Wall clock time and date at job start Mon Mar 30 2020 23:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48497 * 109.46938 * 274.98481 * 3 2 1 5 5 H 1.48495 * 109.47208 * 34.98729 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98484 * 3 2 1 7 7 C 1.39896 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 197.74805 * 7 2 1 9 9 C 1.41160 * 119.99770 * 17.75253 * 7 2 1 10 10 C 1.40862 * 120.16399 * 25.03819 * 9 7 2 11 11 C 1.36377 * 119.82759 * 180.25092 * 10 9 7 12 12 C 1.39482 * 120.16470 * 359.48307 * 11 10 9 13 13 N 1.39243 * 119.83182 * 180.29299 * 12 11 10 14 14 C 1.34780 * 120.00114 * 324.02976 * 13 12 11 15 15 O 1.21579 * 119.99801 * 5.17683 * 14 13 12 16 16 N 1.34775 * 120.00107 * 185.18249 * 14 13 12 17 17 C 1.46493 * 120.00342 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47496 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47279 * 180.02562 * 18 17 16 20 20 O 1.20822 * 119.99847 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99711 * 179.97438 * 19 18 17 22 22 C 1.39478 * 120.33728 * 0.26800 * 12 11 10 23 23 C 1.36373 * 120.16762 * 359.97438 * 22 12 11 24 24 H 0.97000 * 119.99267 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.09076 * 0.02984 * 10 9 7 26 26 H 1.08003 * 119.91884 * 179.75370 * 11 10 9 27 27 H 0.97001 * 120.00250 * 144.02143 * 13 12 11 28 28 H 0.96998 * 119.99986 * 359.97438 * 16 14 13 29 29 H 1.08997 * 109.47693 * 300.00384 * 17 16 14 30 30 H 1.09008 * 109.46905 * 60.00186 * 17 16 14 31 31 H 1.08997 * 109.47271 * 300.00378 * 18 17 16 32 32 H 1.09003 * 109.47118 * 60.00553 * 18 17 16 33 33 H 0.96709 * 116.99375 * 180.02562 * 21 19 18 34 34 H 1.08000 * 119.91839 * 180.02562 * 22 12 11 35 35 H 1.08000 * 120.08956 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6199 0.8028 6 1 3.5891 1.4120 0.5920 7 6 2.0083 -1.2115 -0.0005 8 1 3.0497 -1.2340 0.2846 9 6 1.3528 -2.4047 -0.3738 10 6 0.2274 -2.3592 -1.2198 11 6 -0.4036 -3.5158 -1.5720 12 6 0.0691 -4.7423 -1.1054 13 7 -0.5769 -5.9193 -1.4742 14 6 -1.9176 -5.9377 -1.6117 15 8 -2.5536 -4.9069 -1.5062 16 7 -2.5531 -7.0987 -1.8659 17 6 -4.0103 -7.1187 -2.0148 18 6 -4.4746 -8.5490 -2.2968 19 6 -5.9736 -8.5695 -2.4506 20 8 -6.6057 -7.5452 -2.3458 21 8 -6.6064 -9.7257 -2.7049 22 6 1.1860 -4.7958 -0.2716 23 6 1.8245 -3.6473 0.0931 24 1 -0.4849 0.8401 0.0004 25 1 -0.1369 -1.4106 -1.5858 26 1 -1.2690 -3.4823 -2.2173 27 1 -0.0621 -6.7261 -1.6324 28 1 -2.0456 -7.9210 -1.9504 29 1 -4.4745 -6.7602 -1.0961 30 1 -4.2998 -6.4731 -2.8440 31 1 -4.0105 -8.9071 -3.2158 32 1 -4.1852 -9.1951 -1.4680 33 1 -7.5685 -9.6888 -2.7957 34 1 1.5465 -5.7491 0.0854 35 1 2.6895 -3.6902 0.7385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051602008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:36 Heat of formation + Delta-G solvation = -127.916055 kcal Electronic energy + Delta-G solvation = -20233.176999 eV Core-core repulsion = 16808.752795 eV Total energy + Delta-G solvation = -3424.424204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51191 -41.13061 -39.23932 -37.25902 -36.50472 -35.96972 -34.72624 -32.26849 -31.34021 -30.54653 -27.01917 -25.52788 -23.23922 -22.86011 -22.11721 -21.55521 -19.46164 -19.18365 -19.08355 -18.13218 -17.48450 -17.40347 -17.02111 -16.43183 -15.90632 -15.68058 -15.42070 -15.13000 -14.64854 -14.46943 -14.13940 -13.90003 -13.66397 -13.33550 -12.96803 -12.81507 -12.71423 -12.60823 -12.50069 -12.29781 -11.78070 -11.70882 -11.68777 -11.26944 -11.00246 -10.48693 -10.14456 -9.41441 -8.82324 -8.58501 -6.23885 0.89200 1.18075 1.20166 1.38750 1.47262 1.53833 1.57200 2.19664 2.22877 2.33989 2.79676 3.47286 3.56139 3.77653 4.02677 4.34581 4.47822 4.52934 4.58277 4.78210 4.85450 5.02382 5.13177 5.21494 5.33252 5.39849 5.47343 5.63025 5.71632 5.82757 6.12739 6.15301 6.24023 6.39538 6.72302 6.95703 6.97938 7.05430 7.21753 7.70165 8.36162 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.002959 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.717965 B = 9459.903535 C =10083.557338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.072 3.928 10 C -0.183 4.183 11 C -0.101 4.101 12 C 0.025 3.975 13 N -0.653 5.653 14 C 0.689 3.311 15 O -0.629 6.629 16 N -0.723 5.723 17 C 0.150 3.850 18 C -0.111 4.111 19 C 0.489 3.511 20 O -0.559 6.559 21 O -0.508 6.508 22 C -0.097 4.097 23 C -0.223 4.223 24 H 0.286 0.714 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.418 0.582 28 H 0.419 0.581 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.429 0.571 34 H 0.138 0.862 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 -20.215 -5.077 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.069 3.931 10 C -0.203 4.203 11 C -0.122 4.122 12 C -0.069 4.069 13 N -0.302 5.302 14 C 0.390 3.610 15 O -0.509 6.509 16 N -0.382 5.382 17 C 0.025 3.975 18 C -0.148 4.148 19 C 0.332 3.668 20 O -0.451 6.451 21 O -0.322 6.322 22 C -0.117 4.117 23 C -0.243 4.243 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.255 0.745 28 H 0.257 0.743 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.291 0.709 34 H 0.155 0.845 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.946 -18.953 -4.897 20.459 hybrid contribution -0.380 0.573 -0.116 0.698 sum -6.326 -18.380 -5.013 20.074 Atomic orbital electron populations 1.69966 1.09330 1.30405 1.35997 1.26884 0.95405 1.04970 0.91329 0.85141 0.79246 0.75737 0.79242 1.18904 1.19605 1.17527 1.19827 0.98485 0.92351 1.41753 0.89927 1.18016 0.91750 0.93732 0.89580 1.20883 1.00421 0.96508 1.02522 1.20606 0.98603 0.92751 1.00224 1.17018 0.98881 0.84931 1.06118 1.41748 1.04411 1.12298 1.71734 1.16237 0.82206 0.84263 0.78334 1.90941 1.66868 1.33949 1.59163 1.44600 1.07433 1.08509 1.77627 1.20756 0.78700 0.96574 1.01491 1.21395 0.87217 0.97083 1.09091 1.23429 0.92126 0.80344 0.70860 1.90806 1.69621 1.36194 1.48447 1.84469 1.29964 1.35225 1.82541 1.20398 0.96025 0.98465 0.96833 1.20833 1.04496 0.92347 1.06670 0.90395 0.88906 0.88897 0.74467 0.74255 0.93223 0.93068 0.83530 0.83605 0.70890 0.84452 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.93 10.98 21.82 0.24 -46.69 16 2 C 0.03 1.49 5.13 85.24 0.44 1.93 16 3 Si 0.99 39.82 29.60 68.60 2.03 41.85 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.49 -27.39 9.03 23.39 0.21 -27.18 16 8 H 0.08 4.31 7.91 -2.91 -0.02 4.28 16 9 C 0.07 4.02 5.57 -21.27 -0.12 3.90 16 10 C -0.18 -10.56 8.63 22.48 0.19 -10.37 16 11 C -0.10 -5.38 8.61 22.14 0.19 -5.18 16 12 C 0.02 1.09 6.30 38.56 0.24 1.33 16 13 N -0.65 -21.44 5.31 -316.78 -1.68 -23.12 16 14 C 0.69 24.20 8.40 179.05 1.50 25.71 16 15 O -0.63 -30.31 13.78 -3.97 -0.05 -30.37 16 16 N -0.72 -15.53 5.56 -478.56 -2.66 -18.19 16 17 C 0.15 3.26 4.96 86.38 0.43 3.69 16 18 C -0.11 -1.11 5.93 29.85 0.18 -0.93 16 19 C 0.49 7.49 8.33 71.24 0.59 8.09 16 20 O -0.56 -14.40 16.74 21.98 0.37 -14.04 16 21 O -0.51 -4.66 13.42 -51.39 -0.69 -5.35 16 22 C -0.10 -4.05 9.90 22.13 0.22 -3.83 16 23 C -0.22 -10.80 9.74 22.48 0.22 -10.58 16 24 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 25 H 0.09 5.70 6.19 -2.91 -0.02 5.68 16 26 H 0.09 5.12 6.24 -2.91 -0.02 5.10 16 27 H 0.42 9.16 8.84 -92.71 -0.82 8.34 16 28 H 0.42 4.62 8.49 -92.71 -0.79 3.83 16 29 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 31 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.43 0.94 9.10 -74.05 -0.67 0.27 16 34 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -83.89 310.90 0.74 -83.16 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -1.11 Total: 26.16 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 4.30 Total: -13.42 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -4.10 Total: -88.00 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.38 Total: -49.75 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -83.89 0.74 -83.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051602008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.760 kcal (2) G-P(sol) polarization free energy of solvation -83.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds