Wall clock time and date at job start Mon Mar 30 2020 23:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99879 * 3 2 1 5 5 H 1.48500 * 109.47271 * 30.00447 * 3 2 1 6 6 H 1.48500 * 109.46810 * 149.99892 * 3 2 1 7 7 C 1.38949 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00083 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99581 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00163 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47054 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99960 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.46917 * 324.99799 * 14 13 12 16 16 C 1.50694 * 109.47358 * 85.00253 * 14 13 12 17 17 O 1.20828 * 119.99557 * 0.02562 * 16 14 13 18 18 O 1.34223 * 120.00435 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47187 * 205.00671 * 14 13 12 20 20 C 1.38235 * 120.00292 * 139.99945 * 19 14 13 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 14 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 319.97237 * 19 14 13 25 25 H 0.96998 * 119.99932 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99851 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47107 * 60.00399 * 12 10 9 28 28 H 1.09001 * 109.47674 * 300.00475 * 12 10 9 29 29 H 1.00893 * 111.00163 * 303.95742 * 13 12 10 30 30 H 0.96699 * 117.00577 * 179.97438 * 18 16 14 31 31 H 1.08001 * 119.99730 * 359.97438 * 20 19 14 32 32 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 34 34 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00455 * 0.02562 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4982 -7.2708 -0.0028 15 1 0.5848 -7.1893 0.5864 16 6 1.1504 -7.6524 -1.4186 17 8 1.4551 -6.9236 -2.3328 18 8 0.5031 -8.8023 -1.6640 19 6 2.3904 -8.3267 0.5973 20 6 1.8579 -9.2843 1.4401 21 6 2.6762 -10.2531 1.9901 22 6 4.0270 -10.2648 1.6967 23 6 4.5594 -9.3081 0.8528 24 6 3.7414 -8.3379 0.3046 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6176 -4.9205 -0.8914 28 1 0.6167 -4.9209 0.8885 29 1 2.8333 -5.9121 -0.7829 30 1 0.3013 -9.0040 -2.5880 31 1 0.8024 -9.2755 1.6687 32 1 2.2603 -11.0010 2.6488 33 1 4.6673 -11.0191 2.1299 34 1 5.6148 -9.3169 0.6239 35 1 4.1575 -7.5897 -0.3538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050510838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:40 Heat of formation + Delta-G solvation = -96.109977 kcal Electronic energy + Delta-G solvation = -20832.143710 eV Core-core repulsion = 17409.098722 eV Total energy + Delta-G solvation = -3423.044988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76429 -39.06501 -38.22619 -36.47307 -35.33457 -33.87283 -31.67692 -31.15645 -30.92319 -27.90183 -25.75357 -23.93730 -22.71389 -22.42630 -20.62348 -19.35937 -18.26636 -17.95195 -17.24754 -17.13771 -15.98375 -15.87453 -15.07410 -15.02230 -14.61316 -14.44014 -14.13028 -13.76070 -13.54772 -13.38416 -13.06972 -12.76714 -12.34135 -12.17202 -11.73135 -11.64273 -11.52506 -11.24595 -11.07936 -11.03464 -10.84036 -10.37975 -10.20774 -9.50155 -8.95976 -8.84408 -8.66694 -8.26839 -7.95757 -6.40596 -3.81351 1.20527 1.37186 2.05827 2.90661 3.19324 3.27840 3.33969 3.67501 3.90767 4.06375 4.27285 4.55426 4.75842 4.92323 5.03985 5.06865 5.07780 5.18056 5.27391 5.44724 5.56449 5.71556 5.85087 5.90386 5.98496 6.20338 6.33995 6.37398 6.45800 6.49130 6.87545 6.94708 7.38605 7.56645 7.74410 8.06507 8.61485 9.18535 9.54304 10.05377 10.77188 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.003684 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.085833 B = 7598.807535 C = 8112.668151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.445 3.555 11 O -0.582 6.582 12 C 0.043 3.957 13 N -0.630 5.630 14 C 0.137 3.863 15 H 0.125 0.875 16 C 0.452 3.548 17 O -0.508 6.508 18 O -0.513 6.513 19 C -0.070 4.070 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.089 4.089 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.363 0.637 30 H 0.405 0.595 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -20.512 1.210 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.230 3.770 11 O -0.466 6.466 12 C -0.090 4.090 13 N -0.264 5.264 14 C 0.024 3.976 15 H 0.143 0.857 16 C 0.291 3.709 17 O -0.395 6.395 18 O -0.323 6.323 19 C -0.071 4.071 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.107 4.107 25 H 0.081 0.919 26 H 0.226 0.774 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.187 0.813 30 H 0.263 0.737 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.589 -20.003 2.035 20.114 hybrid contribution -0.761 0.768 -1.577 1.912 sum -0.172 -19.235 0.458 19.241 Atomic orbital electron populations 1.69615 1.05950 1.28168 1.50584 1.25266 0.95641 0.99735 0.97284 0.85844 0.79251 0.80739 0.78379 1.20422 1.20922 1.19365 1.19713 0.93405 0.82158 1.47562 0.87855 1.41824 1.09200 1.04520 1.64277 1.19594 0.88303 0.84497 0.84623 1.90531 1.13647 1.86971 1.55427 1.21847 0.94521 0.90961 1.01649 1.60609 1.17191 0.97753 1.50816 1.20369 0.98271 0.90557 0.88436 0.85746 1.25031 0.73667 0.78154 0.94036 1.90776 1.50587 1.51554 1.46593 1.84588 1.70683 1.40683 1.36366 1.19252 0.93909 0.95143 0.98773 1.20955 0.99904 0.94340 0.96479 1.21060 0.93868 0.98911 1.00403 1.21170 0.95419 0.98825 0.98176 1.21142 0.99858 0.95138 0.97863 1.21047 0.92927 0.97516 0.99240 0.91869 0.77436 0.92997 0.89070 0.81335 0.73664 0.85771 0.85998 0.86211 0.85946 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.50 5.29 -10.97 -0.06 -14.56 16 10 C 0.44 10.76 7.82 -10.99 -0.09 10.68 16 11 O -0.58 -16.10 15.78 5.54 0.09 -16.02 16 12 C 0.04 0.77 5.86 -4.98 -0.03 0.74 16 13 N -0.63 -10.57 5.18 -110.46 -0.57 -11.15 16 14 C 0.14 1.78 2.70 -70.02 -0.19 1.59 16 15 H 0.12 1.37 7.66 -51.93 -0.40 0.97 16 16 C 0.45 5.95 7.44 36.00 0.27 6.22 16 17 O -0.51 -8.44 16.06 -18.75 -0.30 -8.74 16 18 O -0.51 -5.08 13.34 -39.24 -0.52 -5.61 16 19 C -0.07 -0.87 4.88 -104.62 -0.51 -1.38 16 20 C -0.10 -1.03 9.67 -39.59 -0.38 -1.41 16 21 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 24 C -0.09 -1.14 9.32 -39.58 -0.37 -1.51 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 27 H 0.05 0.91 7.62 -51.93 -0.40 0.51 16 28 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 29 H 0.36 6.69 6.79 -39.30 -0.27 6.42 16 30 H 0.40 2.41 9.10 45.56 0.41 2.82 16 31 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.69 7.25 -52.49 -0.38 1.31 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -34.09 314.64 -6.63 -40.71 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -2.97 Total: 16.41 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.73 Total: 1.98 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.09 Total: -49.76 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.74 Total: -30.36 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.09 -6.63 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050510838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.397 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds