Wall clock time and date at job start Tue Mar 31 2020 00:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37986 * 120.07252 * 2 1 4 4 C 1.38341 * 120.13983 * 180.25617 * 3 2 1 5 5 C 1.38379 * 120.29469 * 359.44597 * 4 3 2 6 6 N 1.48019 * 119.92631 * 180.27184 * 5 4 3 7 7 O 1.21793 * 119.99947 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99601 * 179.97438 * 6 5 4 9 9 C 1.37939 * 120.14549 * 0.25625 * 5 4 3 10 10 C 1.39558 * 120.07633 * 179.68272 * 2 1 3 11 11 C 1.47849 * 120.14032 * 359.97438 * 10 2 1 12 12 O 1.21551 * 120.00487 * 353.76985 * 11 10 2 13 13 N 1.34781 * 119.99873 * 173.76483 * 11 10 2 14 14 C 1.46500 * 119.99840 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47332 * 324.99901 * 14 13 11 16 16 C 1.52997 * 109.47163 * 85.00374 * 14 13 11 17 17 C 1.50698 * 109.46874 * 205.00266 * 14 13 11 18 18 H 1.08002 * 120.00152 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00184 * 179.97438 * 17 14 13 20 20 N 1.31520 * 120.00444 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99708 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47088 * 90.00148 * 21 19 17 23 23 H 1.48503 * 109.47365 * 209.99555 * 21 19 17 24 24 H 1.48501 * 109.47239 * 330.00008 * 21 19 17 25 25 H 1.09004 * 109.46961 * 263.72252 * 1 2 3 26 26 H 1.08992 * 109.47131 * 23.72565 * 1 2 3 27 27 H 1.08998 * 109.47051 * 143.72427 * 1 2 3 28 28 H 1.07992 * 119.92826 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.84717 * 179.72439 * 4 3 2 30 30 H 1.07997 * 120.07504 * 179.97438 * 9 5 4 31 31 H 0.97002 * 119.99929 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.46844 * 179.97438 * 16 14 13 33 33 H 1.08992 * 109.47043 * 299.99993 * 16 14 13 34 34 H 1.09003 * 109.46801 * 60.00029 * 16 14 13 35 35 H 0.96997 * 120.00132 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2813 0.0018 0.0008 6 7 5.7615 0.0131 0.0011 7 8 6.3624 1.0725 -0.0036 8 8 6.3784 -1.0371 0.0070 9 6 3.6023 -1.1989 0.0070 10 6 2.2064 -1.2077 0.0067 11 6 1.4720 -2.4908 0.0144 12 8 0.2619 -2.4980 0.1291 13 7 2.1443 -3.6528 -0.1060 14 6 1.4165 -4.9242 -0.0989 15 1 0.5653 -4.8519 0.5781 16 6 0.9194 -5.2351 -1.5121 17 6 2.3346 -6.0259 0.3643 18 1 3.3577 -5.8013 0.6276 19 6 1.8682 -7.3203 0.4531 20 7 2.6692 -8.2817 0.8578 21 14 0.0984 -7.7085 -0.0016 22 1 0.0205 -8.0432 -1.4463 23 1 -0.3765 -8.8646 0.8005 24 1 -0.7556 -6.5267 0.2796 25 1 -0.3633 -0.1124 1.0216 26 1 -0.3633 0.9407 -0.4135 27 1 -0.3633 -0.8285 -0.6080 28 1 1.6585 2.1294 -0.0004 29 1 4.1182 2.1331 -0.0098 30 1 4.1493 -2.1300 0.0114 31 1 3.1100 -3.6472 -0.1972 32 1 0.3783 -6.1813 -1.5069 33 1 0.2554 -4.4383 -1.8471 34 1 1.7707 -5.3074 -2.1890 35 1 2.3409 -9.1922 0.9206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:00 Heat of formation + Delta-G solvation = -29.368929 kcal Electronic energy + Delta-G solvation = -21219.471303 eV Core-core repulsion = 17799.320423 eV Total energy + Delta-G solvation = -3420.150879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32090 -41.61725 -39.68942 -37.72423 -37.03822 -34.73501 -34.18414 -33.17728 -31.31800 -29.57502 -27.27638 -26.38020 -25.39139 -23.59683 -22.49892 -21.54355 -20.63570 -19.80253 -18.93273 -18.66059 -17.79117 -17.57095 -16.91891 -16.51351 -16.29241 -16.02901 -15.36718 -15.05935 -14.79320 -14.52556 -14.16168 -13.79726 -13.42927 -13.24954 -13.24291 -13.15666 -13.06927 -12.78057 -12.70113 -12.33510 -12.32194 -12.16649 -11.60903 -11.33067 -10.90102 -10.75979 -10.58267 -10.43310 -9.97053 -8.40019 -6.47870 -1.31496 -0.55397 0.18409 0.28002 1.27432 1.35076 1.44376 1.58573 2.15733 2.24563 2.35789 2.95934 3.18539 3.28298 3.48739 3.67414 3.79931 3.98620 4.32130 4.41266 4.48821 4.52138 4.62149 4.64595 4.67120 4.79152 4.93546 5.01288 5.10652 5.25834 5.28518 5.35892 5.46464 5.57183 6.06470 6.42924 6.52424 6.67456 7.08755 7.24050 8.75411 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.004945 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.364649 B = 5661.185501 C = 6845.100855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.028 3.972 3 C -0.106 4.106 4 C -0.018 4.018 5 C -0.073 4.073 6 N 0.033 4.967 7 O -0.141 6.141 8 O -0.212 6.212 9 C -0.023 4.023 10 C -0.145 4.145 11 C 0.548 3.452 12 O -0.559 6.559 13 N -0.697 5.697 14 C 0.243 3.757 15 H 0.033 0.967 16 C -0.156 4.156 17 C -0.540 4.540 18 H 0.052 0.948 19 C 0.028 3.972 20 N -0.934 5.934 21 Si 0.943 3.057 22 H -0.259 1.259 23 H -0.293 1.293 24 H -0.256 1.256 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.202 0.798 29 H 0.187 0.813 30 H 0.148 0.852 31 H 0.402 0.598 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 22.179 -3.745 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.027 3.973 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.157 4.157 6 N 0.548 4.452 7 O -0.365 6.365 8 O -0.416 6.416 9 C -0.044 4.044 10 C -0.149 4.149 11 C 0.335 3.665 12 O -0.441 6.441 13 N -0.346 5.346 14 C 0.139 3.861 15 H 0.051 0.949 16 C -0.214 4.214 17 C -0.578 4.578 18 H 0.070 0.930 19 C -0.172 4.172 20 N -0.573 5.573 21 Si 0.770 3.230 22 H -0.185 1.185 23 H -0.220 1.220 24 H -0.180 1.180 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.219 0.781 29 H 0.204 0.796 30 H 0.166 0.834 31 H 0.238 0.762 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.823 21.820 -3.629 22.639 hybrid contribution 0.740 -1.253 0.011 1.455 sum -4.083 20.566 -3.618 21.278 Atomic orbital electron populations 1.21242 0.87896 1.04959 1.04276 1.20841 0.98737 0.91078 0.86676 1.21574 0.91725 0.99298 0.99841 1.21652 0.95175 0.96932 0.89908 1.21072 0.78187 0.97673 1.18720 1.43831 1.04323 1.00148 0.96886 1.94467 1.70323 1.19873 1.51847 1.94617 1.69129 1.21566 1.56277 1.21152 0.93723 0.98064 0.91412 1.19771 0.91766 0.94508 1.08891 1.18372 0.87153 0.83992 0.76964 1.90695 1.14239 1.87362 1.51779 1.46098 1.11279 1.05811 1.71413 1.18846 0.92408 0.80931 0.93942 0.94891 1.22351 1.00685 0.99793 0.98577 1.21244 0.98453 0.92251 1.45838 0.93001 1.25613 1.01627 0.95802 0.94135 1.69990 1.37917 1.01654 1.47695 0.85944 0.80501 0.77983 0.78606 1.18492 1.22026 1.18012 0.89691 0.87701 0.90278 0.78121 0.79587 0.83448 0.76174 0.93759 0.92891 0.91971 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.73 71.24 0.62 -1.64 16 2 C 0.03 0.53 5.91 -19.61 -0.12 0.41 16 3 C -0.11 -1.19 9.66 22.23 0.21 -0.98 16 4 C -0.02 -0.25 9.55 22.33 0.21 -0.04 16 5 C -0.07 -1.65 6.85 36.34 0.25 -1.40 16 6 N 0.03 0.89 4.45 -46.55 -0.21 0.68 16 7 O -0.14 -3.65 18.44 18.90 0.35 -3.30 16 8 O -0.21 -6.84 18.44 18.89 0.35 -6.49 16 9 C -0.02 -0.59 9.03 22.53 0.20 -0.39 16 10 C -0.15 -3.78 5.87 -20.09 -0.12 -3.90 16 11 C 0.55 18.95 7.67 86.79 0.67 19.61 16 12 O -0.56 -21.59 13.01 -3.88 -0.05 -21.64 16 13 N -0.70 -26.83 5.02 -448.98 -2.25 -29.08 16 14 C 0.24 11.18 2.15 44.24 0.10 11.27 16 15 H 0.03 1.65 6.63 -2.39 -0.02 1.64 16 16 C -0.16 -6.50 8.96 71.98 0.65 -5.85 16 17 C -0.54 -29.27 9.31 25.60 0.24 -29.04 16 18 H 0.05 3.04 7.98 -2.91 -0.02 3.02 16 19 C 0.03 1.57 5.45 84.65 0.46 2.04 16 20 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 21 Si 0.94 43.61 24.37 68.60 1.67 45.28 16 22 H -0.26 -11.25 6.87 99.48 0.68 -10.57 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.26 -11.47 6.53 99.48 0.65 -10.83 16 25 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.10 1.00 8.04 -2.39 -0.02 0.98 16 27 H 0.08 1.94 5.86 -2.39 -0.01 1.92 16 28 H 0.20 0.40 8.06 -2.91 -0.02 0.38 16 29 H 0.19 1.55 7.60 -2.91 -0.02 1.53 16 30 H 0.15 3.98 6.00 -2.91 -0.02 3.96 16 31 H 0.40 14.27 6.61 -92.71 -0.61 13.65 16 32 H 0.04 1.88 3.27 -2.39 -0.01 1.88 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -68.87 300.14 3.99 -64.89 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.45 Total: 15.28 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 3.37 Total: -9.91 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.16 Total: -84.11 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: 0.65 Total: -31.43 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.28 kcal Total: -68.87 3.99 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.518 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds