Wall clock time and date at job start Tue Mar 31 2020 00:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38387 * 119.85527 * 2 1 4 4 C 1.37932 * 120.14409 * 179.97438 * 3 2 1 5 5 C 1.39595 * 119.85802 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.14550 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99984 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99976 * 359.97438 * 6 5 4 9 9 C 1.46504 * 119.99855 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47026 * 35.00615 * 9 8 6 11 11 C 1.52994 * 109.47299 * 274.99839 * 9 8 6 12 12 C 1.50707 * 109.46879 * 155.00153 * 9 8 6 13 13 H 1.07997 * 119.99948 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99882 * 180.02562 * 12 9 8 15 15 N 1.31520 * 120.00032 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99962 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47096 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46650 * 120.00272 * 16 14 12 19 19 H 1.48494 * 109.47052 * 239.99759 * 16 14 12 20 20 C 1.39559 * 119.70704 * 0.02562 * 5 4 3 21 21 C 1.37973 * 119.85566 * 359.70663 * 20 5 4 22 22 N 1.48010 * 119.93027 * 180.31042 * 21 20 5 23 23 O 1.21804 * 120.00053 * 6.45710 * 22 21 20 24 24 O 1.21804 * 119.99907 * 186.44632 * 22 21 20 25 25 H 1.08996 * 109.46970 * 96.96813 * 1 2 3 26 26 H 1.09001 * 109.47155 * 336.96421 * 1 2 3 27 27 H 1.09005 * 109.46922 * 216.96787 * 1 2 3 28 28 H 1.07995 * 119.92373 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.07180 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00135 * 0.02562 * 8 6 5 31 31 H 1.08996 * 109.46897 * 59.99971 * 11 9 8 32 32 H 1.08998 * 109.47262 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47715 * 300.00354 * 11 9 8 34 34 H 0.97000 * 120.00029 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.06912 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7547 0.0001 0.0017 7 8 6.3625 -1.0526 0.0012 8 7 6.4285 1.1672 0.0022 9 6 7.8936 1.1672 0.0039 10 1 8.2576 0.3254 -0.5850 11 6 8.4019 1.0419 1.4414 12 6 8.3966 2.4549 -0.5963 13 1 7.6951 3.1986 -0.9445 14 6 9.7522 2.6830 -0.7017 15 7 10.6064 1.7771 -0.2781 16 14 10.3757 4.2788 -1.4463 17 1 9.2212 5.1249 -1.8415 18 1 11.2000 5.0030 -0.4456 19 1 11.2017 3.9771 -2.6429 20 6 3.5754 -1.2068 -0.0006 21 6 2.1957 -1.1998 0.0045 22 7 1.4507 -2.4788 0.0103 23 8 2.0503 -3.5323 0.1293 24 8 0.2380 -2.4777 -0.1036 25 1 -0.3633 -0.1247 -1.0200 26 1 -0.3633 0.9457 0.4021 27 1 -0.3633 -0.8211 0.6180 28 1 1.6523 2.1334 -0.0004 29 1 4.1116 2.1445 0.0010 30 1 5.9435 2.0073 0.0022 31 1 8.0381 0.1106 1.8755 32 1 9.4919 1.0414 1.4427 33 1 8.0379 1.8837 2.0304 34 1 11.5602 1.9378 -0.3519 35 1 4.1119 -2.1441 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:18 Heat of formation + Delta-G solvation = -17.562605 kcal Electronic energy + Delta-G solvation = -20904.803252 eV Core-core repulsion = 17485.164333 eV Total energy + Delta-G solvation = -3419.638919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.35398 -40.19112 -38.45968 -36.73923 -35.05173 -33.47238 -32.55343 -32.00438 -29.30029 -28.04028 -26.13536 -25.37334 -23.24692 -22.83303 -21.37468 -20.08237 -19.00915 -18.68363 -17.69402 -17.32848 -16.23832 -16.16092 -15.42685 -15.12910 -14.63328 -14.58440 -14.17571 -13.98805 -13.31872 -13.03940 -12.71706 -12.52592 -12.40037 -11.98545 -11.80838 -11.47021 -11.21214 -11.20680 -11.07439 -10.89425 -10.80190 -10.42676 -10.35464 -9.87610 -9.47410 -9.31845 -9.17132 -8.68548 -8.14608 -6.23485 -4.33944 -0.29295 0.46371 1.17927 1.28028 2.69021 3.16408 3.24195 3.26294 3.61716 3.69297 4.08639 4.15181 4.25587 4.51337 4.62799 4.67348 5.01008 5.09446 5.12100 5.25183 5.32707 5.55532 5.70210 5.73751 5.79115 5.98267 6.38444 6.68996 6.81424 6.99836 7.22273 7.37546 7.54923 7.57618 7.76140 8.01170 8.39964 8.60135 8.83518 9.33719 10.82535 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.003692 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.175201 B = 7582.477970 C = 8166.799315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.004 4.004 3 C -0.129 4.129 4 C -0.034 4.034 5 C -0.124 4.124 6 C 0.542 3.458 7 O -0.539 6.539 8 N -0.696 5.696 9 C 0.263 3.737 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.903 3.097 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.001 3.999 21 C -0.058 4.058 22 N 0.034 4.966 23 O -0.162 6.162 24 O -0.163 6.163 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.388 0.612 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.836 1.387 1.190 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.006 4.006 3 C -0.148 4.148 4 C -0.053 4.053 5 C -0.128 4.128 6 C 0.326 3.674 7 O -0.418 6.418 8 N -0.344 5.344 9 C 0.162 3.838 10 H 0.070 0.930 11 C -0.207 4.207 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.019 4.019 21 C -0.141 4.141 22 N 0.551 4.449 23 O -0.377 6.377 24 O -0.376 6.376 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.222 0.778 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.786 1.221 1.202 16.873 hybrid contribution 0.069 0.976 -0.381 1.049 sum -16.717 2.197 0.821 16.881 Atomic orbital electron populations 1.21350 0.88396 1.04582 1.04692 1.20038 0.98125 0.90485 0.91955 1.21087 0.93853 0.97234 1.02588 1.21896 0.94402 0.98452 0.90514 1.20332 0.95656 0.92429 1.04400 1.17928 0.85374 0.85456 0.78625 1.90785 1.69134 1.31147 1.50770 1.46518 1.10565 1.06212 1.71087 1.18875 0.72057 0.98530 0.94342 0.92958 1.22091 1.04663 0.96848 0.97069 1.21201 0.92178 1.02396 1.41836 0.91951 1.24890 0.96565 0.97129 0.95033 1.69905 1.02488 1.33894 1.45519 0.86367 0.78905 0.82752 0.78917 1.19730 1.20788 1.20779 1.21122 0.90466 1.00960 0.89331 1.20821 0.92185 0.83484 1.17638 1.43520 1.01023 1.02755 0.97587 1.94584 1.70402 1.19497 1.53173 1.94438 0.96305 1.93694 1.53145 0.89181 0.90670 0.88251 0.83070 0.83302 0.77810 0.96504 0.88880 0.95321 0.92452 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.68 36.00 0.31 -0.72 16 2 C 0.00 -0.04 5.89 -104.53 -0.62 -0.66 16 3 C -0.13 -1.09 9.65 -39.64 -0.38 -1.48 16 4 C -0.03 -0.35 9.54 -39.19 -0.37 -0.73 16 5 C -0.12 -1.77 5.87 -104.97 -0.62 -2.39 16 6 C 0.54 10.26 7.74 -12.33 -0.10 10.17 16 7 O -0.54 -12.42 16.01 5.32 0.09 -12.33 16 8 N -0.70 -13.39 5.02 -55.88 -0.28 -13.67 16 9 C 0.26 6.36 2.56 -69.08 -0.18 6.19 16 10 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 11 C -0.15 -3.52 9.26 37.15 0.34 -3.18 16 12 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.88 -23.99 11.32 55.43 0.63 -23.36 16 16 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.00 0.02 9.10 -39.19 -0.36 -0.34 16 21 C -0.06 -0.74 6.82 -80.01 -0.55 -1.29 16 22 N 0.03 0.49 4.45 33.93 0.15 0.64 16 23 O -0.16 -2.53 18.46 -29.46 -0.54 -3.07 16 24 O -0.16 -2.17 15.33 -29.46 -0.45 -2.62 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 27 H 0.10 0.87 5.83 -51.93 -0.30 0.57 16 28 H 0.15 0.77 8.05 -52.49 -0.42 0.34 16 29 H 0.15 1.24 6.41 -52.49 -0.34 0.90 16 30 H 0.39 6.12 6.58 -40.82 -0.27 5.85 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.17 2.53 7.21 -52.49 -0.38 2.15 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -30.33 306.82 -7.35 -37.69 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.64 Total: 3.93 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.90 Total: -6.60 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.50 Total: -36.40 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.91 Total: -18.02 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.33 -7.35 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.124 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds