Wall clock time and date at job start Mon Mar 30 2020 23:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48497 * 109.46938 * 274.98481 * 3 2 1 5 5 H 1.48495 * 109.47208 * 34.98729 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98484 * 3 2 1 7 7 C 1.39896 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 197.74805 * 7 2 1 9 9 C 1.41160 * 119.99770 * 17.75253 * 7 2 1 10 10 C 1.40862 * 120.16399 * 25.03819 * 9 7 2 11 11 C 1.36377 * 119.82759 * 180.25092 * 10 9 7 12 12 C 1.39482 * 120.16470 * 359.48307 * 11 10 9 13 13 N 1.39243 * 119.83182 * 180.29299 * 12 11 10 14 14 C 1.34780 * 120.00114 * 324.02976 * 13 12 11 15 15 O 1.21579 * 119.99801 * 5.17683 * 14 13 12 16 16 N 1.34775 * 120.00107 * 185.18249 * 14 13 12 17 17 C 1.46493 * 120.00342 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47496 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47279 * 180.02562 * 18 17 16 20 20 O 1.20822 * 119.99847 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99711 * 179.97438 * 19 18 17 22 22 C 1.39478 * 120.33728 * 0.26800 * 12 11 10 23 23 C 1.36373 * 120.16762 * 359.97438 * 22 12 11 24 24 H 0.97000 * 119.99267 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.09076 * 0.02984 * 10 9 7 26 26 H 1.08003 * 119.91884 * 179.75370 * 11 10 9 27 27 H 0.97001 * 120.00250 * 144.02143 * 13 12 11 28 28 H 0.96998 * 119.99986 * 359.97438 * 16 14 13 29 29 H 1.08997 * 109.47693 * 300.00384 * 17 16 14 30 30 H 1.09008 * 109.46905 * 60.00186 * 17 16 14 31 31 H 1.08997 * 109.47271 * 300.00378 * 18 17 16 32 32 H 1.09003 * 109.47118 * 60.00553 * 18 17 16 33 33 H 0.96709 * 116.99375 * 180.02562 * 21 19 18 34 34 H 1.08000 * 119.91839 * 180.02562 * 22 12 11 35 35 H 1.08000 * 120.08956 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6199 0.8028 6 1 3.5891 1.4120 0.5920 7 6 2.0083 -1.2115 -0.0005 8 1 3.0497 -1.2340 0.2846 9 6 1.3528 -2.4047 -0.3738 10 6 0.2274 -2.3592 -1.2198 11 6 -0.4036 -3.5158 -1.5720 12 6 0.0691 -4.7423 -1.1054 13 7 -0.5769 -5.9193 -1.4742 14 6 -1.9176 -5.9377 -1.6117 15 8 -2.5536 -4.9069 -1.5062 16 7 -2.5531 -7.0987 -1.8659 17 6 -4.0103 -7.1187 -2.0148 18 6 -4.4746 -8.5490 -2.2968 19 6 -5.9736 -8.5695 -2.4506 20 8 -6.6057 -7.5452 -2.3458 21 8 -6.6064 -9.7257 -2.7049 22 6 1.1860 -4.7958 -0.2716 23 6 1.8245 -3.6473 0.0931 24 1 -0.4849 0.8401 0.0004 25 1 -0.1369 -1.4106 -1.5858 26 1 -1.2690 -3.4823 -2.2173 27 1 -0.0621 -6.7261 -1.6324 28 1 -2.0456 -7.9210 -1.9504 29 1 -4.4745 -6.7602 -1.0961 30 1 -4.2998 -6.4731 -2.8440 31 1 -4.0105 -8.9071 -3.2158 32 1 -4.1852 -9.1951 -1.4680 33 1 -7.5685 -9.6888 -2.7957 34 1 1.5465 -5.7491 0.0854 35 1 2.6895 -3.6902 0.7385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051602008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:37 Heat of formation + Delta-G solvation = -100.362478 kcal Electronic energy + Delta-G solvation = -20231.982186 eV Core-core repulsion = 16808.752795 eV Total energy + Delta-G solvation = -3423.229391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63480 -39.80059 -37.47599 -36.57140 -35.23838 -34.29786 -32.94427 -31.21137 -29.40860 -28.77961 -25.48327 -24.23571 -21.59111 -21.30041 -21.05587 -19.98509 -18.45984 -17.98259 -17.25742 -16.82123 -16.65997 -16.42869 -15.30480 -15.09064 -14.58200 -14.06236 -14.00515 -13.82247 -13.44817 -12.99696 -12.64000 -12.19123 -12.03920 -11.98238 -11.84371 -11.73522 -11.40544 -11.10104 -10.96731 -10.88815 -10.46327 -9.97120 -9.84181 -9.47903 -9.18062 -8.94046 -8.62819 -7.45877 -6.95282 -6.68209 -4.23601 1.84828 2.41935 2.74873 3.11047 3.11939 3.15165 3.18770 3.28460 3.74461 3.97833 4.28229 4.62684 4.68172 4.70043 4.89624 5.10067 5.63967 5.74952 5.81375 6.12960 6.19291 6.43677 6.53834 6.85324 6.89571 7.10895 7.16529 7.34705 7.39177 7.51660 7.68160 7.89889 8.06312 8.12231 8.32626 8.52543 8.69707 8.94405 8.97967 9.16152 10.24821 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.002959 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.717965 B = 9459.903535 C =10083.557338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.105 3.895 10 C -0.157 4.157 11 C -0.085 4.085 12 C 0.009 3.991 13 N -0.666 5.666 14 C 0.694 3.306 15 O -0.570 6.570 16 N -0.755 5.755 17 C 0.150 3.850 18 C -0.125 4.125 19 C 0.483 3.517 20 O -0.506 6.506 21 O -0.519 6.519 22 C -0.105 4.105 23 C -0.217 4.217 24 H 0.281 0.719 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.390 0.610 28 H 0.392 0.608 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.412 0.588 34 H 0.089 0.911 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 -17.182 -5.124 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.177 4.177 11 C -0.105 4.105 12 C -0.084 4.084 13 N -0.312 5.312 14 C 0.394 3.606 15 O -0.446 6.446 16 N -0.413 5.413 17 C 0.026 3.974 18 C -0.163 4.163 19 C 0.324 3.676 20 O -0.393 6.393 21 O -0.332 6.332 22 C -0.126 4.126 23 C -0.237 4.237 24 H 0.092 0.908 25 H 0.137 0.863 26 H 0.125 0.875 27 H 0.223 0.777 28 H 0.225 0.775 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.271 0.729 34 H 0.107 0.893 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.083 -15.773 -4.920 17.977 hybrid contribution 0.092 -0.126 -0.056 0.166 sum -6.991 -15.899 -4.977 18.067 Atomic orbital electron populations 1.69876 1.07532 1.29220 1.34694 1.25938 0.94717 1.01327 0.92427 0.86307 0.80533 0.80806 0.79097 1.19374 1.20338 1.18621 1.19541 0.98070 0.91314 1.40107 0.90420 1.17670 0.91240 0.92054 0.88786 1.20999 0.99038 0.96806 1.00867 1.20584 0.98816 0.91511 0.99614 1.16979 0.99267 0.84347 1.07765 1.42043 1.04301 1.12794 1.72074 1.15980 0.82268 0.83560 0.78755 1.90959 1.65662 1.31175 1.56799 1.44990 1.07121 1.09342 1.79880 1.20804 0.79597 0.93412 1.03636 1.21464 0.88408 1.00273 1.06180 1.23125 0.91446 0.80680 0.72303 1.90804 1.68410 1.34283 1.45818 1.84510 1.28367 1.36853 1.83420 1.20027 0.97161 0.97141 0.98251 1.20527 1.03937 0.92476 1.06750 0.90826 0.86341 0.87456 0.77694 0.77467 0.90577 0.90632 0.86899 0.86875 0.72853 0.89320 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.24 10.98 55.55 0.61 -20.63 16 2 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 3 Si 0.91 19.03 29.60 -169.99 -5.03 14.00 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.40 9.03 -37.85 -0.34 -12.74 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 10 C -0.16 -4.30 8.63 -39.26 -0.34 -4.64 16 11 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 12 C 0.01 0.20 6.30 -83.57 -0.53 -0.32 16 13 N -0.67 -11.73 5.31 -14.10 -0.07 -11.81 16 14 C 0.69 12.58 8.40 -86.92 -0.73 11.85 16 15 O -0.57 -13.39 13.78 5.30 0.07 -13.31 16 16 N -0.76 -9.07 5.56 -65.23 -0.36 -9.43 16 17 C 0.15 1.72 4.96 -4.05 -0.02 1.70 16 18 C -0.13 -0.84 5.93 -27.88 -0.17 -1.01 16 19 C 0.48 4.17 8.33 36.01 0.30 4.47 16 20 O -0.51 -6.49 16.74 -18.75 -0.31 -6.81 16 21 O -0.52 -3.12 13.42 -39.25 -0.53 -3.64 16 22 C -0.11 -2.33 9.90 -39.79 -0.39 -2.72 16 23 C -0.22 -5.32 9.74 -39.26 -0.38 -5.70 16 24 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 25 H 0.12 3.37 6.19 -52.49 -0.32 3.04 16 26 H 0.11 2.80 6.24 -52.48 -0.33 2.47 16 27 H 0.39 5.12 8.84 -40.82 -0.36 4.76 16 28 H 0.39 3.06 8.49 -40.82 -0.35 2.72 16 29 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.08 1.01 8.10 -51.92 -0.42 0.59 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 0.92 9.10 45.56 0.41 1.33 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -35.55 310.90 -7.59 -43.15 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -3.03 Total: 11.35 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.63 Total: -7.56 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.17 Total: -41.87 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.77 Total: -23.76 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.55 -7.59 -43.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051602008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.217 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds