Wall clock time and date at job start Tue Mar 31 2020 00:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37986 * 120.07252 * 2 1 4 4 C 1.38341 * 120.13983 * 180.25617 * 3 2 1 5 5 C 1.38379 * 120.29469 * 359.44597 * 4 3 2 6 6 N 1.48019 * 119.92631 * 180.27184 * 5 4 3 7 7 O 1.21793 * 119.99947 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99601 * 179.97438 * 6 5 4 9 9 C 1.37939 * 120.14549 * 0.25625 * 5 4 3 10 10 C 1.39558 * 120.07633 * 179.68272 * 2 1 3 11 11 C 1.47849 * 120.14032 * 359.97438 * 10 2 1 12 12 O 1.21551 * 120.00487 * 353.76985 * 11 10 2 13 13 N 1.34781 * 119.99873 * 173.76483 * 11 10 2 14 14 C 1.46500 * 119.99840 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47332 * 324.99901 * 14 13 11 16 16 C 1.52997 * 109.47163 * 85.00374 * 14 13 11 17 17 C 1.50698 * 109.46874 * 205.00266 * 14 13 11 18 18 H 1.08002 * 120.00152 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00184 * 179.97438 * 17 14 13 20 20 N 1.31520 * 120.00444 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99708 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47088 * 90.00148 * 21 19 17 23 23 H 1.48503 * 109.47365 * 209.99555 * 21 19 17 24 24 H 1.48501 * 109.47239 * 330.00008 * 21 19 17 25 25 H 1.09004 * 109.46961 * 263.72252 * 1 2 3 26 26 H 1.08992 * 109.47131 * 23.72565 * 1 2 3 27 27 H 1.08998 * 109.47051 * 143.72427 * 1 2 3 28 28 H 1.07992 * 119.92826 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.84717 * 179.72439 * 4 3 2 30 30 H 1.07997 * 120.07504 * 179.97438 * 9 5 4 31 31 H 0.97002 * 119.99929 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.46844 * 179.97438 * 16 14 13 33 33 H 1.08992 * 109.47043 * 299.99993 * 16 14 13 34 34 H 1.09003 * 109.46801 * 60.00029 * 16 14 13 35 35 H 0.96997 * 120.00132 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2813 0.0018 0.0008 6 7 5.7615 0.0131 0.0011 7 8 6.3624 1.0725 -0.0036 8 8 6.3784 -1.0371 0.0070 9 6 3.6023 -1.1989 0.0070 10 6 2.2064 -1.2077 0.0067 11 6 1.4720 -2.4908 0.0144 12 8 0.2619 -2.4980 0.1291 13 7 2.1443 -3.6528 -0.1060 14 6 1.4165 -4.9242 -0.0989 15 1 0.5653 -4.8519 0.5781 16 6 0.9194 -5.2351 -1.5121 17 6 2.3346 -6.0259 0.3643 18 1 3.3577 -5.8013 0.6276 19 6 1.8682 -7.3203 0.4531 20 7 2.6692 -8.2817 0.8578 21 14 0.0984 -7.7085 -0.0016 22 1 0.0205 -8.0432 -1.4463 23 1 -0.3765 -8.8646 0.8005 24 1 -0.7556 -6.5267 0.2796 25 1 -0.3633 -0.1124 1.0216 26 1 -0.3633 0.9407 -0.4135 27 1 -0.3633 -0.8285 -0.6080 28 1 1.6585 2.1294 -0.0004 29 1 4.1182 2.1331 -0.0098 30 1 4.1493 -2.1300 0.0114 31 1 3.1100 -3.6472 -0.1972 32 1 0.3783 -6.1813 -1.5069 33 1 0.2554 -4.4383 -1.8471 34 1 1.7707 -5.3074 -2.1890 35 1 2.3409 -9.1922 0.9206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:00 Heat of formation + Delta-G solvation = -9.696245 kcal Electronic energy + Delta-G solvation = -21218.618231 eV Core-core repulsion = 17799.320423 eV Total energy + Delta-G solvation = -3419.297808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.27006 -40.47466 -38.47706 -36.63305 -35.40212 -33.45570 -32.75988 -31.83660 -29.84422 -28.58310 -25.42709 -25.22765 -24.35607 -22.38728 -21.29231 -20.03895 -19.40815 -18.74265 -17.60373 -17.30871 -16.28619 -16.06038 -16.01956 -15.23704 -14.99833 -14.60878 -14.38644 -13.62185 -13.30647 -13.01435 -12.58584 -12.50319 -12.38302 -12.31263 -12.13186 -11.82399 -11.61555 -11.42336 -11.26981 -11.20090 -10.89543 -10.28318 -9.80178 -9.66747 -9.56711 -9.34864 -9.33927 -8.85276 -8.37208 -6.27560 -4.31719 -0.31932 0.38487 1.16196 1.27010 2.63978 3.17131 3.29651 3.31700 3.48743 3.50089 4.08390 4.19856 4.24258 4.37173 4.49659 4.76577 4.97336 5.06395 5.17746 5.35014 5.38260 5.49980 5.59698 5.79201 5.95721 6.18541 6.18787 6.27034 6.34863 6.43024 6.70896 7.00381 7.09750 7.36966 7.55333 7.94527 8.34327 8.54231 8.72119 9.31243 10.84406 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.004945 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.364649 B = 5661.185501 C = 6845.100855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.025 3.975 3 C -0.131 4.131 4 C -0.036 4.036 5 C -0.061 4.061 6 N 0.031 4.969 7 O -0.166 6.166 8 O -0.154 6.154 9 C -0.019 4.019 10 C -0.127 4.127 11 C 0.547 3.453 12 O -0.537 6.537 13 N -0.690 5.690 14 C 0.237 3.763 15 H 0.053 0.947 16 C -0.162 4.162 17 C -0.540 4.540 18 H 0.082 0.918 19 C 0.080 3.920 20 N -0.888 5.888 21 Si 0.885 3.115 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.262 1.262 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.396 0.604 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 18.634 -2.953 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.023 3.977 3 C -0.149 4.149 4 C -0.055 4.055 5 C -0.144 4.144 6 N 0.550 4.450 7 O -0.380 6.380 8 O -0.371 6.371 9 C -0.038 4.038 10 C -0.131 4.131 11 C 0.332 3.668 12 O -0.417 6.417 13 N -0.337 5.337 14 C 0.134 3.866 15 H 0.070 0.930 16 C -0.220 4.220 17 C -0.578 4.578 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.525 5.525 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.187 1.187 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.126 0.874 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.231 0.769 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.280 18.361 -2.828 18.865 hybrid contribution 0.227 -0.385 -0.277 0.526 sum -3.054 17.976 -3.104 18.496 Atomic orbital electron populations 1.21267 0.88480 1.03981 1.04824 1.20584 0.98237 0.91148 0.87708 1.21110 0.92351 0.98733 1.02744 1.21173 0.94671 0.97110 0.92542 1.20942 0.79543 0.96742 1.17157 1.43568 1.03460 1.00508 0.97449 1.94512 1.69661 1.20112 1.53762 1.94594 1.68266 1.21141 1.53097 1.21287 0.93876 0.97760 0.90925 1.20133 0.91818 0.95491 1.05706 1.17895 0.87259 0.83338 0.78312 1.90703 1.13198 1.86808 1.51007 1.46249 1.10969 1.06234 1.70260 1.19204 0.93652 0.80280 0.93457 0.92969 1.22463 1.00219 0.99626 0.99729 1.21003 0.99114 0.90990 1.46695 0.90026 1.24823 0.97637 0.95867 0.94072 1.69864 1.35792 1.01089 1.45723 0.86880 0.85352 0.78190 0.78081 1.20231 1.22037 1.18686 0.89334 0.91717 0.87382 0.83048 0.82711 0.82276 0.76929 0.93171 0.94479 0.92653 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.73 36.01 0.31 -1.04 16 2 C 0.02 0.27 5.91 -104.22 -0.62 -0.35 16 3 C -0.13 -1.09 9.66 -39.64 -0.38 -1.48 16 4 C -0.04 -0.33 9.55 -39.49 -0.38 -0.71 16 5 C -0.06 -0.74 6.85 -80.00 -0.55 -1.29 16 6 N 0.03 0.43 4.45 33.94 0.15 0.59 16 7 O -0.17 -2.33 18.44 -29.46 -0.54 -2.87 16 8 O -0.15 -2.38 18.44 -29.46 -0.54 -2.93 16 9 C -0.02 -0.24 9.03 -39.19 -0.35 -0.59 16 10 C -0.13 -1.72 5.87 -104.97 -0.62 -2.34 16 11 C 0.55 9.42 7.67 -12.33 -0.09 9.32 16 12 O -0.54 -10.38 13.01 5.32 0.07 -10.31 16 13 N -0.69 -12.90 5.02 -55.88 -0.28 -13.18 16 14 C 0.24 5.36 2.15 -69.08 -0.15 5.21 16 15 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 16 C -0.16 -3.43 8.96 37.16 0.33 -3.10 16 17 C -0.54 -14.15 9.31 -34.44 -0.32 -14.47 16 18 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 20 N -0.89 -25.83 13.96 55.43 0.77 -25.05 16 21 Si 0.89 21.02 24.37 -169.99 -4.14 16.87 16 22 H -0.28 -6.34 6.87 56.52 0.39 -5.95 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 27 H 0.11 1.41 5.86 -51.93 -0.30 1.10 16 28 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.16 1.12 7.60 -52.49 -0.40 0.72 16 30 H 0.16 2.00 6.00 -52.49 -0.31 1.69 16 31 H 0.40 6.64 6.61 -40.82 -0.27 6.37 16 32 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -30.43 300.14 -6.41 -36.84 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.51 Total: 4.24 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.91 Total: -8.72 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.64 Total: -37.65 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.02 Total: -16.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.43 -6.41 -36.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds