Wall clock time and date at job start Tue Mar 31 2020 00:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37986 * 120.07218 * 2 1 4 4 C 1.38335 * 120.14472 * 180.27746 * 3 2 1 5 5 C 1.38385 * 120.29257 * 359.75753 * 4 3 2 6 6 C 1.37940 * 120.14482 * 359.97438 * 5 4 3 7 7 N 1.48018 * 120.07286 * 180.02562 * 6 5 4 8 8 O 1.21805 * 119.99985 * 359.97438 * 7 6 5 9 9 O 1.21791 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.39557 * 120.07985 * 179.76184 * 2 1 3 11 11 C 1.47851 * 120.13891 * 359.97438 * 10 2 1 12 12 O 1.21554 * 119.99805 * 269.72752 * 11 10 2 13 13 N 1.34768 * 120.00017 * 89.72551 * 11 10 2 14 14 C 1.46500 * 120.00056 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46845 * 35.00845 * 14 13 11 16 16 C 1.52997 * 109.47473 * 275.00296 * 14 13 11 17 17 C 1.50706 * 109.47187 * 154.99900 * 14 13 11 18 18 H 1.07998 * 119.99629 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99955 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00308 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99908 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46754 * 90.00468 * 21 19 17 23 23 H 1.48498 * 109.47278 * 210.00299 * 21 19 17 24 24 H 1.48498 * 109.47109 * 330.00728 * 21 19 17 25 25 H 1.09002 * 109.47150 * 270.23421 * 1 2 3 26 26 H 1.08994 * 109.47078 * 30.23749 * 1 2 3 27 27 H 1.09000 * 109.47104 * 150.23748 * 1 2 3 28 28 H 1.08003 * 119.92777 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.85850 * 179.73789 * 4 3 2 30 30 H 1.07999 * 119.92616 * 180.02562 * 5 4 3 31 31 H 0.97001 * 120.00396 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47153 * 59.99757 * 16 14 13 33 33 H 1.09001 * 109.46832 * 299.99948 * 16 14 13 34 34 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 35 35 H 0.96998 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0058 5 6 4.2813 0.0019 -0.0066 6 6 3.6023 -1.1988 -0.0010 7 7 4.3521 -2.4750 -0.0013 8 8 5.5701 -2.4657 -0.0069 9 8 3.7513 -3.5344 0.0041 10 6 2.2064 -1.2076 0.0050 11 6 1.4721 -2.4908 0.0109 12 8 1.1750 -3.0162 1.0661 13 7 1.1321 -3.0780 -1.1535 14 6 0.4049 -4.3498 -1.1477 15 1 -0.2832 -4.3709 -0.3026 16 6 1.3998 -5.5056 -1.0244 17 6 -0.3718 -4.4903 -2.4315 18 1 -0.3278 -3.7104 -3.1772 19 6 -1.1377 -5.6149 -2.6542 20 7 -1.1909 -6.5647 -1.7463 21 14 -2.0999 -5.7893 -4.2458 22 1 -1.2557 -6.4663 -5.2629 23 1 -3.3217 -6.5967 -3.9997 24 1 -2.4872 -4.4436 -4.7402 25 1 -0.3633 0.0042 1.0277 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5101 28 1 1.6584 2.1295 0.0004 29 1 4.1182 2.1332 -0.0101 30 1 5.3613 0.0101 -0.0107 31 1 1.3688 -2.6586 -1.9955 32 1 1.9616 -5.4040 -0.0958 33 1 2.0878 -5.4844 -1.8695 34 1 0.8587 -6.4519 -1.0196 35 1 -1.7300 -7.3557 -1.9029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:57 Heat of formation + Delta-G solvation = -17.646220 kcal Electronic energy + Delta-G solvation = -21957.194098 eV Core-core repulsion = 18537.551554 eV Total energy + Delta-G solvation = -3419.642545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.05886 -40.06653 -38.29729 -36.28831 -34.79775 -33.44098 -32.54558 -31.89149 -28.88620 -27.51135 -26.56838 -25.18440 -23.71923 -21.97323 -21.13350 -19.66071 -18.76481 -18.40921 -17.81537 -17.31579 -16.15334 -16.00680 -15.55483 -15.21432 -14.51485 -14.08128 -13.89222 -13.61938 -13.22613 -12.71601 -12.51980 -12.34537 -12.23878 -11.88633 -11.61405 -11.30806 -11.11222 -10.96503 -10.87327 -10.85437 -10.63845 -10.31638 -10.15365 -9.73526 -9.36496 -9.18938 -8.98030 -8.54108 -7.95005 -6.09884 -4.19694 -0.18404 0.63522 1.38434 1.49442 3.01480 3.10403 3.25282 3.31779 3.33259 3.71953 4.17015 4.33650 4.36924 4.61055 4.68913 4.79421 5.07938 5.22108 5.30833 5.34767 5.50073 5.53640 5.70604 5.87579 5.95108 6.19222 6.51689 6.96116 7.14839 7.26256 7.46447 7.58253 7.69883 7.81667 7.99186 8.20809 8.57115 8.73696 8.99090 9.46891 10.95765 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.005578 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.618792 B = 5018.495332 C = 5722.657141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.051 4.051 3 C -0.075 4.075 4 C -0.109 4.109 5 C -0.067 4.067 6 C -0.017 4.017 7 N 0.020 4.980 8 O -0.173 6.173 9 O -0.115 6.115 10 C -0.054 4.054 11 C 0.551 3.449 12 O -0.529 6.529 13 N -0.689 5.689 14 C 0.268 3.732 15 H 0.050 0.950 16 C -0.144 4.144 17 C -0.535 4.535 18 H 0.060 0.940 19 C 0.068 3.932 20 N -0.880 5.880 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.387 0.613 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 17.402 1.394 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.053 4.053 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.086 4.086 6 C -0.101 4.101 7 N 0.541 4.459 8 O -0.384 6.384 9 O -0.338 6.338 10 C -0.058 4.058 11 C 0.334 3.666 12 O -0.407 6.407 13 N -0.335 5.335 14 C 0.167 3.833 15 H 0.067 0.933 16 C -0.203 4.203 17 C -0.574 4.574 18 H 0.078 0.922 19 C -0.135 4.135 20 N -0.518 5.518 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.219 0.781 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.106 0.894 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.249 17.418 2.174 18.632 hybrid contribution -0.010 -0.225 -1.260 1.280 sum 6.239 17.193 0.914 18.313 Atomic orbital electron populations 1.20969 0.88697 1.04527 1.03942 1.20064 0.97534 0.90333 0.97320 1.21455 0.94307 0.98139 0.95399 1.21254 0.94144 0.97559 0.99817 1.20982 1.02008 0.89679 0.95903 1.21171 0.91035 0.84733 1.13125 1.43609 1.01170 1.02907 0.98239 1.94482 0.95532 1.94101 1.54242 1.94737 1.69937 1.17940 1.51150 1.20299 0.91098 0.97292 0.97146 1.17698 0.80050 0.82857 0.86032 1.90801 1.55155 1.63893 1.30899 1.46485 1.56018 1.25239 1.05782 1.18832 0.89431 0.77031 0.97978 0.93267 1.22019 0.98251 1.02267 0.97732 1.21191 1.28692 1.04875 1.02634 0.92215 1.24861 0.96374 0.95401 0.96909 1.69910 1.39625 1.08446 1.33774 0.86464 0.79420 0.78107 0.83170 1.20532 1.21062 1.19964 0.89719 0.90250 0.89718 0.83652 0.83444 0.82771 0.78128 0.95502 0.95498 0.89450 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.62 36.00 0.35 -1.09 16 2 C -0.05 -0.63 5.91 -104.22 -0.62 -1.25 16 3 C -0.07 -0.64 9.69 -39.64 -0.38 -1.02 16 4 C -0.11 -0.86 10.04 -39.49 -0.40 -1.26 16 5 C -0.07 -0.73 9.55 -39.64 -0.38 -1.11 16 6 C -0.02 -0.27 6.88 -79.55 -0.55 -0.82 16 7 N 0.02 0.37 4.45 34.15 0.15 0.52 16 8 O -0.17 -3.04 18.45 -29.46 -0.54 -3.59 16 9 O -0.11 -2.49 15.72 -33.26 -0.52 -3.02 16 10 C -0.05 -0.87 5.63 -104.97 -0.59 -1.46 16 11 C 0.55 11.48 3.09 -12.33 -0.04 11.44 16 12 O -0.53 -13.13 16.65 -3.44 -0.06 -13.19 16 13 N -0.69 -14.78 4.95 -55.88 -0.28 -15.06 16 14 C 0.27 6.89 2.56 -69.08 -0.18 6.71 16 15 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 16 C -0.14 -3.74 9.26 37.16 0.34 -3.40 16 17 C -0.54 -14.14 8.73 -34.44 -0.30 -14.44 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 20 N -0.88 -24.85 11.32 55.43 0.63 -24.22 16 21 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.08 1.21 7.08 -51.93 -0.37 0.85 16 28 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 29 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.15 1.40 7.61 -52.49 -0.40 1.00 16 31 H 0.39 7.42 8.53 -40.82 -0.35 7.07 16 32 H 0.03 0.68 7.59 -51.93 -0.39 0.29 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -32.71 309.64 -7.68 -40.39 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.87 Total: 3.90 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.83 Total: -5.96 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.50 Total: -38.76 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.12 Total: -19.80 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.71 -7.68 -40.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.744 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds