Wall clock time and date at job start Mon Mar 30 2020 23:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99879 * 3 2 1 5 5 H 1.48500 * 109.47271 * 30.00447 * 3 2 1 6 6 H 1.48500 * 109.46810 * 149.99892 * 3 2 1 7 7 C 1.38949 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00083 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99581 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00163 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47054 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99960 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.46917 * 324.99799 * 14 13 12 16 16 C 1.50694 * 109.47358 * 85.00253 * 14 13 12 17 17 O 1.20828 * 119.99557 * 0.02562 * 16 14 13 18 18 O 1.34223 * 120.00435 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47187 * 205.00671 * 14 13 12 20 20 C 1.38235 * 120.00292 * 139.99945 * 19 14 13 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 14 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 319.97237 * 19 14 13 25 25 H 0.96998 * 119.99932 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99851 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47107 * 60.00399 * 12 10 9 28 28 H 1.09001 * 109.47674 * 300.00475 * 12 10 9 29 29 H 1.00893 * 111.00163 * 303.95742 * 13 12 10 30 30 H 0.96699 * 117.00577 * 179.97438 * 18 16 14 31 31 H 1.08001 * 119.99730 * 359.97438 * 20 19 14 32 32 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 34 34 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00455 * 0.02562 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4982 -7.2708 -0.0028 15 1 0.5848 -7.1893 0.5864 16 6 1.1504 -7.6524 -1.4186 17 8 1.4551 -6.9236 -2.3328 18 8 0.5031 -8.8023 -1.6640 19 6 2.3904 -8.3267 0.5973 20 6 1.8579 -9.2843 1.4401 21 6 2.6762 -10.2531 1.9901 22 6 4.0270 -10.2648 1.6967 23 6 4.5594 -9.3081 0.8528 24 6 3.7414 -8.3379 0.3046 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6176 -4.9205 -0.8914 28 1 0.6167 -4.9209 0.8885 29 1 2.8333 -5.9121 -0.7829 30 1 0.3013 -9.0040 -2.5880 31 1 0.8024 -9.2755 1.6687 32 1 2.2603 -11.0010 2.6488 33 1 4.6673 -11.0191 2.1299 34 1 5.6148 -9.3169 0.6239 35 1 4.1575 -7.5897 -0.3538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050510838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:39 Heat of formation + Delta-G solvation = -121.945330 kcal Electronic energy + Delta-G solvation = -20833.264015 eV Core-core repulsion = 17409.098722 eV Total energy + Delta-G solvation = -3424.165293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80297 -40.13821 -39.87813 -37.51548 -36.57973 -35.87224 -33.34267 -32.62249 -31.73981 -29.14197 -27.33787 -25.60202 -23.59547 -23.30321 -21.57553 -21.19553 -19.97833 -19.24134 -18.52025 -18.10694 -17.48841 -16.92671 -16.56027 -16.22477 -16.09657 -15.74866 -15.65657 -15.12891 -14.86907 -14.38080 -14.17390 -13.88493 -13.68652 -13.49735 -13.37314 -13.11070 -12.88273 -12.65609 -12.43784 -12.15529 -12.11986 -11.93114 -11.81365 -11.53157 -10.44208 -10.04627 -9.82834 -9.74241 -9.63568 -8.48363 -5.97441 0.37351 0.56223 1.04327 1.37240 1.41169 1.54288 1.97367 2.01839 2.27879 2.65549 3.04738 3.18185 3.38813 3.61514 3.85852 4.15348 4.19806 4.24036 4.25582 4.36438 4.43204 4.49051 4.68201 4.76581 5.05412 5.19693 5.38766 5.44050 5.51212 5.60983 5.66973 5.75720 5.96383 6.01114 6.14450 6.56766 6.86127 7.09823 7.51824 8.07027 8.69124 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.003684 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.085833 B = 7598.807535 C = 8112.668151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.570 5.570 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.058 3.942 13 N -0.642 5.642 14 C 0.138 3.862 15 H 0.151 0.849 16 C 0.461 3.539 17 O -0.550 6.550 18 O -0.499 6.499 19 C -0.085 4.085 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.116 4.116 25 H 0.279 0.721 26 H 0.397 0.603 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.350 0.650 30 H 0.425 0.575 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 -22.018 2.263 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.227 3.773 11 O -0.509 6.509 12 C -0.074 4.074 13 N -0.274 5.274 14 C 0.026 3.974 15 H 0.169 0.831 16 C 0.303 3.697 17 O -0.440 6.440 18 O -0.311 6.311 19 C -0.086 4.086 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.151 4.151 24 C -0.134 4.134 25 H 0.088 0.912 26 H 0.231 0.769 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.171 0.829 30 H 0.286 0.714 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.574 -21.555 3.089 21.782 hybrid contribution -0.417 1.082 -1.899 2.225 sum -0.991 -20.473 1.190 20.531 Atomic orbital electron populations 1.69671 1.06836 1.29393 1.50103 1.26058 0.96574 1.02429 0.96100 0.84910 0.77928 0.76752 0.78634 1.19715 1.19305 1.19718 1.19683 0.92747 0.83974 1.50140 0.90314 1.41882 1.09340 1.04612 1.64844 1.20647 0.88198 0.86011 0.82484 1.90496 1.15781 1.87891 1.56719 1.21709 0.94086 0.88145 1.03440 1.60587 1.17352 0.99024 1.50444 1.20442 0.99186 0.88936 0.88884 0.83147 1.24912 0.72956 0.78275 0.93587 1.90770 1.52442 1.53078 1.47752 1.84521 1.69544 1.38848 1.38169 1.19273 0.93532 0.95821 0.99972 1.21256 1.01313 0.93741 0.95551 1.21475 0.93674 0.98938 0.99987 1.21534 0.96172 0.98629 0.97218 1.21357 1.00396 0.95186 0.98203 1.21062 0.93907 0.98207 1.00267 0.91204 0.76895 0.92066 0.86006 0.82887 0.71394 0.83416 0.82970 0.83566 0.84932 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.34 -19.55 9.68 84.04 0.81 -18.73 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.11 5.29 -306.99 -1.62 -31.73 16 10 C 0.44 21.81 7.82 87.65 0.69 22.49 16 11 O -0.62 -35.89 15.78 -3.08 -0.05 -35.94 16 12 C 0.06 2.10 5.86 85.55 0.50 2.60 16 13 N -0.64 -21.73 5.18 -503.39 -2.61 -24.34 16 14 C 0.14 3.44 2.70 43.42 0.12 3.56 16 15 H 0.15 2.90 7.66 -2.39 -0.02 2.88 16 16 C 0.46 11.74 7.44 71.23 0.53 12.27 16 17 O -0.55 -18.44 16.06 21.96 0.35 -18.09 16 18 O -0.50 -8.83 13.34 -51.34 -0.68 -9.51 16 19 C -0.09 -2.01 4.88 -19.87 -0.10 -2.11 16 20 C -0.10 -1.82 9.67 22.27 0.22 -1.60 16 21 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 22 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 23 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 24 C -0.12 -3.01 9.32 22.27 0.21 -2.80 16 25 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 27 H 0.06 2.11 7.62 -2.39 -0.02 2.09 16 28 H 0.12 3.63 8.06 -2.39 -0.02 3.61 16 29 H 0.35 13.50 6.79 -89.70 -0.61 12.90 16 30 H 0.42 4.15 9.10 -74.06 -0.67 3.47 16 31 H 0.15 1.90 8.04 -2.91 -0.02 1.88 16 32 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.10 3.03 7.25 -2.91 -0.02 3.01 16 Total: -1.00 -75.38 314.64 0.95 -74.42 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -0.86 Total: 40.03 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.11 Total: 9.44 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.95 Total: -105.98 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.38 Total: -63.54 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.38 0.95 -74.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050510838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.521 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds