Wall clock time and date at job start Tue Mar 31 2020 00:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99941 * 2 1 4 4 H 1.48493 * 109.47110 * 270.00134 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99906 * 3 2 1 6 6 H 1.48500 * 109.47235 * 149.99890 * 3 2 1 7 7 C 1.37871 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99921 * 184.82959 * 7 2 1 9 9 C 1.50702 * 119.99962 * 4.81880 * 7 2 1 10 10 N 1.46497 * 109.46673 * 54.31212 * 9 7 2 11 11 C 1.46499 * 119.99989 * 72.76080 * 10 9 7 12 12 C 1.50697 * 109.47535 * 94.72511 * 11 10 9 13 13 C 1.38671 * 120.41651 * 274.86110 * 12 11 10 14 14 C 1.38627 * 118.42102 * 179.78281 * 13 12 11 15 15 C 1.38224 * 119.16103 * 0.51161 * 14 13 12 16 16 N 1.31854 * 120.76429 * 359.72882 * 15 14 13 17 17 C 1.31880 * 121.72389 * 359.97438 * 16 15 14 18 18 C 1.34772 * 120.00210 * 252.75285 * 10 9 7 19 19 O 1.21284 * 120.00597 * 180.02562 * 18 10 9 20 20 C 1.50705 * 119.99725 * 0.02562 * 18 10 9 21 21 C 1.50707 * 109.47091 * 179.97438 * 20 18 10 22 22 O 1.20826 * 119.99839 * 0.02562 * 21 20 18 23 23 O 1.34227 * 119.99989 * 180.02562 * 21 20 18 24 24 H 0.97007 * 120.00110 * 355.00268 * 1 2 3 25 25 H 1.08999 * 109.47073 * 174.30609 * 9 7 2 26 26 H 1.08992 * 109.47402 * 294.30886 * 9 7 2 27 27 H 1.09006 * 109.47094 * 214.72418 * 11 10 9 28 28 H 1.08997 * 109.47591 * 334.71738 * 11 10 9 29 29 H 1.08007 * 120.79129 * 0.02562 * 13 12 11 30 30 H 1.08005 * 120.41945 * 180.22293 * 14 13 12 31 31 H 1.08001 * 119.61652 * 179.74551 * 15 14 13 32 32 H 1.08001 * 119.62014 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.47174 * 299.99499 * 20 18 10 34 34 H 1.09002 * 109.47186 * 59.99785 * 20 18 10 35 35 H 0.96700 * 116.99804 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 0.0782 9 6 1.2550 -2.4968 -0.1108 10 7 0.3972 -2.4676 -1.2980 11 6 0.9911 -2.5686 -2.6334 12 6 0.9673 -4.0056 -3.0865 13 6 1.9844 -4.8741 -2.7205 14 6 1.9187 -6.1884 -3.1566 15 6 0.8545 -6.5839 -3.9450 16 7 -0.0927 -5.7291 -4.2779 17 6 -0.0657 -4.4732 -3.8764 18 6 -0.9382 -2.3480 -1.1617 19 8 -1.6485 -2.3243 -2.1445 20 6 -1.5491 -2.2438 0.2120 21 6 -3.0459 -2.1196 0.0881 22 8 -3.5635 -2.1166 -1.0037 23 8 -3.8040 -2.0123 1.1906 24 1 -0.4851 0.8369 0.0732 25 1 1.9658 -3.3187 -0.1962 26 1 0.6405 -2.6387 0.7781 27 1 0.4196 -1.9577 -3.3323 28 1 2.0216 -2.2150 -2.6005 29 1 2.8064 -4.5357 -2.1069 30 1 2.6916 -6.8932 -2.8875 31 1 0.7981 -7.6050 -4.2923 32 1 -0.8597 -3.8021 -4.1689 33 1 -1.3047 -3.1369 0.7871 34 1 -1.1527 -1.3646 0.7202 35 1 -4.7592 -1.9354 1.0608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050914036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:46 Heat of formation + Delta-G solvation = -102.838771 kcal Electronic energy + Delta-G solvation = -22059.914997 eV Core-core repulsion = 18636.578226 eV Total energy + Delta-G solvation = -3423.336771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47557 -40.99772 -39.77230 -37.07086 -36.48368 -34.74174 -33.28795 -32.62429 -31.35571 -29.34530 -27.20875 -24.82468 -24.28589 -23.67105 -22.52682 -19.87043 -19.03782 -18.51420 -17.87439 -17.68766 -17.26522 -17.11285 -16.64248 -16.43183 -16.16157 -16.11656 -15.22449 -14.72848 -14.29455 -14.24639 -14.01463 -13.90478 -13.80562 -13.51806 -13.05533 -12.90537 -12.66329 -12.50875 -12.40619 -12.32691 -11.75465 -11.67286 -11.29145 -10.76451 -10.63203 -10.41280 -10.30052 -9.85278 -9.11296 -8.12072 -6.34068 0.19684 0.39788 1.40625 1.43824 1.50484 1.55765 2.02142 2.22143 2.41904 2.73632 3.02739 3.29631 3.58599 3.91739 3.99398 4.06411 4.16628 4.19197 4.43571 4.52543 4.68179 4.83059 4.89065 4.91966 4.94827 5.19429 5.24123 5.31330 5.45164 5.70778 5.76380 5.85558 6.01779 6.16726 6.74255 7.01161 7.07438 7.18187 7.41801 7.75432 8.82426 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.007804 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.998446 B = 3587.096917 C = 5166.784905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.040 3.960 3 Si 0.950 3.050 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.223 3.777 10 N -0.575 5.575 11 C 0.173 3.827 12 C -0.151 4.151 13 C -0.064 4.064 14 C -0.163 4.163 15 C 0.082 3.918 16 N -0.518 5.518 17 C 0.098 3.902 18 C 0.539 3.461 19 O -0.588 6.588 20 C -0.143 4.143 21 C 0.482 3.518 22 O -0.528 6.528 23 O -0.512 6.512 24 H 0.263 0.737 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.184 0.816 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.180 0.820 35 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -8.674 1.686 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.161 4.161 3 Si 0.778 3.222 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.104 3.896 10 N -0.305 5.305 11 C 0.049 3.951 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.183 4.183 15 C -0.075 4.075 16 N -0.227 5.227 17 C -0.058 4.058 18 C 0.327 3.673 19 O -0.469 6.469 20 C -0.183 4.183 21 C 0.325 3.675 22 O -0.416 6.416 23 O -0.326 6.326 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.171 0.829 30 H 0.191 0.809 31 H 0.201 0.799 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.196 0.804 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 2.978 -8.845 0.382 9.341 hybrid contribution 0.074 1.778 0.323 1.809 sum 3.052 -7.067 0.705 7.730 Atomic orbital electron populations 1.69445 1.06925 1.27388 1.49986 1.25530 0.95290 1.01870 0.93432 0.85681 0.79108 0.79986 0.77446 1.21684 1.21533 1.18835 1.21839 0.94294 0.91956 1.50035 0.91489 1.19475 0.90565 0.95593 0.83970 1.48205 1.05155 1.70146 1.07025 1.19835 0.99583 0.90799 0.84865 1.21352 0.96573 0.98424 0.99114 1.21820 0.97421 0.93345 0.96423 1.22500 1.00488 0.96654 0.98626 1.23369 0.89647 0.99918 0.94587 1.67671 1.28285 1.03570 1.23191 1.22538 0.96545 0.92194 0.94543 1.19832 0.82691 0.74719 0.90025 1.90659 1.61663 1.53234 1.41382 1.21852 0.87216 1.10226 0.98965 1.23328 0.91090 0.71682 0.81436 1.90775 1.75115 1.46257 1.29488 1.84491 1.25874 1.85199 1.37022 0.92703 0.93296 0.93659 0.93274 0.88626 0.82855 0.80853 0.79869 0.85349 0.85392 0.80364 0.71768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.92 8.26 21.44 0.18 -43.74 16 2 C 0.04 1.86 5.33 84.65 0.45 2.31 16 3 Si 0.95 38.89 29.54 68.60 2.03 40.92 16 4 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.54 -24.14 9.11 25.60 0.23 -23.91 16 8 H 0.07 2.90 7.82 -2.91 -0.02 2.87 16 9 C 0.22 8.97 5.65 85.63 0.48 9.45 16 10 N -0.58 -24.60 2.11 -830.52 -1.75 -26.35 16 11 C 0.17 6.87 5.43 85.63 0.46 7.33 16 12 C -0.15 -5.30 5.44 -19.77 -0.11 -5.41 16 13 C -0.06 -1.74 9.88 22.47 0.22 -1.51 16 14 C -0.16 -3.64 10.11 22.36 0.23 -3.42 16 15 C 0.08 2.12 11.18 84.69 0.95 3.06 16 16 N -0.52 -18.07 10.36 -195.84 -2.03 -20.10 16 17 C 0.10 3.76 10.67 84.67 0.90 4.66 16 18 C 0.54 25.45 6.33 87.66 0.56 26.01 16 19 O -0.59 -31.94 13.29 20.40 0.27 -31.66 16 20 C -0.14 -5.92 4.40 29.11 0.13 -5.79 16 21 C 0.48 19.74 8.32 71.24 0.59 20.33 16 22 O -0.53 -26.01 14.94 29.72 0.44 -25.57 16 23 O -0.51 -15.72 13.42 -51.38 -0.69 -16.41 16 24 H 0.26 12.92 8.32 -92.70 -0.77 12.15 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.81 5.92 -2.39 -0.01 1.79 16 27 H 0.05 2.18 7.49 -2.38 -0.02 2.17 16 28 H 0.10 3.53 7.79 -2.39 -0.02 3.51 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.18 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.13 5.56 7.68 -2.91 -0.02 5.54 16 33 H 0.13 4.45 7.55 -2.38 -0.02 4.43 16 34 H 0.18 7.87 4.96 -2.39 -0.01 7.86 16 35 H 0.42 8.75 9.10 -74.06 -0.67 8.08 16 Total: -1.00 -67.14 304.05 4.01 -63.13 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.46 Total: 26.66 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 5.10 Total: 33.12 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -3.60 Total: -90.19 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: 0.03 Total: -73.64 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -67.14 4.01 -63.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050914036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.706 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds