Wall clock time and date at job start Tue Mar 31 2020 00:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99941 * 2 1 4 4 H 1.48493 * 109.47110 * 270.00134 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99906 * 3 2 1 6 6 H 1.48500 * 109.47235 * 149.99890 * 3 2 1 7 7 C 1.37871 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99921 * 184.82959 * 7 2 1 9 9 C 1.50702 * 119.99962 * 4.81880 * 7 2 1 10 10 N 1.46497 * 109.46673 * 54.31212 * 9 7 2 11 11 C 1.46499 * 119.99989 * 72.76080 * 10 9 7 12 12 C 1.50697 * 109.47535 * 94.72511 * 11 10 9 13 13 C 1.38671 * 120.41651 * 274.86110 * 12 11 10 14 14 C 1.38627 * 118.42102 * 179.78281 * 13 12 11 15 15 C 1.38224 * 119.16103 * 0.51161 * 14 13 12 16 16 N 1.31854 * 120.76429 * 359.72882 * 15 14 13 17 17 C 1.31880 * 121.72389 * 359.97438 * 16 15 14 18 18 C 1.34772 * 120.00210 * 252.75285 * 10 9 7 19 19 O 1.21284 * 120.00597 * 180.02562 * 18 10 9 20 20 C 1.50705 * 119.99725 * 0.02562 * 18 10 9 21 21 C 1.50707 * 109.47091 * 179.97438 * 20 18 10 22 22 O 1.20826 * 119.99839 * 0.02562 * 21 20 18 23 23 O 1.34227 * 119.99989 * 180.02562 * 21 20 18 24 24 H 0.97007 * 120.00110 * 355.00268 * 1 2 3 25 25 H 1.08999 * 109.47073 * 174.30609 * 9 7 2 26 26 H 1.08992 * 109.47402 * 294.30886 * 9 7 2 27 27 H 1.09006 * 109.47094 * 214.72418 * 11 10 9 28 28 H 1.08997 * 109.47591 * 334.71738 * 11 10 9 29 29 H 1.08007 * 120.79129 * 0.02562 * 13 12 11 30 30 H 1.08005 * 120.41945 * 180.22293 * 14 13 12 31 31 H 1.08001 * 119.61652 * 179.74551 * 15 14 13 32 32 H 1.08001 * 119.62014 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.47174 * 299.99499 * 20 18 10 34 34 H 1.09002 * 109.47186 * 59.99785 * 20 18 10 35 35 H 0.96700 * 116.99804 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 0.0782 9 6 1.2550 -2.4968 -0.1108 10 7 0.3972 -2.4676 -1.2980 11 6 0.9911 -2.5686 -2.6334 12 6 0.9673 -4.0056 -3.0865 13 6 1.9844 -4.8741 -2.7205 14 6 1.9187 -6.1884 -3.1566 15 6 0.8545 -6.5839 -3.9450 16 7 -0.0927 -5.7291 -4.2779 17 6 -0.0657 -4.4732 -3.8764 18 6 -0.9382 -2.3480 -1.1617 19 8 -1.6485 -2.3243 -2.1445 20 6 -1.5491 -2.2438 0.2120 21 6 -3.0459 -2.1196 0.0881 22 8 -3.5635 -2.1166 -1.0037 23 8 -3.8040 -2.0123 1.1906 24 1 -0.4851 0.8369 0.0732 25 1 1.9658 -3.3187 -0.1962 26 1 0.6405 -2.6387 0.7781 27 1 0.4196 -1.9577 -3.3323 28 1 2.0216 -2.2150 -2.6005 29 1 2.8064 -4.5357 -2.1069 30 1 2.6916 -6.8932 -2.8875 31 1 0.7981 -7.6050 -4.2923 32 1 -0.8597 -3.8021 -4.1689 33 1 -1.3047 -3.1369 0.7871 34 1 -1.1527 -1.3646 0.7202 35 1 -4.7592 -1.9354 1.0608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050914036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:46 Heat of formation + Delta-G solvation = -83.887139 kcal Electronic energy + Delta-G solvation = -22059.093192 eV Core-core repulsion = 18636.578226 eV Total energy + Delta-G solvation = -3422.514966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97985 -39.57180 -38.14158 -35.49790 -34.77574 -33.15216 -31.85569 -31.23705 -29.75985 -27.66993 -25.69307 -23.30782 -22.81176 -22.25050 -21.09213 -18.17896 -17.44857 -16.92913 -16.52099 -16.14407 -15.81855 -15.51059 -15.00817 -14.81289 -14.79064 -14.48568 -13.72443 -13.39207 -12.84157 -12.74578 -12.52376 -12.39612 -12.16085 -11.91124 -11.48153 -11.30297 -11.07665 -10.89154 -10.86395 -10.68386 -10.01727 -9.95649 -9.61256 -9.50208 -9.13338 -8.89133 -8.74588 -8.34872 -7.40909 -6.33108 -4.51469 1.42653 1.60640 3.02695 3.12737 3.23006 3.23051 3.54847 3.93366 4.10061 4.16763 4.55807 4.78230 5.03304 5.10126 5.30447 5.34462 5.45239 5.64856 5.79302 5.97966 6.04709 6.13749 6.30700 6.37527 6.47376 6.57440 6.72677 6.88208 6.94106 7.06836 7.14262 7.51608 7.72737 7.90107 8.30364 8.53367 8.64592 8.72629 9.22814 9.49008 10.64932 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.007804 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.998446 B = 3587.096917 C = 5166.784905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.225 3.775 10 N -0.578 5.578 11 C 0.170 3.830 12 C -0.140 4.140 13 C -0.064 4.064 14 C -0.182 4.182 15 C 0.084 3.916 16 N -0.492 5.492 17 C 0.120 3.880 18 C 0.550 3.450 19 O -0.551 6.551 20 C -0.145 4.145 21 C 0.475 3.525 22 O -0.485 6.485 23 O -0.529 6.529 24 H 0.270 0.730 25 H 0.024 0.976 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.101 0.899 34 H 0.189 0.811 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -6.888 0.524 7.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.105 3.895 10 N -0.310 5.310 11 C 0.045 3.955 12 C -0.144 4.144 13 C -0.091 4.091 14 C -0.202 4.202 15 C -0.073 4.073 16 N -0.201 5.201 17 C -0.037 4.037 18 C 0.338 3.662 19 O -0.429 6.429 20 C -0.184 4.184 21 C 0.316 3.684 22 O -0.370 6.370 23 O -0.341 6.341 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.155 -7.061 -0.821 7.202 hybrid contribution 0.606 1.312 0.660 1.589 sum 1.761 -5.749 -0.162 6.015 Atomic orbital electron populations 1.69307 1.06204 1.27581 1.49001 1.24987 0.94773 0.99667 0.93105 0.86433 0.79716 0.82514 0.78364 1.20485 1.20989 1.19811 1.21575 0.94007 0.91202 1.50896 0.91821 1.19405 0.90354 0.95551 0.84168 1.48177 1.05527 1.71076 1.06174 1.19880 1.00076 0.89396 0.86102 1.21626 0.95409 0.99257 0.98060 1.21558 0.98008 0.92913 0.96623 1.22056 1.00379 0.96937 1.00823 1.22665 0.90375 0.99002 0.95277 1.67711 1.26462 1.03707 1.22205 1.22906 0.96376 0.91651 0.92806 1.19366 0.82224 0.75083 0.89507 1.90676 1.60746 1.51478 1.40029 1.21917 0.86903 1.09454 1.00164 1.23413 0.90866 0.72731 0.81415 1.90781 1.74356 1.44142 1.27734 1.84567 1.24032 1.86199 1.39312 0.91959 0.95762 0.93838 0.90483 0.89460 0.84870 0.85359 0.83515 0.82330 0.88147 0.79532 0.74530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.48 8.26 55.43 0.46 -21.02 16 2 C 0.08 1.84 5.33 -17.82 -0.10 1.75 16 3 Si 0.90 19.09 29.54 -169.99 -5.02 14.07 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -12.35 9.11 -34.44 -0.31 -12.66 16 8 H 0.06 1.44 7.82 -52.48 -0.41 1.03 16 9 C 0.22 4.69 5.65 -5.19 -0.03 4.66 16 10 N -0.58 -12.37 2.11 -176.44 -0.37 -12.74 16 11 C 0.17 3.31 5.43 -5.20 -0.03 3.28 16 12 C -0.14 -2.47 5.44 -104.48 -0.57 -3.04 16 13 C -0.06 -0.97 9.88 -39.28 -0.39 -1.36 16 14 C -0.18 -2.42 10.11 -39.44 -0.40 -2.82 16 15 C 0.08 1.21 11.18 -17.55 -0.20 1.01 16 16 N -0.49 -8.70 10.36 -13.25 -0.14 -8.84 16 17 C 0.12 2.22 10.67 -17.55 -0.19 2.03 16 18 C 0.55 12.77 6.33 -10.98 -0.07 12.70 16 19 O -0.55 -14.31 13.29 -18.96 -0.25 -14.56 16 20 C -0.14 -3.01 4.40 -29.03 -0.13 -3.14 16 21 C 0.47 9.75 8.32 36.01 0.30 10.05 16 22 O -0.49 -11.70 14.94 -26.86 -0.40 -12.10 16 23 O -0.53 -8.54 13.42 -39.25 -0.53 -9.06 16 24 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.90 5.92 -51.93 -0.31 0.60 16 27 H 0.08 1.61 7.49 -51.93 -0.39 1.22 16 28 H 0.09 1.62 7.79 -51.93 -0.40 1.21 16 29 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.16 3.13 7.68 -52.49 -0.40 2.73 16 33 H 0.10 1.81 7.55 -51.93 -0.39 1.42 16 34 H 0.19 4.14 4.96 -51.93 -0.26 3.88 16 35 H 0.40 4.50 9.10 45.56 0.41 4.92 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -30.40 304.05 -6.75 -37.15 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -2.98 Total: 10.04 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -2.10 Total: 12.48 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.05 Total: -42.59 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.18 Total: -35.72 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.40 -6.75 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050914036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.740 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds