Wall clock time and date at job start Tue Mar 31 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39600 * 120.07454 * 2 1 4 4 C 1.47840 * 120.14334 * 359.97272 * 3 2 1 5 5 O 1.21553 * 120.00503 * 353.84152 * 4 3 2 6 6 N 1.34780 * 120.00158 * 173.83204 * 4 3 2 7 7 C 1.46498 * 120.00257 * 180.02562 * 6 4 3 8 8 H 1.08993 * 109.47276 * 35.00308 * 7 6 4 9 9 C 1.52998 * 109.47121 * 274.99891 * 7 6 4 10 10 C 1.50705 * 109.46956 * 155.00158 * 7 6 4 11 11 H 1.08002 * 120.00085 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99700 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99917 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 119.99871 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.47187 * 89.99869 * 14 12 10 16 16 H 1.48502 * 109.47420 * 210.00142 * 14 12 10 17 17 H 1.48506 * 109.47278 * 330.00337 * 14 12 10 18 18 C 1.39553 * 119.71012 * 180.25567 * 3 2 1 19 19 C 1.37983 * 119.85315 * 359.44275 * 18 3 2 20 20 C 1.38333 * 120.14182 * 0.53092 * 19 18 3 21 21 C 1.37937 * 120.07330 * 179.97438 * 2 1 3 22 22 N 1.48016 * 119.92320 * 0.02562 * 21 2 1 23 23 O 1.21804 * 119.99604 * 186.87982 * 22 21 2 24 24 O 1.21794 * 120.00183 * 6.88979 * 22 21 2 25 25 H 1.08998 * 109.47376 * 90.85511 * 1 2 3 26 26 H 1.08996 * 109.47078 * 210.86400 * 1 2 3 27 27 H 1.09011 * 109.46732 * 330.86085 * 1 2 3 28 28 H 0.97003 * 119.99649 * 0.02562 * 6 4 3 29 29 H 1.08998 * 109.47408 * 179.97438 * 9 7 6 30 30 H 1.09007 * 109.47151 * 60.00116 * 9 7 6 31 31 H 1.09006 * 109.47454 * 300.00717 * 9 7 6 32 32 H 0.96999 * 119.99846 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.07296 * 179.72417 * 18 3 2 34 34 H 1.07995 * 119.92787 * 180.27780 * 19 18 3 35 35 H 1.08000 * 119.85129 * 179.74166 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2081 0.0000 4 6 1.4722 2.4912 -0.0006 5 8 0.2620 2.4989 -0.1140 6 7 2.1446 3.6525 0.1248 7 6 1.4169 4.9240 0.1248 8 1 0.4552 4.7922 0.6203 9 6 1.1892 5.3812 -1.3174 10 6 2.2226 5.9639 0.8601 11 1 3.1807 5.7036 1.2853 12 6 1.7366 7.2476 0.9900 13 7 0.5697 7.5644 0.4726 14 14 2.7348 8.5364 1.9020 15 1 3.6293 9.2376 0.9462 16 1 1.8169 9.5187 2.5327 17 1 3.5521 7.8775 2.9524 18 6 3.6021 1.1992 -0.0054 19 6 4.2813 -0.0018 0.0009 20 6 3.5820 -1.1954 0.0015 21 6 2.1982 -1.1937 0.0005 22 7 1.4580 -2.4755 0.0005 23 8 2.0604 -3.5265 0.1274 24 8 0.2467 -2.4793 -0.1265 25 1 -0.3634 -0.0153 -1.0275 26 1 -0.3633 -0.8821 0.5272 27 1 -0.3633 0.8977 0.5005 28 1 3.1104 3.6465 0.2151 29 1 0.6474 6.3270 -1.3175 30 1 0.6065 4.6291 -1.8493 31 1 2.1511 5.5130 -1.8131 32 1 0.2280 8.4677 0.5637 33 1 4.1492 2.1303 -0.0099 34 1 5.3612 -0.0101 0.0013 35 1 4.1184 -2.1327 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:06 Heat of formation + Delta-G solvation = -25.049544 kcal Electronic energy + Delta-G solvation = -21220.012626 eV Core-core repulsion = 17800.049049 eV Total energy + Delta-G solvation = -3419.963577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.39294 -41.51224 -39.57520 -37.83124 -36.89412 -34.70985 -33.84077 -33.19387 -30.87362 -28.82347 -27.35709 -27.13632 -25.13650 -23.43565 -22.61995 -21.58767 -20.22377 -19.70153 -18.77233 -18.72617 -17.65524 -17.37280 -17.02682 -16.54838 -16.31301 -15.91530 -15.16073 -14.70857 -14.56116 -14.42449 -13.79522 -13.71681 -13.47649 -13.39473 -13.08296 -12.98475 -12.87994 -12.73099 -12.55072 -12.30397 -12.28772 -12.13950 -11.73518 -11.12040 -10.75317 -10.63948 -10.52946 -10.27350 -9.78536 -8.18570 -6.36347 -1.27091 -0.47248 0.20563 0.30647 1.46023 1.47110 1.57044 1.65828 2.20877 2.43933 2.46502 3.12844 3.29698 3.38022 3.55775 3.65234 3.82957 4.06782 4.38475 4.43344 4.59810 4.73330 4.78300 4.89053 4.89945 4.91259 5.06298 5.14642 5.19199 5.40438 5.49768 5.58994 5.65486 5.86392 6.07201 6.49707 6.69873 6.81432 7.27517 7.42580 8.87685 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.003923 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.595112 B = 7135.512266 C = 7640.351558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.025 3.975 3 C -0.149 4.149 4 C 0.540 3.460 5 O -0.575 6.575 6 N -0.691 5.691 7 C 0.271 3.729 8 H 0.002 0.998 9 C -0.135 4.135 10 C -0.547 4.547 11 H 0.078 0.922 12 C 0.016 3.984 13 N -0.917 5.917 14 Si 0.972 3.028 15 H -0.271 1.271 16 H -0.290 1.290 17 H -0.262 1.262 18 C -0.019 4.019 19 C -0.107 4.107 20 C -0.022 4.022 21 C -0.075 4.075 22 N 0.035 4.965 23 O -0.155 6.155 24 O -0.196 6.196 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.407 0.593 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.174 0.826 34 H 0.205 0.795 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.301 -14.108 -0.915 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.153 4.153 4 C 0.328 3.672 5 O -0.457 6.457 6 N -0.340 5.340 7 C 0.168 3.832 8 H 0.020 0.980 9 C -0.194 4.194 10 C -0.585 4.585 11 H 0.096 0.904 12 C -0.185 4.185 13 N -0.555 5.555 14 Si 0.797 3.203 15 H -0.196 1.196 16 H -0.216 1.216 17 H -0.186 1.186 18 C -0.038 4.038 19 C -0.125 4.125 20 C -0.041 4.041 21 C -0.159 4.159 22 N 0.548 4.452 23 O -0.374 6.374 24 O -0.401 6.401 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.244 0.756 29 H 0.085 0.915 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.192 0.808 34 H 0.222 0.778 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.606 -13.282 -1.017 17.668 hybrid contribution -0.271 0.558 0.326 0.700 sum 11.335 -12.725 -0.691 17.055 Atomic orbital electron populations 1.21692 0.89163 1.05545 1.04211 1.19885 0.98209 0.90082 0.89539 1.19806 0.95216 0.91431 1.08871 1.18508 0.87070 0.84514 0.77157 1.90666 1.15551 1.87352 1.52158 1.46170 1.11302 1.05712 1.70853 1.18416 0.91770 0.79508 0.93532 0.97987 1.21913 0.99625 1.00798 0.97038 1.21529 1.05892 0.94978 1.36092 0.90385 1.25783 0.95948 1.00621 0.96121 1.70050 1.19543 1.20604 1.45345 0.85346 0.78143 0.78142 0.78713 1.19608 1.21622 1.18620 1.22251 0.91248 1.02003 0.88255 1.21675 1.03297 0.88445 0.99099 1.21698 0.89105 1.03134 0.90121 1.21004 0.93556 0.81873 1.19443 1.43750 1.01128 1.03097 0.97197 1.94471 1.69892 1.20697 1.52376 1.94492 0.96916 1.93834 1.54879 0.90020 0.88713 0.89180 0.75642 0.91464 0.96913 0.93752 0.92562 0.80833 0.77832 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 7.94 71.24 0.57 -4.35 16 2 C 0.03 0.73 5.91 -19.61 -0.12 0.61 16 3 C -0.15 -4.11 5.87 -20.09 -0.12 -4.22 16 4 C 0.54 20.27 7.67 86.78 0.67 20.94 16 5 O -0.57 -26.51 12.87 -3.88 -0.05 -26.56 16 6 N -0.69 -25.96 5.02 -448.99 -2.25 -28.22 16 7 C 0.27 13.21 2.56 44.25 0.11 13.32 16 8 H 0.00 0.13 7.58 -2.39 -0.02 0.11 16 9 C -0.13 -6.49 9.26 71.98 0.67 -5.83 16 10 C -0.55 -27.11 8.73 25.60 0.22 -26.88 16 11 H 0.08 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.02 0.80 5.30 84.66 0.45 1.25 16 13 N -0.92 -50.86 11.32 21.45 0.24 -50.62 16 14 Si 0.97 39.94 29.54 68.60 2.03 41.97 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 C -0.02 -0.32 9.52 22.53 0.21 -0.10 16 19 C -0.11 -1.12 10.03 22.23 0.22 -0.89 16 20 C -0.02 -0.32 9.55 22.33 0.21 -0.11 16 21 C -0.07 -1.81 6.82 36.34 0.25 -1.56 16 22 N 0.04 0.98 4.45 -46.55 -0.21 0.77 16 23 O -0.16 -4.09 18.46 18.88 0.35 -3.75 16 24 O -0.20 -6.14 15.24 18.89 0.29 -5.86 16 25 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.09 2.97 5.42 -2.39 -0.01 2.96 16 27 H 0.09 3.43 5.30 -2.38 -0.01 3.42 16 28 H 0.41 11.84 6.62 -92.71 -0.61 11.23 16 29 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 30 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.17 1.99 6.46 -2.91 -0.02 1.97 16 34 H 0.20 0.17 8.06 -2.91 -0.02 0.14 16 35 H 0.18 1.69 7.62 -2.91 -0.02 1.67 16 Total: -1.00 -68.36 300.98 4.28 -64.09 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.53 Total: 16.01 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.35 Total: -7.83 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.22 Total: -78.06 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: 0.59 Total: -36.16 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -68.36 4.28 -64.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.037 kcal (2) G-P(sol) polarization free energy of solvation -68.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds