Wall clock time and date at job start Tue Mar 31 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39602 * 120.07206 * 2 1 4 4 C 1.47848 * 120.14624 * 359.97438 * 3 2 1 5 5 O 1.21549 * 119.99614 * 6.70713 * 4 3 2 6 6 N 1.34778 * 119.99707 * 186.70977 * 4 3 2 7 7 C 1.46504 * 119.99607 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46938 * 324.99369 * 7 6 4 9 9 C 1.52995 * 109.47046 * 84.99665 * 7 6 4 10 10 C 1.50698 * 109.46836 * 204.99998 * 7 6 4 11 11 H 1.08001 * 120.00171 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00073 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00284 * 179.97438 * 12 10 7 14 14 Si 1.86806 * 119.99691 * 359.97438 * 12 10 7 15 15 H 1.48493 * 109.47295 * 90.00147 * 14 12 10 16 16 H 1.48502 * 109.47100 * 210.00004 * 14 12 10 17 17 H 1.48498 * 109.47312 * 329.99852 * 14 12 10 18 18 C 1.39559 * 119.70830 * 180.29901 * 3 2 1 19 19 C 1.37980 * 119.85334 * 359.42325 * 18 3 2 20 20 C 1.38338 * 120.14611 * 0.27616 * 19 18 3 21 21 C 1.37930 * 120.07449 * 179.69646 * 2 1 3 22 22 N 1.48010 * 119.92897 * 0.02562 * 21 2 1 23 23 O 1.21800 * 120.00192 * 173.28976 * 22 21 2 24 24 O 1.21795 * 119.99750 * 353.28840 * 22 21 2 25 25 H 1.08998 * 109.47729 * 269.42569 * 1 2 3 26 26 H 1.09006 * 109.47262 * 29.42764 * 1 2 3 27 27 H 1.09000 * 109.47232 * 149.42512 * 1 2 3 28 28 H 0.96991 * 120.00219 * 0.02562 * 6 4 3 29 29 H 1.08999 * 109.47083 * 60.00264 * 9 7 6 30 30 H 1.09000 * 109.46606 * 179.97438 * 9 7 6 31 31 H 1.08995 * 109.47565 * 299.99557 * 9 7 6 32 32 H 0.96992 * 119.99887 * 179.97438 * 13 12 10 33 33 H 1.08006 * 120.07368 * 179.70147 * 18 3 2 34 34 H 1.07999 * 119.92571 * 180.25939 * 19 18 3 35 35 H 1.07997 * 119.85667 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2081 0.0000 4 6 1.4721 2.4913 -0.0006 5 8 0.2629 2.4995 0.1219 6 7 2.1436 3.6519 -0.1370 7 6 1.4160 4.9235 -0.1370 8 1 0.4501 4.7894 -0.6241 9 6 1.2000 5.3874 1.3049 10 6 2.2156 5.9597 -0.8838 11 1 3.1705 5.6975 -1.3149 12 6 1.7282 7.2426 -1.0167 13 7 2.4263 8.1471 -1.6680 14 14 0.0762 7.6959 -0.2716 15 1 0.2762 8.1818 1.1173 16 1 -0.5563 8.7660 -1.0841 17 1 -0.8045 6.5004 -0.2558 18 6 3.6020 1.1993 -0.0063 19 6 4.2813 -0.0017 -0.0005 20 6 3.5820 -1.1954 0.0058 21 6 2.1982 -1.1936 0.0063 22 7 1.4582 -2.4754 0.0125 23 8 2.0610 -3.5272 -0.1051 24 8 0.2464 -2.4784 0.1354 25 1 -0.3634 -0.0103 1.0276 26 1 -0.3634 0.8951 -0.5049 27 1 -0.3634 -0.8848 -0.5227 28 1 3.1085 3.6453 -0.2351 29 1 2.1658 5.5215 1.7919 30 1 0.6590 6.3337 1.3048 31 1 0.6216 4.6380 1.8450 32 1 2.0831 9.0495 -1.7618 33 1 4.1492 2.1305 -0.0112 34 1 5.3613 -0.0099 -0.0011 35 1 4.1184 -2.1327 0.0108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:03 Heat of formation + Delta-G solvation = -18.703212 kcal Electronic energy + Delta-G solvation = -21290.849599 eV Core-core repulsion = 17871.161220 eV Total energy + Delta-G solvation = -3419.688379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.39572 -41.56476 -39.64327 -37.83495 -37.02110 -34.71423 -33.89710 -33.36792 -31.53508 -28.89855 -27.25535 -27.13113 -25.21401 -23.46427 -22.62146 -21.63964 -20.28798 -19.70874 -18.89551 -18.72840 -17.91827 -17.51729 -17.09780 -16.61950 -16.31576 -16.00827 -15.15329 -15.04858 -14.64768 -14.51580 -14.14684 -13.86384 -13.68938 -13.47560 -13.39929 -13.15600 -13.08158 -12.79113 -12.55060 -12.30201 -12.15644 -11.79582 -11.57903 -11.30089 -10.89234 -10.77199 -10.58355 -10.30034 -9.90515 -8.39153 -6.45304 -1.27855 -0.49155 0.19868 0.30127 1.27524 1.36772 1.44612 1.61260 2.15260 2.25395 2.40468 2.97761 3.28440 3.33721 3.54283 3.61826 3.81595 4.03881 4.35471 4.41448 4.45473 4.53976 4.61194 4.67781 4.77317 4.89575 4.90348 4.96770 5.15166 5.16131 5.30715 5.39919 5.48797 5.58851 6.09678 6.49262 6.55451 6.71766 7.14177 7.29706 8.75633 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034503 B = 0.004156 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.326666 B = 6735.217679 C = 7295.751828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.028 3.972 3 C -0.150 4.150 4 C 0.546 3.454 5 O -0.569 6.569 6 N -0.688 5.688 7 C 0.242 3.758 8 H 0.026 0.974 9 C -0.157 4.157 10 C -0.533 4.533 11 H 0.062 0.938 12 C 0.033 3.967 13 N -0.931 5.931 14 Si 0.935 3.065 15 H -0.260 1.260 16 H -0.295 1.295 17 H -0.262 1.262 18 C -0.019 4.019 19 C -0.109 4.109 20 C -0.021 4.021 21 C -0.075 4.075 22 N 0.035 4.965 23 O -0.160 6.160 24 O -0.192 6.192 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.409 0.591 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.270 0.730 33 H 0.173 0.827 34 H 0.202 0.798 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -16.714 5.065 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 C -0.154 4.154 4 C 0.334 3.666 5 O -0.451 6.451 6 N -0.337 5.337 7 C 0.138 3.862 8 H 0.044 0.956 9 C -0.215 4.215 10 C -0.571 4.571 11 H 0.080 0.920 12 C -0.168 4.168 13 N -0.570 5.570 14 Si 0.762 3.238 15 H -0.186 1.186 16 H -0.222 1.222 17 H -0.187 1.187 18 C -0.038 4.038 19 C -0.127 4.127 20 C -0.040 4.040 21 C -0.159 4.159 22 N 0.548 4.452 23 O -0.377 6.377 24 O -0.398 6.398 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.246 0.754 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.190 0.810 34 H 0.219 0.781 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.622 -15.863 5.090 17.583 hybrid contribution -0.816 0.390 0.037 0.905 sum 4.806 -15.473 5.128 16.995 Atomic orbital electron populations 1.21701 0.88884 1.05620 1.04377 1.19884 0.98327 0.89936 0.89334 1.19746 0.95050 0.91447 1.09134 1.18411 0.87004 0.84259 0.76937 1.90668 1.15211 1.87274 1.51920 1.45904 1.11531 1.05162 1.71116 1.18830 0.92835 0.81155 0.93423 0.95591 1.22355 1.01575 0.99384 0.98153 1.21217 1.06420 0.94490 1.35000 0.91965 1.25493 1.00051 0.96227 0.94979 1.69956 1.39931 1.04423 1.42682 0.86073 0.80950 0.78144 0.78614 1.18556 1.22237 1.18681 1.22253 0.91441 1.01912 0.88161 1.21659 1.03279 0.88548 0.99192 1.21693 0.89236 1.03050 0.90005 1.20998 0.93510 0.81965 1.19442 1.43744 1.01126 1.03093 0.97197 1.94481 1.69914 1.20612 1.52719 1.94485 0.96849 1.93859 1.54620 0.89733 0.88981 0.88763 0.75373 0.91277 0.94073 0.93497 0.92036 0.80993 0.78069 0.79937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 7.92 71.23 0.56 -3.94 16 2 C 0.03 0.74 5.91 -19.61 -0.12 0.62 16 3 C -0.15 -3.82 5.87 -20.09 -0.12 -3.94 16 4 C 0.55 18.64 7.67 86.79 0.67 19.31 16 5 O -0.57 -23.44 12.89 -3.87 -0.05 -23.49 16 6 N -0.69 -23.98 5.02 -448.98 -2.25 -26.23 16 7 C 0.24 10.65 2.15 44.24 0.10 10.75 16 8 H 0.03 1.30 6.63 -2.39 -0.02 1.28 16 9 C -0.16 -6.33 8.97 71.98 0.65 -5.69 16 10 C -0.53 -27.17 9.31 25.60 0.24 -26.93 16 11 H 0.06 3.33 7.98 -2.91 -0.02 3.31 16 12 C 0.03 1.76 5.45 84.66 0.46 2.22 16 13 N -0.93 -53.59 13.96 21.45 0.30 -53.29 16 14 Si 0.93 42.89 24.38 68.60 1.67 44.56 16 15 H -0.26 -11.20 6.87 99.48 0.68 -10.52 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 17 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 18 C -0.02 -0.30 9.52 22.53 0.21 -0.09 16 19 C -0.11 -1.10 10.03 22.23 0.22 -0.87 16 20 C -0.02 -0.30 9.55 22.33 0.21 -0.08 16 21 C -0.08 -1.73 6.82 36.34 0.25 -1.48 16 22 N 0.04 0.94 4.45 -46.56 -0.21 0.73 16 23 O -0.16 -4.09 18.46 18.89 0.35 -3.74 16 24 O -0.19 -5.72 15.24 18.89 0.29 -5.44 16 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.09 3.18 5.33 -2.38 -0.01 3.17 16 27 H 0.09 2.74 5.41 -2.39 -0.01 2.73 16 28 H 0.41 11.57 6.61 -92.72 -0.61 10.95 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.17 1.93 6.46 -2.91 -0.02 1.91 16 34 H 0.20 0.21 8.06 -2.91 -0.02 0.19 16 35 H 0.18 1.62 7.61 -2.91 -0.02 1.60 16 Total: -1.00 -67.96 294.18 3.89 -64.06 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.46 Total: 12.95 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.33 Total: -10.12 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.16 Total: -78.79 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: 0.59 Total: -32.66 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.56 kcal Total: -67.96 3.89 -64.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.360 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds