Wall clock time and date at job start Tue Mar 31 2020 00:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37986 * 120.07218 * 2 1 4 4 C 1.38335 * 120.14472 * 180.27746 * 3 2 1 5 5 C 1.38385 * 120.29257 * 359.75753 * 4 3 2 6 6 C 1.37940 * 120.14482 * 359.97438 * 5 4 3 7 7 N 1.48018 * 120.07286 * 180.02562 * 6 5 4 8 8 O 1.21805 * 119.99985 * 359.97438 * 7 6 5 9 9 O 1.21791 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.39557 * 120.07985 * 179.76184 * 2 1 3 11 11 C 1.47851 * 120.13891 * 359.97438 * 10 2 1 12 12 O 1.21554 * 119.99805 * 269.72752 * 11 10 2 13 13 N 1.34768 * 120.00017 * 89.72551 * 11 10 2 14 14 C 1.46500 * 120.00056 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46845 * 35.00845 * 14 13 11 16 16 C 1.52997 * 109.47473 * 275.00296 * 14 13 11 17 17 C 1.50706 * 109.47187 * 154.99900 * 14 13 11 18 18 H 1.07998 * 119.99629 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99955 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00308 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99908 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46754 * 90.00468 * 21 19 17 23 23 H 1.48498 * 109.47278 * 210.00299 * 21 19 17 24 24 H 1.48498 * 109.47109 * 330.00728 * 21 19 17 25 25 H 1.09002 * 109.47150 * 270.23421 * 1 2 3 26 26 H 1.08994 * 109.47078 * 30.23749 * 1 2 3 27 27 H 1.09000 * 109.47104 * 150.23748 * 1 2 3 28 28 H 1.08003 * 119.92777 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.85850 * 179.73789 * 4 3 2 30 30 H 1.07999 * 119.92616 * 180.02562 * 5 4 3 31 31 H 0.97001 * 120.00396 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47153 * 59.99757 * 16 14 13 33 33 H 1.09001 * 109.46832 * 299.99948 * 16 14 13 34 34 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 35 35 H 0.96998 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0058 5 6 4.2813 0.0019 -0.0066 6 6 3.6023 -1.1988 -0.0010 7 7 4.3521 -2.4750 -0.0013 8 8 5.5701 -2.4657 -0.0069 9 8 3.7513 -3.5344 0.0041 10 6 2.2064 -1.2076 0.0050 11 6 1.4721 -2.4908 0.0109 12 8 1.1750 -3.0162 1.0661 13 7 1.1321 -3.0780 -1.1535 14 6 0.4049 -4.3498 -1.1477 15 1 -0.2832 -4.3709 -0.3026 16 6 1.3998 -5.5056 -1.0244 17 6 -0.3718 -4.4903 -2.4315 18 1 -0.3278 -3.7104 -3.1772 19 6 -1.1377 -5.6149 -2.6542 20 7 -1.1909 -6.5647 -1.7463 21 14 -2.0999 -5.7893 -4.2458 22 1 -1.2557 -6.4663 -5.2629 23 1 -3.3217 -6.5967 -3.9997 24 1 -2.4872 -4.4436 -4.7402 25 1 -0.3633 0.0042 1.0277 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5101 28 1 1.6584 2.1295 0.0004 29 1 4.1182 2.1332 -0.0101 30 1 5.3613 0.0101 -0.0107 31 1 1.3688 -2.6586 -1.9955 32 1 1.9616 -5.4040 -0.0958 33 1 2.0878 -5.4844 -1.8695 34 1 0.8587 -6.4519 -1.0196 35 1 -1.7300 -7.3557 -1.9029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:56 Heat of formation + Delta-G solvation = -39.873494 kcal Electronic energy + Delta-G solvation = -21958.157945 eV Core-core repulsion = 18537.551554 eV Total energy + Delta-G solvation = -3420.606392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.37409 -41.33417 -39.70418 -37.68808 -36.76803 -34.50702 -34.28476 -33.09390 -30.78548 -28.60431 -27.69998 -27.33820 -24.98652 -23.20687 -22.68070 -21.39013 -20.05503 -19.75498 -19.21983 -18.66985 -17.86004 -17.34119 -17.07796 -16.61771 -15.95755 -15.28766 -15.12339 -14.93990 -14.73013 -14.41850 -13.73727 -13.59495 -13.42104 -13.16788 -13.04158 -12.88287 -12.78598 -12.72182 -12.67558 -12.34230 -12.28278 -12.23264 -12.15267 -11.13542 -11.04239 -10.62807 -10.58747 -10.18556 -9.86433 -8.18291 -6.37096 -1.36571 -0.24816 0.22066 0.31745 1.43344 1.44969 1.53822 1.55488 2.12343 2.26736 2.46288 3.11419 3.19604 3.47780 3.65767 3.80574 3.90715 4.02188 4.32488 4.50576 4.61088 4.73598 4.75695 4.94416 4.97849 5.06219 5.08118 5.11326 5.17996 5.39016 5.48385 5.54138 5.63610 5.83322 6.05803 6.39732 6.67291 6.76337 7.22676 7.38924 8.88412 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.005578 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.618792 B = 5018.495332 C = 5722.657141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.056 4.056 3 C -0.046 4.046 4 C -0.079 4.079 5 C -0.057 4.057 6 C -0.043 4.043 7 N 0.022 4.978 8 O -0.127 6.127 9 O -0.225 6.225 10 C -0.090 4.090 11 C 0.558 3.442 12 O -0.585 6.585 13 N -0.687 5.687 14 C 0.278 3.722 15 H 0.002 0.998 16 C -0.125 4.125 17 C -0.548 4.548 18 H 0.073 0.927 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.977 3.023 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.261 1.261 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.043 0.957 28 H 0.199 0.801 29 H 0.207 0.793 30 H 0.179 0.821 31 H 0.398 0.602 32 H 0.012 0.988 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 22.605 -0.156 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.063 4.063 4 C -0.097 4.097 5 C -0.076 4.076 6 C -0.127 4.127 7 N 0.537 4.463 8 O -0.355 6.355 9 O -0.422 6.422 10 C -0.095 4.095 11 C 0.344 3.656 12 O -0.467 6.467 13 N -0.334 5.334 14 C 0.175 3.825 15 H 0.020 0.980 16 C -0.184 4.184 17 C -0.586 4.586 18 H 0.091 0.909 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.801 3.199 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.101 0.899 26 H 0.141 0.859 27 H 0.062 0.938 28 H 0.216 0.784 29 H 0.224 0.776 30 H 0.197 0.803 31 H 0.232 0.768 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.134 22.518 0.607 23.629 hybrid contribution -0.138 -1.540 -0.709 1.702 sum 6.996 20.978 -0.102 22.114 Atomic orbital electron populations 1.21015 0.88673 1.04620 1.03906 1.20332 0.97797 0.90335 0.97290 1.22074 0.94881 0.98055 0.91332 1.21980 0.93933 0.98195 0.95613 1.21529 1.03380 0.88605 0.94040 1.21434 0.90651 0.84119 1.16512 1.44109 1.01231 1.03873 0.97117 1.94389 0.96136 1.94361 1.50633 1.94771 1.70168 1.20007 1.57234 1.19949 0.91486 0.95836 1.02200 1.18311 0.78672 0.84160 0.84491 1.90737 1.57247 1.66114 1.32608 1.46169 1.56022 1.24169 1.07008 1.18368 0.88877 0.78883 0.96335 0.98044 1.21801 0.97828 1.01704 0.97066 1.21486 1.28906 1.05468 1.02779 0.90907 1.25839 0.97290 0.94872 1.00536 1.70070 1.40392 1.09030 1.35982 0.85284 0.77635 0.78567 0.78460 1.19882 1.20931 1.18489 0.89942 0.85889 0.93753 0.78371 0.77644 0.80343 0.76844 0.96867 0.95157 0.91526 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.62 71.24 0.69 -2.03 16 2 C -0.06 -1.24 5.91 -19.61 -0.12 -1.36 16 3 C -0.05 -0.47 9.69 22.23 0.22 -0.26 16 4 C -0.08 -0.66 10.04 22.33 0.22 -0.44 16 5 C -0.06 -0.97 9.55 22.23 0.21 -0.76 16 6 C -0.04 -1.31 6.88 36.63 0.25 -1.06 16 7 N 0.02 0.86 4.45 -45.85 -0.20 0.65 16 8 O -0.13 -4.38 18.45 18.88 0.35 -4.03 16 9 O -0.22 -10.68 15.72 22.53 0.35 -10.32 16 10 C -0.09 -2.97 5.63 -20.09 -0.11 -3.08 16 11 C 0.56 25.17 3.09 86.79 0.27 25.44 16 12 O -0.59 -32.11 16.65 4.49 0.07 -32.04 16 13 N -0.69 -31.92 4.95 -448.98 -2.22 -34.14 16 14 C 0.28 15.50 2.56 44.25 0.11 15.61 16 15 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 16 C -0.13 -7.11 9.26 71.98 0.67 -6.44 16 17 C -0.55 -30.17 8.73 25.60 0.22 -29.95 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.01 0.82 5.30 84.65 0.45 1.27 16 20 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 21 Si 0.98 42.77 29.54 68.60 2.03 44.79 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.12 1.50 8.09 -2.39 -0.02 1.48 16 27 H 0.04 1.32 7.08 -2.39 -0.02 1.30 16 28 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 29 H 0.21 -0.41 8.06 -2.91 -0.02 -0.44 16 30 H 0.18 2.23 7.61 -2.91 -0.02 2.21 16 31 H 0.40 16.29 8.53 -92.71 -0.79 15.50 16 32 H 0.01 0.72 7.59 -2.39 -0.02 0.71 16 33 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 4.02 6.07 -2.38 -0.01 4.01 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -82.73 309.64 4.04 -78.69 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.34 Total: 13.49 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 3.08 Total: -3.06 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -2.18 Total: -87.53 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: 0.78 Total: -46.39 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -82.73 4.04 -78.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -82.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds