Wall clock time and date at job start Tue Mar 31 2020 00:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38379 * 119.85835 * 2 1 4 4 C 1.37941 * 120.14730 * 180.02562 * 3 2 1 5 5 C 1.39597 * 119.84712 * 359.97438 * 4 3 2 6 6 C 1.47851 * 120.13657 * 180.02562 * 5 4 3 7 7 O 1.21559 * 119.99654 * 179.97438 * 6 5 4 8 8 N 1.34774 * 120.00391 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99866 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47287 * 324.99478 * 9 8 6 11 11 C 1.52998 * 109.47153 * 85.00291 * 9 8 6 12 12 C 1.50699 * 109.47061 * 205.00219 * 9 8 6 13 13 H 1.08008 * 119.99809 * 333.48432 * 12 9 8 14 14 C 1.37877 * 120.00513 * 153.49030 * 12 9 8 15 15 N 1.31510 * 120.00036 * 174.28083 * 14 12 9 16 16 Si 1.86793 * 119.99612 * 354.28306 * 14 12 9 17 17 H 1.48506 * 109.47110 * 275.37375 * 16 14 12 18 18 H 1.48504 * 109.47596 * 35.37369 * 16 14 12 19 19 H 1.48507 * 109.47222 * 155.37313 * 16 14 12 20 20 C 1.39553 * 119.71665 * 0.27585 * 5 4 3 21 21 C 1.37976 * 119.85107 * 359.49488 * 20 5 4 22 22 N 1.48010 * 119.92713 * 180.22877 * 21 20 5 23 23 O 1.21797 * 120.00331 * 6.48116 * 22 21 20 24 24 O 1.21811 * 120.00166 * 186.47608 * 22 21 20 25 25 H 1.08996 * 109.47337 * 96.90290 * 1 2 3 26 26 H 1.08997 * 109.47764 * 216.91141 * 1 2 3 27 27 H 1.09003 * 109.46616 * 336.90558 * 1 2 3 28 28 H 1.07993 * 119.92886 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.07317 * 179.97438 * 4 3 2 30 30 H 0.96992 * 119.99834 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47088 * 174.88971 * 11 9 8 32 32 H 1.09009 * 109.46911 * 294.88545 * 11 9 8 33 33 H 1.08999 * 109.47530 * 54.88665 * 11 9 8 34 34 H 0.97007 * 119.99756 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.07162 * 179.72194 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2071 -0.0005 5 6 4.2761 -0.0002 -0.0005 6 6 5.7546 -0.0002 -0.0005 7 8 6.3624 -1.0530 -0.0001 8 7 6.4286 1.1669 0.0000 9 6 7.8936 1.1667 0.0006 10 1 8.2567 0.3248 0.5900 11 6 8.4041 1.0414 -1.4363 12 6 8.3958 2.4542 0.6016 13 1 7.7868 3.3451 0.5561 14 6 9.6328 2.4951 1.2093 15 7 10.1195 3.6408 1.6334 16 14 10.6171 0.9230 1.4301 17 1 10.1794 0.2351 2.6712 18 1 10.3932 0.0308 0.2643 19 1 12.0615 1.2534 1.5303 20 6 3.5753 -1.2070 -0.0058 21 6 2.1955 -1.1999 -0.0005 22 7 1.4505 -2.4788 -0.0010 23 8 2.0500 -3.5329 0.1130 24 8 0.2378 -2.4772 -0.1152 25 1 -0.3634 -0.1235 -1.0202 26 1 -0.3634 -0.8216 0.6172 27 1 -0.3633 0.9454 0.4031 28 1 1.6524 2.1333 0.0004 29 1 4.1117 2.1443 -0.0010 30 1 5.9437 2.0069 0.0000 31 1 9.4903 1.1323 -1.4451 32 1 8.1176 0.0703 -1.8402 33 1 7.9683 1.8320 -2.0471 34 1 10.9899 3.6696 2.0606 35 1 4.1117 -2.1443 -0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:13 Heat of formation + Delta-G solvation = -36.946696 kcal Electronic energy + Delta-G solvation = -20974.856610 eV Core-core repulsion = 17554.377134 eV Total energy + Delta-G solvation = -3420.479476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -43.42372 -41.44362 -39.81420 -37.83598 -36.88969 -34.72198 -34.13084 -33.09089 -31.59845 -29.05700 -27.36920 -27.19396 -24.41243 -23.79873 -22.69702 -21.63672 -20.49171 -19.79843 -18.91910 -18.77110 -18.03049 -17.53353 -16.78799 -16.41316 -16.08094 -16.00160 -15.24256 -14.97859 -14.85757 -14.59266 -14.28204 -13.80523 -13.52600 -13.39784 -13.18709 -13.10076 -12.95419 -12.86553 -12.55117 -12.40300 -12.32325 -11.89110 -11.74492 -11.29829 -11.12662 -10.84744 -10.79239 -10.30646 -9.94199 -8.40709 -6.46313 -1.29639 -0.56324 0.19232 0.26371 1.28197 1.34514 1.43457 1.55236 2.13797 2.25941 2.39768 2.97750 3.21990 3.28781 3.58872 3.64429 3.68394 3.97673 4.33567 4.40276 4.51038 4.65067 4.70432 4.72558 4.77871 4.83099 4.99105 5.01838 5.05327 5.13959 5.30915 5.41328 5.47613 5.57515 6.07301 6.46459 6.56080 6.70334 7.13841 7.27140 8.73681 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.003985 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.495828 B = 7024.160624 C = 7561.872833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.012 3.988 3 C -0.107 4.107 4 C -0.018 4.018 5 C -0.144 4.144 6 C 0.545 3.455 7 O -0.589 6.589 8 N -0.687 5.687 9 C 0.236 3.764 10 H 0.028 0.972 11 C -0.145 4.145 12 C -0.528 4.528 13 H 0.065 0.935 14 C 0.038 3.962 15 N -0.926 5.926 16 Si 0.917 3.083 17 H -0.277 1.277 18 H -0.253 1.253 19 H -0.278 1.278 20 C -0.011 4.011 21 C -0.073 4.073 22 N 0.034 4.966 23 O -0.230 6.230 24 O -0.123 6.123 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.204 0.796 29 H 0.175 0.825 30 H 0.410 0.590 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.271 0.729 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.129 -1.448 -4.418 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.148 4.148 6 C 0.332 3.668 7 O -0.471 6.471 8 N -0.336 5.336 9 C 0.132 3.868 10 H 0.046 0.954 11 C -0.204 4.204 12 C -0.566 4.566 13 H 0.084 0.916 14 C -0.163 4.163 15 N -0.565 5.565 16 Si 0.742 3.258 17 H -0.203 1.203 18 H -0.177 1.177 19 H -0.203 1.203 20 C -0.031 4.031 21 C -0.156 4.156 22 N 0.548 4.452 23 O -0.428 6.428 24 O -0.349 6.349 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.221 0.779 29 H 0.192 0.808 30 H 0.248 0.752 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.031 -1.548 -4.316 19.575 hybrid contribution 0.868 -0.955 0.364 1.340 sum -18.163 -2.502 -3.952 18.756 Atomic orbital electron populations 1.21486 0.86123 1.06230 1.05336 1.20558 0.99703 0.89589 0.89172 1.21631 0.92848 0.98404 0.99566 1.22214 0.95552 0.97572 0.88317 1.19793 0.92549 0.94103 1.08311 1.18515 0.87439 0.84177 0.76671 1.90747 1.70773 1.32711 1.52902 1.46119 1.08218 1.07795 1.71505 1.18911 0.77313 0.96232 0.94325 0.95441 1.22191 1.00808 0.99725 0.97664 1.21145 1.03040 0.95232 1.37184 0.91641 1.25464 0.98296 0.98215 0.94302 1.69955 1.19445 1.26471 1.40596 0.86223 0.78522 0.81261 0.79799 1.20266 1.17666 1.20326 1.20900 0.91374 1.00172 0.90661 1.20924 0.91706 0.83664 1.19345 1.43730 1.01092 1.03120 0.97269 1.94605 1.70682 1.20450 1.57027 1.94398 0.96349 1.93803 1.50359 0.87901 0.89443 0.86996 0.77934 0.80755 0.75245 0.93116 0.94737 0.91693 0.91991 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.67 71.23 0.62 -0.72 16 2 C 0.01 0.18 5.89 -19.81 -0.12 0.06 16 3 C -0.11 -1.16 9.65 22.23 0.21 -0.94 16 4 C -0.02 -0.29 9.54 22.53 0.21 -0.08 16 5 C -0.14 -3.79 5.87 -20.09 -0.12 -3.91 16 6 C 0.54 19.60 7.74 86.79 0.67 20.27 16 7 O -0.59 -26.47 16.01 -3.90 -0.06 -26.53 16 8 N -0.69 -24.61 5.02 -448.97 -2.25 -26.86 16 9 C 0.24 10.52 2.12 44.24 0.09 10.62 16 10 H 0.03 1.37 5.23 -2.39 -0.01 1.36 16 11 C -0.15 -5.94 9.15 71.98 0.66 -5.28 16 12 C -0.53 -26.76 9.06 25.60 0.23 -26.53 16 13 H 0.07 3.45 8.03 -2.91 -0.02 3.42 16 14 C 0.04 2.05 5.47 84.66 0.46 2.52 16 15 N -0.93 -53.00 13.96 21.45 0.30 -52.70 16 16 Si 0.92 42.96 26.28 68.60 1.80 44.76 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.25 -11.51 6.30 99.48 0.63 -10.89 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.01 -0.30 9.10 22.52 0.21 -0.10 16 21 C -0.07 -1.73 6.82 36.34 0.25 -1.48 16 22 N 0.03 0.94 4.45 -46.56 -0.21 0.73 16 23 O -0.23 -7.48 18.46 18.89 0.35 -7.13 16 24 O -0.12 -2.99 15.33 18.87 0.29 -2.70 16 25 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.15 5.84 -2.39 -0.01 1.14 16 27 H 0.11 0.38 8.03 -2.39 -0.02 0.36 16 28 H 0.20 0.31 8.05 -2.91 -0.02 0.28 16 29 H 0.18 1.99 6.41 -2.91 -0.02 1.97 16 30 H 0.41 11.69 6.61 -92.71 -0.61 11.08 16 31 H 0.05 2.12 7.01 -2.39 -0.02 2.11 16 32 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 35 H 0.14 4.52 7.21 -2.91 -0.02 4.50 16 Total: -1.00 -70.55 304.26 4.05 -66.50 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.45 Total: 9.49 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 3.38 Total: -5.56 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.16 Total: -78.83 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: 0.58 Total: -36.36 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.80 Total: 44.76 kcal Total: -70.55 4.05 -66.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.555 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds