 -23.81 11.32 55.43 0.63 -23.18 16 15 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 C -0.10 -1.09 9.54 -39.19 -0.37 -1.46 16 20 C -0.06 -0.58 9.54 -39.64 -0.38 -0.96 16 21 C -0.04 -0.49 6.84 -79.85 -0.55 -1.03 16 22 N 0.03 0.43 4.45 34.01 0.15 0.58 16 23 O -0.17 -2.28 18.45 -29.46 -0.54 -2.83 16 24 O -0.16 -2.05 15.33 -29.46 -0.45 -2.50 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.10 0.93 5.86 -51.93 -0.30 0.62 16 27 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 28 H 0.16 1.91 7.65 -52.49 -0.40 1.51 16 29 H 0.39 6.14 6.57 -40.82 -0.27 5.87 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.15 1.38 6.41 -52.49 -0.34 1.05 16 35 H 0.16 1.34 7.61 -52.49 -0.40 0.94 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -29.34 306.84 -7.35 -36.69 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.64 Total: 4.36 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.90 Total: -7.40 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.50 Total: -36.00 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.91 Total: -17.02 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.34 -7.35 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.541 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds