Wall clock time and date at job start Tue Mar 31 2020 00:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38387 * 119.85527 * 2 1 4 4 C 1.37932 * 120.14409 * 179.97438 * 3 2 1 5 5 C 1.39595 * 119.85802 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.14550 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99984 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99976 * 359.97438 * 6 5 4 9 9 C 1.46504 * 119.99855 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47026 * 35.00615 * 9 8 6 11 11 C 1.52994 * 109.47299 * 274.99839 * 9 8 6 12 12 C 1.50707 * 109.46879 * 155.00153 * 9 8 6 13 13 H 1.07997 * 119.99948 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99882 * 180.02562 * 12 9 8 15 15 N 1.31520 * 120.00032 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99962 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47096 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46650 * 120.00272 * 16 14 12 19 19 H 1.48494 * 109.47052 * 239.99759 * 16 14 12 20 20 C 1.39559 * 119.70704 * 0.02562 * 5 4 3 21 21 C 1.37973 * 119.85566 * 359.70663 * 20 5 4 22 22 N 1.48010 * 119.93027 * 180.31042 * 21 20 5 23 23 O 1.21804 * 120.00053 * 6.45710 * 22 21 20 24 24 O 1.21804 * 119.99907 * 186.44632 * 22 21 20 25 25 H 1.08996 * 109.46970 * 96.96813 * 1 2 3 26 26 H 1.09001 * 109.47155 * 336.96421 * 1 2 3 27 27 H 1.09005 * 109.46922 * 216.96787 * 1 2 3 28 28 H 1.07995 * 119.92373 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.07180 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00135 * 0.02562 * 8 6 5 31 31 H 1.08996 * 109.46897 * 59.99971 * 11 9 8 32 32 H 1.08998 * 109.47262 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47715 * 300.00354 * 11 9 8 34 34 H 0.97000 * 120.00029 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.06912 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7547 0.0001 0.0017 7 8 6.3625 -1.0526 0.0012 8 7 6.4285 1.1672 0.0022 9 6 7.8936 1.1672 0.0039 10 1 8.2576 0.3254 -0.5850 11 6 8.4019 1.0419 1.4414 12 6 8.3966 2.4549 -0.5963 13 1 7.6951 3.1986 -0.9445 14 6 9.7522 2.6830 -0.7017 15 7 10.6064 1.7771 -0.2781 16 14 10.3757 4.2788 -1.4463 17 1 9.2212 5.1249 -1.8415 18 1 11.2000 5.0030 -0.4456 19 1 11.2017 3.9771 -2.6429 20 6 3.5754 -1.2068 -0.0006 21 6 2.1957 -1.1998 0.0045 22 7 1.4507 -2.4788 0.0103 23 8 2.0503 -3.5323 0.1293 24 8 0.2380 -2.4777 -0.1036 25 1 -0.3633 -0.1247 -1.0200 26 1 -0.3633 0.9457 0.4021 27 1 -0.3633 -0.8211 0.6180 28 1 1.6523 2.1334 -0.0004 29 1 4.1116 2.1445 0.0010 30 1 5.9435 2.0073 0.0022 31 1 8.0381 0.1106 1.8755 32 1 9.4919 1.0414 1.4427 33 1 8.0379 1.8837 2.0304 34 1 11.5602 1.9378 -0.3519 35 1 4.1119 -2.1441 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:17 Heat of formation + Delta-G solvation = -36.516144 kcal Electronic energy + Delta-G solvation = -20905.625139 eV Core-core repulsion = 17485.164333 eV Total energy + Delta-G solvation = -3420.460806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.42612 -41.40938 -39.77202 -37.83592 -36.85778 -34.74617 -34.01217 -33.04800 -30.99680 -29.01853 -27.40518 -27.17237 -24.42316 -23.79183 -22.81904 -21.63750 -20.37353 -19.79829 -18.78652 -18.71246 -17.72210 -17.48333 -16.75840 -16.44574 -16.13700 -15.93096 -15.21486 -14.95233 -14.79734 -14.49615 -13.85462 -13.75553 -13.39233 -13.28306 -13.01565 -12.95164 -12.89394 -12.77146 -12.54650 -12.33016 -12.30331 -12.12216 -11.73849 -11.15014 -11.06852 -10.78665 -10.63787 -10.28451 -9.86406 -8.19415 -6.37566 -1.29244 -0.55211 0.19635 0.26645 1.45553 1.46842 1.57831 1.58853 2.17617 2.41675 2.45672 3.12127 3.22536 3.30075 3.60899 3.65216 3.69533 3.99805 4.34331 4.48730 4.67091 4.71182 4.74463 4.84199 4.87986 4.99671 5.02688 5.04287 5.15164 5.36480 5.47733 5.52594 5.62963 5.83565 6.04759 6.46787 6.68248 6.77224 7.24200 7.39672 8.87349 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.003692 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.175201 B = 7582.477970 C = 8166.799315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 C -0.105 4.105 4 C -0.018 4.018 5 C -0.142 4.142 6 C 0.541 3.459 7 O -0.594 6.594 8 N -0.688 5.688 9 C 0.268 3.732 10 H 0.000 1.000 11 C -0.136 4.136 12 C -0.546 4.546 13 H 0.081 0.919 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.974 3.026 17 H -0.255 1.255 18 H -0.280 1.280 19 H -0.287 1.287 20 C -0.013 4.013 21 C -0.072 4.072 22 N 0.034 4.966 23 O -0.234 6.234 24 O -0.119 6.119 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.206 0.794 29 H 0.177 0.823 30 H 0.409 0.591 31 H 0.010 0.990 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.146 5.456 0.865 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 C -0.123 4.123 4 C -0.036 4.036 5 C -0.147 4.147 6 C 0.328 3.672 7 O -0.476 6.476 8 N -0.337 5.337 9 C 0.165 3.835 10 H 0.018 0.982 11 C -0.195 4.195 12 C -0.584 4.584 13 H 0.099 0.901 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.799 3.201 17 H -0.178 1.178 18 H -0.206 1.206 19 H -0.213 1.213 20 C -0.034 4.034 21 C -0.156 4.156 22 N 0.548 4.452 23 O -0.430 6.430 24 O -0.346 6.346 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.223 0.777 29 H 0.195 0.805 30 H 0.246 0.754 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.014 5.221 0.898 20.704 hybrid contribution 0.880 -0.232 -0.291 0.956 sum -19.134 4.989 0.607 19.783 Atomic orbital electron populations 1.21492 0.86021 1.06315 1.05320 1.20578 0.99741 0.89532 0.89216 1.21649 0.92750 0.98414 0.99458 1.22215 0.95559 0.97458 0.88377 1.19822 0.92449 0.94224 1.08157 1.18578 0.87503 0.84298 0.76848 1.90754 1.70933 1.33008 1.52954 1.46138 1.08769 1.07501 1.71316 1.18460 0.74876 0.96594 0.93541 0.98209 1.21919 1.03015 0.97209 0.97312 1.21555 0.92707 1.02615 1.41484 0.90109 1.25825 0.96928 1.00445 0.95427 1.70066 1.02731 1.36041 1.46840 0.85261 0.78557 0.78687 0.77608 1.17815 1.20586 1.21330 1.20889 0.91479 1.00134 0.90870 1.20924 0.91607 0.83720 1.19349 1.43734 1.01087 1.03137 0.97275 1.94613 1.70698 1.20520 1.57219 1.94387 0.96344 1.93753 1.50155 0.87977 0.86821 0.89423 0.77669 0.80550 0.75381 0.97111 0.91363 0.93508 0.92543 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.68 71.24 0.62 -0.73 16 2 C 0.01 0.18 5.89 -19.80 -0.12 0.06 16 3 C -0.10 -1.15 9.65 22.23 0.21 -0.93 16 4 C -0.02 -0.30 9.54 22.52 0.21 -0.08 16 5 C -0.14 -4.01 5.87 -20.09 -0.12 -4.13 16 6 C 0.54 21.17 7.74 86.79 0.67 21.85 16 7 O -0.59 -29.55 16.01 -3.89 -0.06 -29.61 16 8 N -0.69 -26.43 5.02 -448.98 -2.25 -28.69 16 9 C 0.27 13.35 2.56 44.24 0.11 13.47 16 10 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 11 C -0.14 -6.66 9.26 71.98 0.67 -5.99 16 12 C -0.55 -27.21 8.73 25.60 0.22 -26.99 16 13 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 14 C 0.01 0.72 5.30 84.65 0.45 1.17 16 15 N -0.92 -51.38 11.32 21.45 0.24 -51.14 16 16 Si 0.97 40.02 29.54 68.60 2.03 42.05 16 17 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 20 C -0.01 -0.40 9.10 22.53 0.21 -0.19 16 21 C -0.07 -1.80 6.82 36.34 0.25 -1.55 16 22 N 0.03 0.97 4.45 -46.56 -0.21 0.76 16 23 O -0.23 -7.92 18.46 18.88 0.35 -7.57 16 24 O -0.12 -2.97 15.33 18.88 0.29 -2.68 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.11 0.35 8.03 -2.39 -0.02 0.33 16 27 H 0.09 1.16 5.83 -2.38 -0.01 1.15 16 28 H 0.21 0.21 8.05 -2.91 -0.02 0.19 16 29 H 0.18 1.99 6.41 -2.91 -0.02 1.97 16 30 H 0.41 11.96 6.58 -92.71 -0.61 11.35 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.14 4.74 7.21 -2.91 -0.02 4.72 16 Total: -1.00 -72.39 306.82 4.30 -68.09 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.53 Total: 12.85 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 3.39 Total: -4.06 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.22 Total: -79.06 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: 0.58 Total: -39.86 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -72.39 4.30 -68.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.569 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds