Wall clock time and date at job start Tue Mar 31 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39602 * 120.07206 * 2 1 4 4 C 1.47848 * 120.14624 * 359.97438 * 3 2 1 5 5 O 1.21549 * 119.99614 * 6.70713 * 4 3 2 6 6 N 1.34778 * 119.99707 * 186.70977 * 4 3 2 7 7 C 1.46504 * 119.99607 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46938 * 324.99369 * 7 6 4 9 9 C 1.52995 * 109.47046 * 84.99665 * 7 6 4 10 10 C 1.50698 * 109.46836 * 204.99998 * 7 6 4 11 11 H 1.08001 * 120.00171 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00073 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00284 * 179.97438 * 12 10 7 14 14 Si 1.86806 * 119.99691 * 359.97438 * 12 10 7 15 15 H 1.48493 * 109.47295 * 90.00147 * 14 12 10 16 16 H 1.48502 * 109.47100 * 210.00004 * 14 12 10 17 17 H 1.48498 * 109.47312 * 329.99852 * 14 12 10 18 18 C 1.39559 * 119.70830 * 180.29901 * 3 2 1 19 19 C 1.37980 * 119.85334 * 359.42325 * 18 3 2 20 20 C 1.38338 * 120.14611 * 0.27616 * 19 18 3 21 21 C 1.37930 * 120.07449 * 179.69646 * 2 1 3 22 22 N 1.48010 * 119.92897 * 0.02562 * 21 2 1 23 23 O 1.21800 * 120.00192 * 173.28976 * 22 21 2 24 24 O 1.21795 * 119.99750 * 353.28840 * 22 21 2 25 25 H 1.08998 * 109.47729 * 269.42569 * 1 2 3 26 26 H 1.09006 * 109.47262 * 29.42764 * 1 2 3 27 27 H 1.09000 * 109.47232 * 149.42512 * 1 2 3 28 28 H 0.96991 * 120.00219 * 0.02562 * 6 4 3 29 29 H 1.08999 * 109.47083 * 60.00264 * 9 7 6 30 30 H 1.09000 * 109.46606 * 179.97438 * 9 7 6 31 31 H 1.08995 * 109.47565 * 299.99557 * 9 7 6 32 32 H 0.96992 * 119.99887 * 179.97438 * 13 12 10 33 33 H 1.08006 * 120.07368 * 179.70147 * 18 3 2 34 34 H 1.07999 * 119.92571 * 180.25939 * 19 18 3 35 35 H 1.07997 * 119.85667 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2081 0.0000 4 6 1.4721 2.4913 -0.0006 5 8 0.2629 2.4995 0.1219 6 7 2.1436 3.6519 -0.1370 7 6 1.4160 4.9235 -0.1370 8 1 0.4501 4.7894 -0.6241 9 6 1.2000 5.3874 1.3049 10 6 2.2156 5.9597 -0.8838 11 1 3.1705 5.6975 -1.3149 12 6 1.7282 7.2426 -1.0167 13 7 2.4263 8.1471 -1.6680 14 14 0.0762 7.6959 -0.2716 15 1 0.2762 8.1818 1.1173 16 1 -0.5563 8.7660 -1.0841 17 1 -0.8045 6.5004 -0.2558 18 6 3.6020 1.1993 -0.0063 19 6 4.2813 -0.0017 -0.0005 20 6 3.5820 -1.1954 0.0058 21 6 2.1982 -1.1936 0.0063 22 7 1.4582 -2.4754 0.0125 23 8 2.0610 -3.5272 -0.1051 24 8 0.2464 -2.4784 0.1354 25 1 -0.3634 -0.0103 1.0276 26 1 -0.3634 0.8951 -0.5049 27 1 -0.3634 -0.8848 -0.5227 28 1 3.1085 3.6453 -0.2351 29 1 2.1658 5.5215 1.7919 30 1 0.6590 6.3337 1.3048 31 1 0.6216 4.6380 1.8450 32 1 2.0831 9.0495 -1.7618 33 1 4.1492 2.1305 -0.0112 34 1 5.3613 -0.0099 -0.0011 35 1 4.1184 -2.1327 0.0108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:04 Heat of formation + Delta-G solvation = 0.925928 kcal Electronic energy + Delta-G solvation = -21289.998415 eV Core-core repulsion = 17871.161220 eV Total energy + Delta-G solvation = -3418.837196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37463 -40.41196 -38.45523 -36.77841 -35.40406 -33.28593 -32.66745 -32.07426 -29.99529 -27.82937 -26.18262 -25.33050 -24.02319 -22.38951 -21.31304 -20.19128 -19.07948 -18.69514 -17.69873 -17.37677 -16.50046 -16.22165 -16.01609 -15.34128 -14.78327 -14.73468 -13.90765 -13.57806 -13.36024 -13.04613 -12.70691 -12.63899 -12.43442 -12.31562 -12.14038 -11.95280 -11.53070 -11.36528 -11.22957 -10.93560 -10.66483 -10.30580 -9.84693 -9.78179 -9.41185 -9.33675 -9.22337 -8.88223 -8.37579 -6.32330 -4.36488 -0.32239 0.45517 1.14059 1.27068 2.65026 3.15147 3.28218 3.30767 3.45193 3.53183 4.14656 4.21184 4.25985 4.43630 4.55716 4.63043 4.97450 5.02424 5.23826 5.33769 5.55869 5.67740 5.75368 5.91243 6.00626 6.16736 6.18782 6.29604 6.40360 6.55133 6.71080 6.99226 7.08775 7.34176 7.57245 7.92306 8.30314 8.54355 8.67097 9.27168 10.79566 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034503 B = 0.004156 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.326666 B = 6735.217679 C = 7295.751828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.044 3.956 3 C -0.132 4.132 4 C 0.546 3.454 5 O -0.534 6.534 6 N -0.689 5.689 7 C 0.237 3.763 8 H 0.053 0.947 9 C -0.162 4.162 10 C -0.540 4.540 11 H 0.080 0.920 12 C 0.081 3.919 13 N -0.889 5.889 14 Si 0.885 3.115 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.261 1.261 18 C -0.031 4.031 19 C -0.133 4.133 20 C -0.036 4.036 21 C -0.063 4.063 22 N 0.035 4.965 23 O -0.173 6.173 24 O -0.153 6.153 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.395 0.605 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.269 0.731 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -15.362 4.181 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 C -0.136 4.136 4 C 0.332 3.668 5 O -0.413 6.413 6 N -0.337 5.337 7 C 0.134 3.866 8 H 0.070 0.930 9 C -0.220 4.220 10 C -0.578 4.578 11 H 0.098 0.902 12 C -0.124 4.124 13 N -0.526 5.526 14 Si 0.715 3.285 15 H -0.202 1.202 16 H -0.220 1.220 17 H -0.186 1.186 18 C -0.050 4.050 19 C -0.152 4.152 20 C -0.055 4.055 21 C -0.146 4.146 22 N 0.552 4.448 23 O -0.385 6.385 24 O -0.368 6.368 25 H 0.109 0.891 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.229 0.771 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.373 -14.508 4.187 15.472 hybrid contribution -0.270 0.089 0.362 0.460 sum 3.103 -14.420 4.548 15.435 Atomic orbital electron populations 1.21882 0.87425 1.06910 1.05021 1.19987 0.98951 0.89016 0.87916 1.20110 0.93622 0.93856 1.05967 1.17909 0.87260 0.83366 0.78291 1.90673 1.13421 1.86604 1.50636 1.46177 1.10931 1.06184 1.70431 1.19201 0.94188 0.80075 0.93149 0.92965 1.22459 1.00735 0.99703 0.99148 1.20981 1.07079 0.93930 1.35805 0.90159 1.24819 0.97234 0.95943 0.94381 1.69853 1.38158 1.03884 1.40676 0.86878 0.84418 0.78645 0.78600 1.20210 1.22005 1.18600 1.21917 0.93201 0.99737 0.90159 1.21126 1.01213 0.90481 1.02346 1.21187 0.90795 1.01011 0.92510 1.20862 0.92431 0.83355 1.17985 1.43508 1.01156 1.02581 0.97595 1.94516 1.70145 1.20021 1.53828 1.94474 0.96160 1.93593 1.52565 0.89079 0.86654 0.88830 0.77079 0.92718 0.93185 0.94397 0.92121 0.83267 0.82985 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 7.92 36.00 0.29 -1.96 16 2 C 0.04 0.60 5.91 -104.23 -0.62 -0.02 16 3 C -0.13 -1.78 5.87 -104.96 -0.62 -2.40 16 4 C 0.55 9.41 7.67 -12.33 -0.09 9.32 16 5 O -0.53 -10.71 12.89 5.32 0.07 -10.64 16 6 N -0.69 -12.33 5.02 -55.88 -0.28 -12.61 16 7 C 0.24 5.25 2.15 -69.08 -0.15 5.10 16 8 H 0.05 1.28 6.63 -51.93 -0.34 0.93 16 9 C -0.16 -3.38 8.97 37.16 0.33 -3.05 16 10 C -0.54 -13.75 9.31 -34.44 -0.32 -14.07 16 11 H 0.08 2.14 7.98 -52.49 -0.42 1.72 16 12 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 13 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 14 Si 0.89 20.81 24.38 -169.99 -4.14 16.66 16 15 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 18 C -0.03 -0.31 9.52 -39.18 -0.37 -0.68 16 19 C -0.13 -1.05 10.03 -39.64 -0.40 -1.45 16 20 C -0.04 -0.34 9.55 -39.49 -0.38 -0.71 16 21 C -0.06 -0.78 6.82 -80.01 -0.55 -1.33 16 22 N 0.04 0.49 4.45 33.93 0.15 0.64 16 23 O -0.17 -2.40 18.46 -29.46 -0.54 -2.94 16 24 O -0.15 -2.24 15.24 -29.46 -0.45 -2.69 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.12 1.86 5.33 -51.93 -0.28 1.59 16 27 H 0.09 1.28 5.41 -51.93 -0.28 1.00 16 28 H 0.39 5.94 6.61 -40.82 -0.27 5.67 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.15 1.18 6.46 -52.48 -0.34 0.85 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 1.13 7.61 -52.49 -0.40 0.73 16 LS Contribution 294.18 15.07 4.43 4.43 Total: -1.00 -30.29 294.18 -6.33 -36.62 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.37 Total: 4.26 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.97 Total: -9.20 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.64 Total: -36.51 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.92 Total: -16.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.14 Total: 16.66 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.29 -6.33 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.551 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds