Wall clock time and date at job start Tue Mar 31 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39600 * 120.07454 * 2 1 4 4 C 1.47840 * 120.14334 * 359.97272 * 3 2 1 5 5 O 1.21553 * 120.00503 * 353.84152 * 4 3 2 6 6 N 1.34780 * 120.00158 * 173.83204 * 4 3 2 7 7 C 1.46498 * 120.00257 * 180.02562 * 6 4 3 8 8 H 1.08993 * 109.47276 * 35.00308 * 7 6 4 9 9 C 1.52998 * 109.47121 * 274.99891 * 7 6 4 10 10 C 1.50705 * 109.46956 * 155.00158 * 7 6 4 11 11 H 1.08002 * 120.00085 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99700 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99917 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 119.99871 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.47187 * 89.99869 * 14 12 10 16 16 H 1.48502 * 109.47420 * 210.00142 * 14 12 10 17 17 H 1.48506 * 109.47278 * 330.00337 * 14 12 10 18 18 C 1.39553 * 119.71012 * 180.25567 * 3 2 1 19 19 C 1.37983 * 119.85315 * 359.44275 * 18 3 2 20 20 C 1.38333 * 120.14182 * 0.53092 * 19 18 3 21 21 C 1.37937 * 120.07330 * 179.97438 * 2 1 3 22 22 N 1.48016 * 119.92320 * 0.02562 * 21 2 1 23 23 O 1.21804 * 119.99604 * 186.87982 * 22 21 2 24 24 O 1.21794 * 120.00183 * 6.88979 * 22 21 2 25 25 H 1.08998 * 109.47376 * 90.85511 * 1 2 3 26 26 H 1.08996 * 109.47078 * 210.86400 * 1 2 3 27 27 H 1.09011 * 109.46732 * 330.86085 * 1 2 3 28 28 H 0.97003 * 119.99649 * 0.02562 * 6 4 3 29 29 H 1.08998 * 109.47408 * 179.97438 * 9 7 6 30 30 H 1.09007 * 109.47151 * 60.00116 * 9 7 6 31 31 H 1.09006 * 109.47454 * 300.00717 * 9 7 6 32 32 H 0.96999 * 119.99846 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.07296 * 179.72417 * 18 3 2 34 34 H 1.07995 * 119.92787 * 180.27780 * 19 18 3 35 35 H 1.08000 * 119.85129 * 179.74166 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2081 0.0000 4 6 1.4722 2.4912 -0.0006 5 8 0.2620 2.4989 -0.1140 6 7 2.1446 3.6525 0.1248 7 6 1.4169 4.9240 0.1248 8 1 0.4552 4.7922 0.6203 9 6 1.1892 5.3812 -1.3174 10 6 2.2226 5.9639 0.8601 11 1 3.1807 5.7036 1.2853 12 6 1.7366 7.2476 0.9900 13 7 0.5697 7.5644 0.4726 14 14 2.7348 8.5364 1.9020 15 1 3.6293 9.2376 0.9462 16 1 1.8169 9.5187 2.5327 17 1 3.5521 7.8775 2.9524 18 6 3.6021 1.1992 -0.0054 19 6 4.2813 -0.0018 0.0009 20 6 3.5820 -1.1954 0.0015 21 6 2.1982 -1.1937 0.0005 22 7 1.4580 -2.4755 0.0005 23 8 2.0604 -3.5265 0.1274 24 8 0.2467 -2.4793 -0.1265 25 1 -0.3634 -0.0153 -1.0275 26 1 -0.3633 -0.8821 0.5272 27 1 -0.3633 0.8977 0.5005 28 1 3.1104 3.6465 0.2151 29 1 0.6474 6.3270 -1.3175 30 1 0.6065 4.6291 -1.8493 31 1 2.1511 5.5130 -1.8131 32 1 0.2280 8.4677 0.5637 33 1 4.1492 2.1303 -0.0099 34 1 5.3612 -0.0101 0.0013 35 1 4.1184 -2.1327 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:07 Heat of formation + Delta-G solvation = -7.410910 kcal Electronic energy + Delta-G solvation = -21219.247758 eV Core-core repulsion = 17800.049049 eV Total energy + Delta-G solvation = -3419.198708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.32421 -40.30097 -38.29790 -36.72909 -35.18306 -33.26252 -32.60200 -31.94186 -29.20672 -27.64307 -26.12076 -25.38367 -23.89281 -22.31129 -21.22710 -20.06439 -18.94880 -18.64604 -17.65215 -17.30544 -16.33876 -16.17392 -15.61098 -15.22163 -14.74835 -14.54310 -13.84762 -13.48457 -13.27887 -12.72681 -12.60933 -12.45233 -12.33526 -12.06863 -11.83708 -11.46532 -11.19574 -11.18328 -11.06022 -10.90126 -10.63671 -10.39167 -10.33294 -9.78042 -9.30550 -9.17894 -9.08583 -8.69166 -8.12889 -6.24133 -4.34595 -0.26877 0.52789 1.19188 1.32239 2.73910 3.16416 3.23796 3.25322 3.60638 3.66979 4.20246 4.22875 4.34179 4.50598 4.62680 4.71592 5.05691 5.08899 5.30268 5.42030 5.62827 5.73473 5.83124 5.97520 6.07766 6.33871 6.60956 6.68552 6.82532 6.98717 7.23881 7.36623 7.54125 7.62130 7.75289 8.00493 8.39310 8.59585 8.83263 9.33090 10.81772 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.003923 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.595112 B = 7135.512266 C = 7640.351558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.043 3.957 3 C -0.130 4.130 4 C 0.543 3.457 5 O -0.532 6.532 6 N -0.696 5.696 7 C 0.264 3.736 8 H 0.053 0.947 9 C -0.148 4.148 10 C -0.539 4.539 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.881 5.881 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.033 4.033 19 C -0.134 4.134 20 C -0.038 4.038 21 C -0.063 4.063 22 N 0.036 4.964 23 O -0.175 6.175 24 O -0.152 6.152 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.388 0.612 29 H 0.092 0.908 30 H 0.016 0.984 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 -13.202 -1.303 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 C -0.134 4.134 4 C 0.328 3.672 5 O -0.412 6.412 6 N -0.344 5.344 7 C 0.163 3.837 8 H 0.071 0.929 9 C -0.206 4.206 10 C -0.577 4.577 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.518 5.518 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.052 4.052 19 C -0.153 4.153 20 C -0.057 4.057 21 C -0.146 4.146 22 N 0.552 4.448 23 O -0.386 6.386 24 O -0.367 6.367 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.222 0.778 29 H 0.111 0.889 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.174 -12.377 -1.394 14.373 hybrid contribution 1.021 0.387 0.446 1.179 sum 8.194 -11.990 -0.948 14.554 Atomic orbital electron populations 1.21898 0.87407 1.06971 1.05029 1.20014 0.98994 0.89007 0.87913 1.20223 0.93622 0.94147 1.05376 1.17897 0.87345 0.83319 0.78648 1.90671 1.13340 1.86519 1.50650 1.46543 1.10577 1.06974 1.70271 1.18858 0.93337 0.77424 0.94080 0.92942 1.22093 0.99337 1.02326 0.96892 1.21167 1.05400 0.94792 1.36339 0.92031 1.24879 0.95043 0.98324 0.95318 1.69889 1.17767 1.20237 1.43916 0.86427 0.79747 0.81026 0.79786 1.20479 1.20963 1.19830 1.21897 0.93275 0.99606 0.90440 1.21107 1.01108 0.90533 1.02506 1.21158 0.90803 1.00947 0.92821 1.20871 0.92419 0.83342 1.17995 1.43517 1.01159 1.02585 0.97586 1.94511 1.70158 1.20147 1.53833 1.94476 0.96200 1.93557 1.52516 0.89086 0.88938 0.86470 0.77847 0.88901 0.96500 0.95370 0.92401 0.83408 0.83115 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 7.94 36.01 0.29 -2.10 16 2 C 0.04 0.62 5.91 -104.22 -0.62 0.01 16 3 C -0.13 -1.86 5.87 -104.97 -0.62 -2.47 16 4 C 0.54 9.98 7.67 -12.33 -0.09 9.88 16 5 O -0.53 -11.47 12.87 5.32 0.07 -11.40 16 6 N -0.70 -13.16 5.02 -55.88 -0.28 -13.44 16 7 C 0.26 6.28 2.56 -69.08 -0.18 6.10 16 8 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 9 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 10 C -0.54 -13.44 8.73 -34.44 -0.30 -13.74 16 11 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 12 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 13 N -0.88 -23.79 11.32 55.43 0.63 -23.17 16 14 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 C -0.03 -0.35 9.52 -39.18 -0.37 -0.72 16 19 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 20 C -0.04 -0.38 9.55 -39.49 -0.38 -0.75 16 21 C -0.06 -0.82 6.82 -80.01 -0.55 -1.36 16 22 N 0.04 0.51 4.45 33.93 0.15 0.66 16 23 O -0.17 -2.50 18.46 -29.46 -0.54 -3.04 16 24 O -0.15 -2.31 15.24 -29.46 -0.45 -2.76 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.09 1.33 5.42 -51.93 -0.28 1.05 16 27 H 0.12 2.01 5.30 -51.92 -0.28 1.74 16 28 H 0.39 6.07 6.62 -40.82 -0.27 5.80 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.15 1.24 6.46 -52.49 -0.34 0.90 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.19 7.62 -52.49 -0.40 0.79 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -29.29 300.98 -7.38 -36.67 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.51 Total: 5.37 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.96 Total: -8.14 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.50 Total: -35.94 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.92 Total: -17.20 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.29 -7.38 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.259 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds