Wall clock time and date at job start Tue Mar 31 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37978 * 119.93203 * 2 1 4 4 C 1.39558 * 119.85159 * 180.02562 * 3 2 1 5 5 C 1.47845 * 120.14002 * 179.97438 * 4 3 2 6 6 O 1.21554 * 119.99931 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00055 * 179.97438 * 5 4 3 8 8 C 1.46506 * 120.00184 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46990 * 35.00609 * 8 7 5 10 10 C 1.52994 * 109.47087 * 275.00400 * 8 7 5 11 11 C 1.50701 * 109.47041 * 155.00407 * 8 7 5 12 12 H 1.08002 * 119.99741 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00054 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99908 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00135 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47074 * 89.99877 * 15 13 11 17 17 H 1.48501 * 109.47033 * 210.00103 * 15 13 11 18 18 H 1.48503 * 109.47039 * 329.99829 * 15 13 11 19 19 C 1.39592 * 119.71426 * 0.25515 * 4 3 2 20 20 C 1.37939 * 119.85237 * 359.48861 * 19 4 3 21 21 C 1.38340 * 119.92400 * 180.02562 * 2 1 3 22 22 N 1.48019 * 119.85446 * 0.02562 * 21 2 1 23 23 O 1.21802 * 119.99645 * 186.41800 * 22 21 2 24 24 O 1.21791 * 120.00238 * 6.41833 * 22 21 2 25 25 H 1.09004 * 109.47484 * 96.92439 * 1 2 3 26 26 H 1.08998 * 109.47733 * 216.92372 * 1 2 3 27 27 H 1.09001 * 109.47409 * 336.92577 * 1 2 3 28 28 H 1.07993 * 120.06913 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99807 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.47333 * 179.97438 * 10 8 7 31 31 H 1.09006 * 109.47273 * 299.99976 * 10 8 7 32 32 H 1.09004 * 109.47487 * 59.99781 * 10 8 7 33 33 H 0.97001 * 120.00293 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.07458 * 179.74968 * 19 4 3 35 35 H 1.07998 * 119.92769 * 180.25506 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.1957 0.0000 4 6 3.5910 1.1938 -0.0005 5 6 4.3351 2.4713 -0.0011 6 8 3.7314 3.5263 -0.0006 7 7 5.6828 2.4661 -0.0011 8 6 6.4203 3.7321 -0.0011 9 1 5.8758 4.4697 0.5884 10 6 6.5683 4.2360 -1.4381 11 6 7.7858 3.5179 0.5993 12 1 8.0756 2.5369 0.9457 13 6 8.6653 4.5744 0.7062 14 7 8.3122 5.7690 0.2847 15 14 10.3577 4.3091 1.4511 16 1 11.3179 3.9412 0.3797 17 1 10.8090 5.5598 2.1123 18 1 10.2915 3.2154 2.4534 19 6 4.2812 -0.0195 -0.0065 20 6 3.5809 -1.2079 -0.0011 21 6 2.1970 -1.1990 -0.0005 22 7 1.4520 -2.4780 -0.0017 23 8 2.0512 -3.5319 0.1158 24 8 0.2399 -2.4766 -0.1201 25 1 -0.3634 -0.1239 -1.0202 26 1 -0.3634 -0.8215 0.6173 27 1 -0.3634 0.9454 0.4028 28 1 1.6555 2.1310 -0.0004 29 1 6.1646 1.6242 -0.0011 30 1 7.1165 5.1781 -1.4381 31 1 7.1128 3.4984 -2.0276 32 1 5.5806 4.3909 -1.8724 33 1 8.9310 6.5123 0.3596 34 1 5.3611 -0.0278 -0.0110 35 1 4.1137 -2.1473 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:58 Heat of formation + Delta-G solvation = -35.091306 kcal Electronic energy + Delta-G solvation = -20832.083646 eV Core-core repulsion = 17411.684626 eV Total energy + Delta-G solvation = -3420.399020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.38534 -41.43817 -39.74747 -37.81227 -36.85472 -34.80943 -33.96982 -33.12587 -30.90467 -28.95685 -27.43022 -27.23085 -24.70044 -23.51012 -22.85776 -21.44341 -20.08989 -19.79403 -19.39969 -18.72412 -17.83855 -17.45006 -16.64351 -16.20057 -16.07299 -15.81841 -15.23440 -14.87268 -14.73797 -14.44376 -14.16263 -13.81145 -13.75012 -13.33550 -13.03913 -12.89120 -12.74677 -12.61590 -12.53373 -12.31614 -12.28332 -12.15979 -11.77662 -11.15177 -11.07087 -10.77414 -10.62671 -10.25356 -9.89525 -8.19854 -6.37541 -1.46456 -0.17198 -0.00279 0.27786 1.45694 1.46700 1.54282 1.56726 2.16035 2.41158 2.45107 3.11681 3.21799 3.25872 3.49362 3.68561 3.75669 4.05840 4.33291 4.50070 4.57821 4.64999 4.72269 4.83941 4.88700 4.93994 4.99346 5.04676 5.08636 5.36439 5.44500 5.51750 5.63372 5.83172 6.05305 6.50157 6.67633 6.75617 7.21921 7.38368 8.86453 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.003609 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.033408 B = 7757.256109 C = 8396.518364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 C -0.073 4.073 4 C -0.073 4.073 5 C 0.537 3.463 6 O -0.582 6.582 7 N -0.689 5.689 8 C 0.269 3.731 9 H 0.005 0.995 10 C -0.136 4.136 11 C -0.549 4.549 12 H 0.077 0.923 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.971 3.029 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.263 1.263 19 C -0.085 4.085 20 C -0.046 4.046 21 C -0.046 4.046 22 N 0.032 4.968 23 O -0.183 6.183 24 O -0.157 6.157 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.266 0.734 34 H 0.175 0.825 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 -14.128 -1.057 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.019 4.019 3 C -0.093 4.093 4 C -0.077 4.077 5 C 0.323 3.677 6 O -0.464 6.464 7 N -0.338 5.338 8 C 0.166 3.834 9 H 0.023 0.977 10 C -0.195 4.195 11 C -0.587 4.587 12 H 0.095 0.905 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.187 1.187 19 C -0.105 4.105 20 C -0.064 4.064 21 C -0.130 4.130 22 N 0.547 4.453 23 O -0.393 6.393 24 O -0.373 6.373 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.175 0.825 29 H 0.245 0.755 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.540 -12.606 -1.065 15.845 hybrid contribution 0.891 -0.186 0.283 0.953 sum -8.648 -12.792 -0.782 15.461 Atomic orbital electron populations 1.21388 0.86687 1.05487 1.05230 1.19969 0.99301 0.89382 0.93249 1.21290 0.92481 0.98289 0.97205 1.20498 0.94842 0.93431 0.98924 1.18620 0.83075 0.88748 0.77238 1.90749 1.69257 1.34005 1.52351 1.46255 1.05150 1.11567 1.70826 1.18460 0.90385 0.80942 0.93607 0.97709 1.21924 0.97962 1.02400 0.97217 1.21528 0.98660 0.96798 1.41685 0.90455 1.25762 1.02621 0.94565 0.95407 1.70039 1.37495 1.01110 1.46807 0.85354 0.78798 0.77618 0.78638 1.19680 1.21474 1.18700 1.21581 1.02277 0.89044 0.97552 1.21190 0.90265 1.01407 0.93584 1.21320 0.93067 0.82828 1.15780 1.43709 1.01145 1.02991 0.97431 1.94541 1.70425 1.20142 1.54200 1.94462 0.96510 1.93864 1.52455 0.88270 0.88572 0.88976 0.82450 0.75528 0.91325 0.93800 0.96681 0.92493 0.80747 0.80089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.66 71.23 0.62 -1.50 16 2 C -0.02 -0.36 5.87 -19.90 -0.12 -0.47 16 3 C -0.07 -1.72 9.22 22.53 0.21 -1.51 16 4 C -0.07 -1.92 5.87 -20.09 -0.12 -2.04 16 5 C 0.54 19.56 7.74 86.79 0.67 20.24 16 6 O -0.58 -26.29 16.01 -3.88 -0.06 -26.35 16 7 N -0.69 -25.78 5.02 -448.98 -2.25 -28.03 16 8 C 0.27 13.04 2.56 44.24 0.11 13.15 16 9 H 0.01 0.29 7.58 -2.39 -0.02 0.27 16 10 C -0.14 -6.50 9.26 71.98 0.67 -5.83 16 11 C -0.55 -27.21 8.73 25.60 0.22 -26.98 16 12 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.02 0.86 5.30 84.65 0.45 1.31 16 14 N -0.92 -50.48 11.32 21.44 0.24 -50.23 16 15 Si 0.97 40.00 29.54 68.60 2.03 42.02 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 C -0.09 -1.65 9.54 22.53 0.21 -1.44 16 20 C -0.05 -0.82 9.54 22.23 0.21 -0.60 16 21 C -0.05 -0.98 6.84 36.43 0.25 -0.73 16 22 N 0.03 0.76 4.45 -46.32 -0.21 0.55 16 23 O -0.18 -4.55 18.45 18.88 0.35 -4.20 16 24 O -0.16 -3.71 15.33 18.90 0.29 -3.42 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.62 5.86 -2.39 -0.01 1.61 16 27 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 28 H 0.16 3.73 7.65 -2.91 -0.02 3.70 16 29 H 0.41 12.08 6.57 -92.71 -0.61 11.47 16 30 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 31 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.18 2.54 6.41 -2.91 -0.02 2.53 16 35 H 0.18 2.38 7.61 -2.91 -0.02 2.36 16 Total: -1.00 -64.09 306.84 4.31 -59.79 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.53 Total: 16.29 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 3.39 Total: -6.41 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.22 Total: -77.71 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: 0.58 Total: -33.97 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -64.09 4.31 -59.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.694 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds