Wall clock time and date at job start Tue Mar 31 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38379 * 119.85835 * 2 1 4 4 C 1.37941 * 120.14730 * 180.02562 * 3 2 1 5 5 C 1.39597 * 119.84712 * 359.97438 * 4 3 2 6 6 C 1.47851 * 120.13657 * 180.02562 * 5 4 3 7 7 O 1.21559 * 119.99654 * 179.97438 * 6 5 4 8 8 N 1.34774 * 120.00391 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99866 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47287 * 324.99478 * 9 8 6 11 11 C 1.52998 * 109.47153 * 85.00291 * 9 8 6 12 12 C 1.50699 * 109.47061 * 205.00219 * 9 8 6 13 13 H 1.08008 * 119.99809 * 333.48432 * 12 9 8 14 14 C 1.37877 * 120.00513 * 153.49030 * 12 9 8 15 15 N 1.31510 * 120.00036 * 174.28083 * 14 12 9 16 16 Si 1.86793 * 119.99612 * 354.28306 * 14 12 9 17 17 H 1.48506 * 109.47110 * 275.37375 * 16 14 12 18 18 H 1.48504 * 109.47596 * 35.37369 * 16 14 12 19 19 H 1.48507 * 109.47222 * 155.37313 * 16 14 12 20 20 C 1.39553 * 119.71665 * 0.27585 * 5 4 3 21 21 C 1.37976 * 119.85107 * 359.49488 * 20 5 4 22 22 N 1.48010 * 119.92713 * 180.22877 * 21 20 5 23 23 O 1.21797 * 120.00331 * 6.48116 * 22 21 20 24 24 O 1.21811 * 120.00166 * 186.47608 * 22 21 20 25 25 H 1.08996 * 109.47337 * 96.90290 * 1 2 3 26 26 H 1.08997 * 109.47764 * 216.91141 * 1 2 3 27 27 H 1.09003 * 109.46616 * 336.90558 * 1 2 3 28 28 H 1.07993 * 119.92886 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.07317 * 179.97438 * 4 3 2 30 30 H 0.96992 * 119.99834 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47088 * 174.88971 * 11 9 8 32 32 H 1.09009 * 109.46911 * 294.88545 * 11 9 8 33 33 H 1.08999 * 109.47530 * 54.88665 * 11 9 8 34 34 H 0.97007 * 119.99756 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.07162 * 179.72194 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2071 -0.0005 5 6 4.2761 -0.0002 -0.0005 6 6 5.7546 -0.0002 -0.0005 7 8 6.3624 -1.0530 -0.0001 8 7 6.4286 1.1669 0.0000 9 6 7.8936 1.1667 0.0006 10 1 8.2567 0.3248 0.5900 11 6 8.4041 1.0414 -1.4363 12 6 8.3958 2.4542 0.6016 13 1 7.7868 3.3451 0.5561 14 6 9.6328 2.4951 1.2093 15 7 10.1195 3.6408 1.6334 16 14 10.6171 0.9230 1.4301 17 1 10.1794 0.2351 2.6712 18 1 10.3932 0.0308 0.2643 19 1 12.0615 1.2534 1.5303 20 6 3.5753 -1.2070 -0.0058 21 6 2.1955 -1.1999 -0.0005 22 7 1.4505 -2.4788 -0.0010 23 8 2.0500 -3.5329 0.1130 24 8 0.2378 -2.4772 -0.1152 25 1 -0.3634 -0.1235 -1.0202 26 1 -0.3634 -0.8216 0.6172 27 1 -0.3633 0.9454 0.4031 28 1 1.6524 2.1333 0.0004 29 1 4.1117 2.1443 -0.0010 30 1 5.9437 2.0069 0.0000 31 1 9.4903 1.1323 -1.4451 32 1 8.1176 0.0703 -1.8402 33 1 7.9683 1.8320 -2.0471 34 1 10.9899 3.6696 2.0606 35 1 4.1117 -2.1443 -0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:15 Heat of formation + Delta-G solvation = -16.920891 kcal Electronic energy + Delta-G solvation = -20973.988226 eV Core-core repulsion = 17554.377134 eV Total energy + Delta-G solvation = -3419.611092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.38946 -40.27127 -38.58545 -36.77514 -35.18416 -33.51365 -32.54227 -32.08547 -30.00639 -28.16751 -26.22020 -25.39104 -23.30695 -22.87604 -21.35024 -20.10830 -19.16877 -18.72438 -17.72657 -17.40880 -16.58838 -16.22926 -15.64607 -15.14849 -14.72236 -14.60324 -14.14105 -14.03570 -13.42540 -13.05514 -12.77166 -12.57320 -12.55915 -12.39185 -12.01559 -11.64676 -11.50706 -11.27820 -11.24177 -10.97242 -10.84147 -10.60701 -9.99935 -9.91465 -9.59428 -9.39178 -9.33785 -8.81063 -8.36564 -6.33619 -4.38090 -0.33081 0.40987 1.14233 1.24221 2.62262 3.18912 3.27782 3.34203 3.49829 3.58404 4.05058 4.11760 4.23681 4.47228 4.58147 4.59555 4.91918 5.05330 5.09652 5.22826 5.28661 5.50559 5.66498 5.69159 5.75607 5.93303 6.20158 6.34802 6.39351 6.53770 6.77791 6.99901 7.18649 7.34678 7.53988 7.92225 8.32909 8.57406 8.67750 9.27084 10.77866 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.003985 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.495828 B = 7024.160624 C = 7561.872833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.002 4.002 3 C -0.129 4.129 4 C -0.032 4.032 5 C -0.126 4.126 6 C 0.544 3.456 7 O -0.543 6.543 8 N -0.691 5.691 9 C 0.234 3.766 10 H 0.051 0.949 11 C -0.151 4.151 12 C -0.537 4.537 13 H 0.079 0.921 14 C 0.083 3.917 15 N -0.887 5.887 16 Si 0.871 3.129 17 H -0.272 1.272 18 H -0.258 1.258 19 H -0.284 1.284 20 C 0.002 3.998 21 C -0.058 4.058 22 N 0.034 4.966 23 O -0.162 6.162 24 O -0.162 6.162 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.393 0.607 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.269 0.731 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.379 -3.179 -3.816 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.004 4.004 3 C -0.147 4.147 4 C -0.051 4.051 5 C -0.130 4.130 6 C 0.328 3.672 7 O -0.422 6.422 8 N -0.339 5.339 9 C 0.131 3.869 10 H 0.069 0.931 11 C -0.210 4.210 12 C -0.575 4.575 13 H 0.097 0.903 14 C -0.122 4.122 15 N -0.522 5.522 16 Si 0.697 3.303 17 H -0.198 1.198 18 H -0.182 1.182 19 H -0.210 1.210 20 C -0.018 4.018 21 C -0.142 4.142 22 N 0.551 4.449 23 O -0.377 6.377 24 O -0.375 6.375 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.228 0.772 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.371 -3.199 -3.720 17.091 hybrid contribution 0.276 -0.543 0.205 0.643 sum -16.095 -3.743 -3.515 16.894 Atomic orbital electron populations 1.21353 0.88346 1.04657 1.04693 1.20053 0.98172 0.90473 0.91718 1.21103 0.93849 0.97286 1.02463 1.21915 0.94455 0.98446 0.90257 1.20245 0.95363 0.92520 1.04884 1.17997 0.85582 0.85330 0.78275 1.90775 1.69252 1.31194 1.51019 1.46458 1.09694 1.06605 1.71141 1.19181 0.74943 0.98782 0.93946 0.93105 1.22295 1.01258 0.98855 0.98563 1.20945 1.03605 0.94624 1.38304 0.90270 1.24866 0.97072 0.96265 0.93959 1.69871 1.18720 1.24890 1.38763 0.86959 0.79328 0.83937 0.80043 1.19760 1.18214 1.21011 1.21107 0.90504 1.00883 0.89334 1.20817 0.92168 0.83518 1.17671 1.43515 1.01033 1.02737 0.97594 1.94581 1.70416 1.19441 1.53263 1.94445 0.96273 1.93727 1.53063 0.89146 0.88249 0.90593 0.82963 0.83166 0.77182 0.92331 0.95097 0.93450 0.92097 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.67 36.00 0.31 -0.69 16 2 C 0.00 -0.02 5.89 -104.53 -0.62 -0.64 16 3 C -0.13 -1.06 9.65 -39.64 -0.38 -1.44 16 4 C -0.03 -0.32 9.54 -39.18 -0.37 -0.70 16 5 C -0.13 -1.73 5.87 -104.97 -0.62 -2.34 16 6 C 0.54 9.78 7.74 -12.33 -0.10 9.69 16 7 O -0.54 -11.80 16.01 5.31 0.09 -11.71 16 8 N -0.69 -12.69 5.02 -55.88 -0.28 -12.97 16 9 C 0.23 5.25 2.12 -69.08 -0.15 5.11 16 10 H 0.05 1.26 5.23 -51.93 -0.27 0.99 16 11 C -0.15 -3.15 9.15 37.16 0.34 -2.81 16 12 C -0.54 -13.67 9.06 -34.44 -0.31 -13.99 16 13 H 0.08 2.10 8.03 -52.48 -0.42 1.68 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 15 N -0.89 -25.18 13.96 55.43 0.77 -24.41 16 16 Si 0.87 20.70 26.28 -169.99 -4.47 16.23 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.26 -5.99 6.30 56.52 0.36 -5.63 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.00 0.02 9.10 -39.19 -0.36 -0.33 16 21 C -0.06 -0.73 6.82 -80.01 -0.55 -1.27 16 22 N 0.03 0.47 4.45 33.93 0.15 0.63 16 23 O -0.16 -2.48 18.46 -29.46 -0.54 -3.02 16 24 O -0.16 -2.11 15.33 -29.46 -0.45 -2.56 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.85 5.84 -51.93 -0.30 0.55 16 27 H 0.08 0.39 8.03 -51.93 -0.42 -0.03 16 28 H 0.15 0.75 8.05 -52.49 -0.42 0.32 16 29 H 0.15 1.22 6.41 -52.49 -0.34 0.88 16 30 H 0.39 6.01 6.61 -40.82 -0.27 5.74 16 31 H 0.06 1.25 7.01 -51.93 -0.36 0.89 16 32 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.17 2.42 7.21 -52.49 -0.38 2.04 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -31.04 304.26 -6.67 -37.71 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.63 Total: 2.80 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.89 Total: -7.28 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.64 Total: -36.75 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.91 Total: -17.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.47 Total: 16.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.04 -6.67 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.792 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds